RNA id: XM_021568113.2



Basic Information


Item Value
RNA id XM_021568113.2
length 766
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC110493697
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64406060 ~ 64410316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAATCATCCTAACCCAAACGAGAATCACTACATGGACATTGAAGTTCTCTCCTCATCTATGAGCATACCTATTTTGAATAAAGCCTTATAGACGTTTACATTATATTTTCTCTTCCACCCTTGAACAAAACTTTAAAGATGCAGAAGTCTATTGGAGTAGTTTGCATATCACTCATTTTCTGCGCAGCTCTGTCAGAAACAATTGGATTAGTGATTGCGGCTAAAGAGAAGCGAGGATGGACACTGAACAGTGCTGGCTACCTTTTGGGTCCTCGTCGTATTGATCACCTAATACAGATAAAGGATAATCCCAGCGTAAGGGGGAGAGAAGAACTGCTAAGTCAATATGGCATCGACGGTCACCGGACGCTCAGTGACAAGCATGGCCTTGCTGGTAAGAGAGACATGCCCCGGGACTATGACTTCAAATCAGGTTCCTTGAGAATAACAGATGAGGATGTATTACACAATGTCATTGACTTCTTATCATACATGCAACTTAAAGAAATCGGAGCTCTGGATACCCTGCCTTCCTTGCTCACATCAGAAGAGATGAGTCAGCCCTAGTTCAACTTCAACATTCATTGATCTATTCTCAACTCTTCAAAAGCCTGCAAAGTACATTGTCTGTGCATATCCCATTATACTGGATACTGGTGTCATGATTTACAACAATCTCCTATACAGAGTAAACATGTTCCTATTATAATTTGAAAGAAATGTATTGAATAAAACTTTTTGAATGGCAATACTTTTTTGTTCCTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194927 lncRNA downstream 17025 64388158 ~ 64389035 (-) True G171357
TU194948 lncRNA downstream 24258 64379007 ~ 64381802 (-) True G171378
TU194848 lncRNA downstream 183393 64221374 ~ 64222667 (-) True G171279
TU194834 lncRNA downstream 203841 64201912 ~ 64202219 (-) True G171265
TU194690 lncRNA downstream 320509 64084388 ~ 64085551 (-) True G171136
TU194996 lncRNA upstream 60280 64470596 ~ 64471072 (-) True G171416
TU195000 lncRNA upstream 65001 64475317 ~ 64475934 (-) True lrp5
TU195001 lncRNA upstream 118159 64528475 ~ 64528793 (-) True G171420
TU195039 lncRNA upstream 144857 64555173 ~ 64555423 (-) True G171458
TU195040 lncRNA upstream 147307 64557623 ~ 64557888 (-) True G171459
XM_021568081.2 mRNA downstream 5582 64390151 ~ 64400478 (-) True tesmin
XM_021568039.2 mRNA downstream 217207 64180281 ~ 64188853 (-) True LOC110493646
XM_036952899.1 mRNA downstream 235840 64102056 ~ 64170220 (-) False tmem117
XM_021568019.2 mRNA downstream 237600 64102057 ~ 64168460 (-) False tmem117
XM_021568010.2 mRNA downstream 238316 64102056 ~ 64167744 (-) False tmem117
XM_021568132.2 mRNA upstream 40986 64451302 ~ 64469580 (-) False ppp6r3
XM_021568140.2 mRNA upstream 40986 64451302 ~ 64469580 (-) False ppp6r3
XM_021568149.2 mRNA upstream 40986 64451302 ~ 64469580 (-) False ppp6r3
XM_021568158.2 mRNA upstream 40986 64451302 ~ 64469580 (-) False ppp6r3
XM_021568177.2 mRNA upstream 40986 64451302 ~ 64469832 (-) False ppp6r3
TU194766 other downstream 237662 64165963 ~ 64168398 (-) True tmem117
TU194598 other downstream 442239 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 1255209 63146774 ~ 63150851 (-) True LOC110493507
TU191507 other downstream 2890404 61515237 ~ 61515656 (-) True G168141
TU191442 other downstream 2914389 61490434 ~ 61491671 (-) True G168078
TU195797 other upstream 675256 65085572 ~ 65086188 (-) True G172141
TU196875 other upstream 973121 65383437 ~ 65383873 (-) True G173121
TU196928 other upstream 1124155 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 1124155 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 1124155 65534471 ~ 65536781 (-) False zcchc14

Expression Profile