RNA id: TU194766


Basic Information

Item Value
RNA id TU194766
length 988
RNA type TUCP
GC content 0.52
exon number 2
gene id tmem117
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64102056 ~ 64170220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCCACCAGTGGAAGCTCAATGTGTTTGTTACATTGCAACGCACTGATGGTTTGCGCCCGTCGTTCGGATAGAAGCATATATCCACAGCGCGCCTCTCCAGCGTCATCACCACAGACAGAGACCAGTGCTGACAAAGCAGCGCCTCGCTGCCATGCCCCGCCGCTGCATGGACAGCCAGCACAATGGCAGAGGATTTGGGGGGTGCCTCTGTTTTAGCAACAACAGGTCGCATGGATAATCCCGCCACAGCCGAGCCAGCCGTGTTTACCCCTCTCGTAGTTACGACGATTAGAGCGCCGCTGTCGGCTCGCAGGGCTTGAtgaggcaggagagagagccGAGCGGGGCTTCTCGTCCTTACAATACCGATTGAGAGGGAAACGCAAAGCAGCGTGGAACGGgTGGACTGTGGCTTGGGGTCCTTCAAGATGGATATAGATCCCTGCTTCCGCTATTATTTCCAGCACCCATGGTCCCGTCTGTTCGTGGCCTATCTCGTCACCTTCTGCAACTTCCTCATCTTCGCCGAGGACCCTGTCTCCCACAGCCAGACGGAGGCTCACATGATCGTGGTGGGAAACTGCTTCTCCTTCATAGTGAACAAGTACCCTGGCGGAGGATGGAGCGTCCTGAAAGTCATGTCGTGGCTGATGGCCATTGTCACTGGAATGTTTGCCGGGAAGTTCATATTCCACCGCAGGCTCTTTGGTAAGTCATGCGCGCCTTAATGAAGAATGCAGCCCTACAAACTAGGGCTGTCCCAGACTAATAACAAAATCTTGGTCGACTGAGAGttgtctgttctttcgaccaatagATTGGTTGAAATTTgaaaacgtgtatttttccatatatagacacgcCCTATGTTTGATTCTGCCATTAagctcctgaagttgccggtaataggccACACCAGCGGTCGgaaaccttttccatttggagtgccacGTTATCCTACTATTTCTACTGATCTGATTCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194690 lncRNA downstream 80412 64084388 ~ 64085551 (-) True G171136
TU194672 lncRNA downstream 154830 64004272 ~ 64011133 (-) True G171118
TU193837 lncRNA downstream 261885 63509607 ~ 63904078 (-) True G170356
TU194132 lncRNA downstream 306100 63859632 ~ 63859863 (-) True G170625
TU194070 lncRNA downstream 421677 63741903 ~ 63744286 (-) True G170573
TU194834 lncRNA upstream 33514 64201912 ~ 64202219 (-) True G171265
TU194848 lncRNA upstream 52976 64221374 ~ 64222667 (-) True G171279
TU194948 lncRNA upstream 210609 64379007 ~ 64381802 (-) True G171378
TU194927 lncRNA upstream 219760 64388158 ~ 64389035 (-) True G171357
TU194996 lncRNA upstream 302198 64470596 ~ 64471072 (-) True G171416
LOC110501774 mRNA downstream 194639 63968729 ~ 63971324 (-) True LOC110501774
XM_036952873.1 mRNA downstream 201994 63958607 ~ 63963969 (-) False LOC110501772
XM_036952866.1 mRNA downstream 201994 63958609 ~ 63963969 (-) False LOC110501772
XM_036952857.1 mRNA downstream 261845 63873240 ~ 63904118 (-) False nuak1b
XR_005037486.1 mRNA downstream 261845 63873240 ~ 63904118 (-) True nuak1b
XM_021568039.2 mRNA upstream 11883 64180281 ~ 64188853 (-) True LOC110493646
XM_021568081.2 mRNA upstream 221753 64390151 ~ 64400478 (-) True tesmin
XM_021568113.2 mRNA upstream 237662 64406060 ~ 64410316 (-) False LOC110493697
XM_021568122.2 mRNA upstream 237665 64406063 ~ 64410316 (-) True LOC110493697
XM_021568132.2 mRNA upstream 282904 64451302 ~ 64469580 (-) False ppp6r3
TU194598 other downstream 202142 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 1015112 63146774 ~ 63150851 (-) True LOC110493507
TU191507 other downstream 2650307 61515237 ~ 61515656 (-) True G168141
TU191442 other downstream 2674292 61490434 ~ 61491671 (-) True G168078
TU191382 other downstream 2865871 61291139 ~ 61300092 (-) True LOC110493186
TU195797 other upstream 917174 65085572 ~ 65086188 (-) True G172141
TU196875 other upstream 1215039 65383437 ~ 65383873 (-) True G173121
TU196928 other upstream 1366073 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 1366073 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 1366073 65534471 ~ 65536781 (-) False zcchc14

Expression Profile