RNA id: XM_036952911.1


Basic Information

Item Value
RNA id XM_036952911.1
length 5276
RNA type mRNA
GC content 0.58
exon number 35
gene id LOC110493669
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64250758 ~ 64379363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCCCCGTCACAGAGCCTCGTCCAGGCAGAAAAGGTTCCTCTCGTACCCCCGCTACGTGGAACTGATGCTGACTGCTGACGTCAAGATGGCGCGCCACCACGGACGCAACCTCGAGCACTACATCCTAACAATCATGTTGCTGCGGTCTACAGCGACCCAAGTGTAGGAAACCTCATCAACGTCATGATTGTCAAGCTGATCGTCATCCACAATGAACAGGATGGGCCCTCGATCAATTTCAATGCTGCTACTACCCTCCACAACTTCTGTGTCTGGCAACAGACCCAAAATGTCCAGGACGACAGTCACCCTTCCCACCACGACACTGCACTCCTCATAACAAGGGAAGACATCTGCCGAGCGAAAGACAAGTGTGACACATTGGGGCTGGCGGAGCTGGGGACCATGTGTGACCCGTACCGGAGCTGCTCCATCAGCGAAGAGAACGGACTCAGCGCTTCATTCACCATCGCTCACGAGCTGGGCCATGTGTTCAACATGCCCCACGATGACAACCCCAAATGCAGGGAGGCAGGCATGAAGCACCAGTATCATGTCATGGCGCCCACCCTCAACTACGACACCAGCCCCTGGTCCTGGTCCAAATGTAGTCGCAAGTACATCACCGAGTTTCTGGACACAGGGTATGGAGAGTGCCTATTGGACGAGCCAGTGAGCAGGACGTACGAGCTGCCCAACCACCTCCCTGGTCAGGTTTACAACGCCAACCGGCAGTGTGAGCTCATGTTTGGCCCCGGCTCCATGGTCTGCCCTTACATGaaACAATGCAAGAGGCTTTGGTGTACGAGTGCTGAGGGGGACCATAAAGGGTGTCGGACACAGCACATGCCCTTGGCTGATGGGACAGACTGTGGACATGGAATGCACTGCAGACATGGGAAGTGTGTGAACAAGGAGCTGGACCTGCGGCCGGTCCATGGGGAGTGGGGCCCCTGGGGACCCTACAGTGTCTGCTCCAGGACCTGTGGAGGAGGCACCAGGAGCACCTCCAGAGACTGCAACAACCCTGAGCCCAGGAACAGAGGAAGGTTCTGTGTGGGTCGAAGGATGAAGTTCCGGTCGTGCAACACTGAGCCGTGTCCCAGAGGACAAAGAGACTTCCGCGAGGAGCAGTGCTCTCAGTTCGACGGCAAGCACTTCAACATCAACGGTCTACCTCCCACCGTCCGCTGGATGCCCAAGTACAGCGGTATTCTAATGAAGGATCGGTGCAAGCTTTTCTGTCGGGTTACCGGGACGATGGCCTACTATCAGCTGAAGGACCGCGTCATCGACGGCACACCATGTGGCCCAGACACCTACGACATCTGCGTTCAAGGCCTCTGTCGGCAAGCAGGCTGTGACCATGTGTTGAACTCCAAGGCGAAGAACGACAagtgtggagtgtgtggaggGGACAACTCCTCCTGCAAAACCCTCGCTGGGACCTTCAACGACGCCGAGTATGgtTACAACACAGTAGTTCGGATCCCTGCAGGAGCCACCAACATTGATATCAAACAGGTCAGCTACTCTGGGAAGCCGGAGGATGACAACTACctcgCTTTATCTGACAGCCATTCTAACTTTCTCCTGAATGGAAACTTTGTGGTGGCCATGTTCAAAAGGGAAATCACCTTCAAGGGAACCGTCATTGAGTACAGCGGCTCAGACACCAAAGAGGAGCGCATCAACTGCACCGAACGTGTTGAGGAGGAACTCATCCTACAGGTTCTGTGTGTGGGGAACCTGTACAACCCAGACGTGCGCTACTCGTTCAACATCCCCATCGAGGAGCACAGGGAACAGTTTGTGTGGGACCCCTCGGGCTCCTGGCTGGAGTGCAGCCGCATGTGTCAGGgTGAGCGATGGCGCAAGGCAGCGTGTGTGAGGAAGAGTGACCACCTGGGGGTTTCTGACCAGCGCTGTGAGCCTCTACCCCGTCCCAACGCTGCCACTGAGCCATGTAACACTGACTGTGAACTCagGTGGCACATAGCAGGGAAGAGTGAGTGCTCTGCTAAGTGTGGCCCTGGCTACCGGACCCTGGACGTGCAGTGTATGAGGTACAGCTCGCTgaagaggcagagtgagagggtggaggggagggccTGTTCTGACCTACCCAAACCACAGGCCAGAGAGGCCTGCCACGGCGACTGTCTGCTCAAGAGCTGGCAGTACAGCACCTGGTCCCAGTGTTCGAAGACGTGTGGTCGCGGGGCTCGTACCAGGGACTCCTACTGTATGAATAACCTGGGGAGGAGACTGGTggacagggactgtagtgactcccTGAGACTGGTAACCGAGAGCTGCAACGACCAGGCCTGCCCTGGCTGGTCAGCCAGCGAGTGGAGCGAGTGCTTGGTGACGTGTGGGAAGGGGATGAGGCACAGGCAGGTGTCCTGTAGCAtgggggtaggagaggagaagcTGAGCGAACACTTCTGTGACCCGAATGCTAAGCCCCCGGCTGTCGGGAGCTGTGAACTGCCAGAGTGTGCCTCCTGGCAGGTCGGAGTCTGGGGACCGTGTGCGGTGACGTGTGGCCATGGTTACCAGATGcgggctgtgaggtgtgtgtcAGGGGCGTATGGTGACACGGTGGATGACAGGGAGTGTAACGCTGCATCCAGACCCAGGGACAGCCAGGACTGTGAGGTGGCACCGTGTCCCTGGGCCTCTCCTCAACACAGCACTGTCCGCCCTGACAGCTCTGGTCAGCTCTTCACACAGTGGAGATACGGCTCCTGGACCACGTGCTCTGTCTCCTGTGGGAAAGGGAAGCGTGCCCGTTACGTCAGCTGTCGGGACGCCCAGGGTGGAGTGGCAGACGAGTCCTACTGTGCCCAGCTGCTCCGGCCCCCAGAATCCTCAGCCTGCTTCAGCCCGTGTGGCCAGTGGCGCTCCTGGGAGTGGTCTCCTTGTTCAGTGACGTGTGGTGTGGGCCGGGCCACCAGGCAGGTGGTGTGCAGTAACTACCACCACCAGGTTGACGAGTCCTTCTGCGATCAGGACGAGAGGCCCAGCACAGAGCAGGAGTGTACAGGTGCCCCCTGCCCCTCCGTGTACCGCCAGAGGCCCAACGACCAGCCCTACAGCCCCCACGACCCCGCCAGCCACCCGGGACACAGCAGCTGGAACGTCCCCTCGGCAGACAACCAGTGGAGGACGGGGCCCTGGGGAGGATGCTCCAGTACGTGTGCGGGGGGCTTCCAGAGGAGGGTGGTGGTGTGTCAGGATGCGGAGGGTCGCAGCACCAGCCACTGTGACCAGAGGGTCAAACCTGCCGAGTCCAAGAACTGCGACTCAGGACCCTGCCCTCTGTGGAACTACGGTGTCTGGGGAGAGTGTACCCAGACGTGTGGTGGAGGCAGGAGGACGCGCCAGGTGGTATGCCAACGGCCCAACGGTCAAAGACTCAGCGACCACAACTGTGACATCCTGGACAAGCCTCCTGACGTGGAGCAGTGTAACCTGGACCTGTGCCCGGGCAGCGCATCCTGGCACCGCCGACCATGGAAGCCGTGTTCTGTGAGCTGTGGCCGTGGGACCAAGGAGCGGGAGATAGCCTGTGTTTACCCAAACCAAACCCAAATAGAGGAAGATCACTGCAGTCATCTGTCACGTCCCCGGACACAAAAGGCCTGCCGAGCCCGGGGATGCCCCAACTGGAAAGCCAACAGGTGGAGCGAGTGCTCTGTCCCCTGTGGAGTAGGGGTCCAGAACAGGGAAGTGTACTGCAGACTGAAGGGTACAGGACGGGTAAGAGAAGAGCTGTGTGGTTCCCACAACCATCCTGCCACTGCCCAGCCCTGCCAGGCTACTGAGTGTCTCCATTACACCTGGGCAGCCGGAGAGTGGCAAGATTGTAACGCCACCTGTGGAGAAGGTATGAGGAACAGGAAGGTTCTGTGTGTGGGGGCTGGGCTGACCCCTGTCCAGGACGCCCTCTGTGACCCCtcgtcttgccctgccctgcgcCAGCCCTGCAGTGGAGCAGCCTGCCACTACACGTGGATGACAGGGGAGTGGTCACAGTGCTCTACCAGCTGTGGAGTGGGCTACCAGCAGCGTATAGTGTCCTGCTCTGTGATGCCATCCTCCCTGACCCTGCACCCATATGATGCACAGTCCCGCCCCCACTGTCCAGAGCCCCACCCTCCTGGCACCAGACAGTGCCTCCTTAGGGACTGCCCACAAGCTGCCTACTGGAAAGTTGGCCCATGGAGCaagTGCTCCCAGACGTGTGGAGCGGGAGTGATGGAGCGCAGGTTGGAGTGTCTGGCCTCTAAAGGCCAACCGTCCAAACACTGCCGTCCAGCCGAGAGGCCCGAGTCACGGGCCGCCtgccgagagagagagtGTCAGCTGTTCGTGTCCTGCAGAGAGGTCCAGATGAGACAGGAAGTGAGGATGGATGGGGAGTTCTACCTGAAGGTCAAGTCCAGGATACTGCAGATCTTCTGTGCTGAGATGCAGACTGATTTCCCTAAGGAATATGTTACCCTGCGGAGTGGTCAGACAGACAACTACTCGGAGGTCTATGGATACAGGTTGCTGAACCCTTTTGAGTGCCCGTATAATGGCAGCAGAAGGCAGGACTGTGACTGCAGGAACGATTACTCTGCAGCGGGATACACTCTCTTCCACAAGGTCCGCCTGGACATCAGCTCCCTGAGGATAATGACCACAGACCTGCAGTTCTCTCAGACCCTGCTTGGCCGTCCCGTCCCGTTCGCCACGGCGGGAGACTGTTACAGCGCTGCCAAGTGTCCTCAGGGCCAGTTTAGCATCAACCTCATAGGGACTGGTCTGAAGGTGGCTGAGACAACCAAGTGGACCTCACAGGGCAACTATGTCTCTGTCAAAGTCCACAGATCAGAGgaCGGGGCAAGAATCTACGGTCGCTGTGGTGGCTTCTGTGGGAAGTGCATTCCCCAGCCTCACAACGGCCTGCTGGTTCAGGTCCAGTAAGGGTCGGAGCAACGTCAGACCAGGCAGTGAAACAGACACCAGACCAGAGCTTCCGGGGATCCAATGCACTTTGTGAATGTGGCCACTAACTCCTCCCTTCATCACCCCTTCCTCCCCACCCGGCAGCTAGAACATAGGGACAGCTCAAAGAATCTACACTGAGTATgccaaatattaggaacaccttcctaatattgacttgcactgcccccttttgccctcagaacagcctcaattcgtcagggcatagactctacaaggtgtcaaaagcgttccacagggatgctggcccgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194262 lncRNA upstream 136611 64066489 ~ 64144121 (+) True G170751
TU194286 lncRNA upstream 176621 64102087 ~ 64104111 (+) True G170774
TU194206 lncRNA upstream 283957 63996122 ~ 63996775 (+) True G170697
TU193430 lncRNA upstream 492813 63766983 ~ 63787919 (+) True LOC110493594
TU193429 lncRNA upstream 494401 63766983 ~ 63786331 (+) False LOC110493594
TU194380 lncRNA downstream 632 64379995 ~ 64381175 (+) True G170865
TU194485 lncRNA downstream 11777 64391140 ~ 64395041 (+) True G170953
TU194493 lncRNA downstream 23113 64402476 ~ 64403416 (+) True G170961
TU194519 lncRNA downstream 72065 64451428 ~ 64455336 (+) False G170981
TU194520 lncRNA downstream 72065 64451428 ~ 64452703 (+) True G170981
XM_021568059.2 mRNA upstream 100529 64169264 ~ 64180203 (+) True LOC110493658
XM_021567998.2 mRNA upstream 188544 63989427 ~ 64092188 (+) False nell2a
XM_036952885.1 mRNA upstream 188544 63989427 ~ 64092188 (+) True nell2a
XM_021618342.2 mRNA upstream 327990 63950941 ~ 63952742 (+) True LOC110533812
XM_021567981.2 mRNA upstream 338163 63915925 ~ 63942569 (+) True mov10l1
LOC110493690 mRNA downstream 24756 64404119 ~ 64406404 (+) True LOC110493690
XM_036934108.1 mRNA downstream 48528 64427891 ~ 64428722 (+) True LOC118936791
XM_036952930.1 mRNA downstream 49471 64428834 ~ 64445900 (+) True LOC110501781
XM_021568256.2 mRNA downstream 191492 64570855 ~ 64579089 (+) False anpepb
XM_021568270.2 mRNA downstream 191492 64570855 ~ 64598616 (+) True anpepb
TU193612 other upstream 402499 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 450412 63820461 ~ 63830320 (+) True G170131
TU192528 other upstream 1495089 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 2400308 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 2553278 61726959 ~ 61727454 (+) True G167609
TU196081 other downstream 1151783 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 1214154 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 1214154 65593517 ~ 65640976 (+) True jph3
TU196344 other downstream 1556233 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 1883263 66262626 ~ 66266023 (+) True LOC110494096

Expression Profile