RNA id: XM_021568256.2


Basic Information

Item Value
RNA id XM_021568256.2
length 3431
RNA type mRNA
GC content 0.47
exon number 20
gene id anpepb
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64570855 ~ 64598616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCACAGACACCACATCATCTCTCTTGCTGTGTAGTTTTACGCCAGTTGGACATGGGGGGAGGCTTCTATATCAGTAAGTTTGTTGGGGTGGTGGGCATTGTGTTTGGTGCAGGGGCAGTGGCCACCGTCATTGCGTTGGCAGTCGTTTATTCTCAAGAGGTAGCCAAAAATGAGGCTGTCAATCCGACTAATGGAGGTTCCACTATCAAGCCACCGGTCACCACACCTGGAGGGTCAACTGTCAAGCCACAGATCACCACACCTGTCATACCCACAACTGCACCCTCAAATGAACCATGGGACAAGTACCGTCTCCCAGACACCCTGAAGCCTGACCACTACAACCTAACCCTGTGGCCTCGACTCACCGTCAACGCACAAGGCCTCTACATCTTCACAGGGAAATCCTATGTGGTCTTTCAATGTGTGAAGGAGACAGACCTGATCCTCATACACTCCAACAAGCTGAACTACACCAAGTGGGAGGATGACCATCTGGCTAAACTGTCTGCTCTCGGTAGCACACCCGCACCAACCATAAAAAAATCCTGGCTACAGCCAACAACTCAGTTCCTGGTATTGGAACTGAATGGCAAGTTAGCTGTTGGAGAATCCTACCAGCTGGACACAGTGTTTGTTGGGGAGCTGGCTGATGACTTGGGAGGCTTTTATAGGAGTGTATATACGGAGGAAGGAGAAGAAAAAGTTGTTGCGACAACTCAAATGCAGCCCACAGATGCCAGGAAAGCCTTCCCCTGTTTTGATGAGCCTGCAATGAAAGCCATCTTCCACATCACACTCCTCCATCCCCCGACGACAGTGGCCCTGTCCAACGGCATGGAGCATGCTCCTGTTGAAGTCACTGAGGAGGGGCCCGAGGGGACTGTGAGAGTTTGGAGGACATCTTTCGAcgaaacaaaaaaaatgtcaacATACTTGTTGGCGTTTATTGTCAGTGACTACGACTATATTAACAGCACAAATGACAATGTTCTGATCCGGATCTATGCCCGCAAAAAAGCTATCGCTGATGGACAAGGCGAGTACGCCCTCAACAAAACAGGACCCATCCTGAAATTCTTCGAAAAATATTACAATGCCACCTACCCTCTGCCAAAGTCAGACCAGATTGCTTTGCCTGACTTCAATGCTGGAGCAATGGAGAACTGGGGACTCATTACATACAGAGAAACAGCCCTCTTGTACGACCCGAAGATGTCCTCCAATTCAAACAAAGAAAGGATCGCCACCATTATTGCTCATGAACTGGCCCACATGTGGTTTGGAAACCTTGTGACACTGAGGTGGTGGAATGACCTGTGGCTAAATGAGGGCTTTGCGTCTTACGTAGAATATCTTGGGGCAAATGAAGCAGAGCCTGACTGGAACATTAAAGACCTGATAGTTCTGGGTGATGTGCACAGGGTGTTTGCAGTAGATGCTCTTGCCTCATCTCACCCCCTGTCCTCCAGAGAGGAGGACATCCAGAAGCCTGAGCAAATCAGTGAACTGTTTGATGCCATCTCTTACAGCAAGGGAGCATCAGTGTTGAGAATGCTCTCTGATTTCCTGTCTGAAGAGGTCTTCTCCACAGGACTCGGTACATACCTGAACACGTTTGCCTATGATAACACAGTGTATACTGACCTCTGGGATCACCTCCAAATGGCAGTAAATTCCACTGGCACGTCACTTCCCACAGGCCAAACTGTGCACAGCATCATGAACCGCTGGGTCCTTCAGATGGGCTTCCCAGTGGTCACCATAAACACAACCACTGGACTGATCAACCAGCAACACTTCCTTCTGGACCCTTCCACTGCAGGGAGTGTACCACCATCTGACTTCAATTATGAGTGGATAGTACCAATCAGGTGGATGAACACAGGATTTGTACAGCAACAGACATGGCTAGAGGACAAAACGGCTAATAAGCCTGAAATGGCAGTCACTGGGAACAACTGGATACTGGCCAACCTTAACGTCTCTGGATACTATAGGGTTAACTATGATAACACCAACTGGGAACGTCTCCTCGGTGTACTGAGCAGCAATCATGAGTCTATTCCAGTTATCAACAGAGCTCAATTGGTGGATGATGCTTTTAACCTTGCAAGGGCAAAATATATCAACACAACATTAGCGTTGCGAACAACGAAGTATCTCAGAAGTGAAAGGGAATATATGCCGTGGGAGTCAGCTCTGGACAACTTGGACTTTTTCTACCTCATGTTTGATCGGAGTGAAATCTATGGGGATATGCAGACTTACCTAAAATATCAAATAGAACCACTTTTTAAGCACTTTGGGAATATCACTGAAAACTGGACAGAAGTACCCACTGGACATATGGACCAGTACAACCAGGTGAATGCCATCAGGGTGGCCTGCAGCACTGGTATGGAAGAGTGCCAGACTCTGACTAAAGGCTGGTACAGTCAGTGGATGAAAGACCCTACAAACAATCCGATACACCCCAACTTGAGGACGACAGTGTACTGCAGTGCTATTGCTGCAGGGGGGGCTGCGGAGTGGGAATTTGGTTGGGATCAGTTCAAGGCTGCCACCATCGCTATTGAGGCAGACAAGCTTCGATCTGCCCTGGCCTGTACCAAGCAGCCCTGGCTACTCAACAAGTACCTGGAATACACCCTGGACGCAAACAAAATTCGCAAGCAGGATGCTACCTCTACCATTGTTTACATTGCAAGCAACGTGGTGGGCCAGTCTCTGGCCTGGGACTTTATGAGAGACCGATGGAATTACATCTTTACTCAGTACGGTGGTGgatctttctccttctccaatCTCATCAATGGTGTGACCAAGAGGTTCTCAACAGAATTTGAGCTCAAACAGCTCAAGCAATTCCAGGCGGACAACTCTGAGGTTGGCTTTGGCTCAGGTACCTTGGCAGTTTCACAGTCCATTGAGAGGACAACAGCTAACATCAAATGGGTGGCGGAGAACAAGGACTCAGTGCAGACATGGTTTAGAACAGAGGTTCCTAAAGAATAAGGGTCAcatggagaaacacacacctaTCCAAAAGCTATGTTCCCGGTTTTTACGAGAGTTGTGTCTCTTTAACGGTTAAAGGACCATTTTGATTCTACAGCTATCCTGCCGTTTAATCAGAAATACTATGTATGAATTGAAATGTGCTTTTTCTAACAAAGACTAAAGACATTTTGATACATGCTTGCATCCTGAATAACTTTTTGGGGAAGTTTATTTTTTATCATAGTATGTTTTGCTTAAGTCAGTATTTGTAGATATTTGAAGACAGTAACTATCTACAATGCTGATTTGTTATAAAACACTGGTTTATTGTTGTGGAAATAATACACGTGTTTTACACTGCATCTTTTATGTAATTTTGCTTCTTTTGGGCTTTTACATTACTGGAAATAAACGGTTCTCCTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195054 lncRNA upstream 3610 64566628 ~ 64567245 (+) True G171472
TU194575 lncRNA upstream 18167 64529100 ~ 64552688 (+) True G171032
TU194533 lncRNA upstream 94857 64475302 ~ 64475998 (+) True G170992
TU194519 lncRNA upstream 115519 64451428 ~ 64455336 (+) False G170981
TU194520 lncRNA upstream 118152 64451428 ~ 64452703 (+) True G170981
TU195065 lncRNA downstream 21273 64600362 ~ 64600578 (+) True G171483
TU195077 lncRNA downstream 42638 64621727 ~ 64621942 (+) True G171495
TU195164 lncRNA downstream 115626 64694715 ~ 64695004 (+) True G171543
TU195231 lncRNA downstream 248881 64827970 ~ 64828215 (+) True G171596
TU195243 lncRNA downstream 262934 64842023 ~ 64842304 (+) True G171608
XM_036952930.1 mRNA upstream 124955 64428834 ~ 64445900 (+) True LOC110501781
XM_036934108.1 mRNA upstream 142133 64427891 ~ 64428722 (+) True LOC118936791
LOC110493690 mRNA upstream 164451 64404119 ~ 64406404 (+) True LOC110493690
XM_036952909.1 mRNA upstream 191492 64250758 ~ 64379363 (+) False LOC110493669
XM_036952911.1 mRNA upstream 191492 64280732 ~ 64379363 (+) True LOC110493669
XM_036953038.1 mRNA downstream 87046 64666135 ~ 64759393 (+) False akap13
XM_036953051.1 mRNA downstream 87047 64666136 ~ 64759393 (+) False akap13
XM_036953029.1 mRNA downstream 87048 64666137 ~ 64759393 (+) False akap13
XM_036953032.1 mRNA downstream 87048 64666137 ~ 64759393 (+) False akap13
XM_036953046.1 mRNA downstream 87048 64666137 ~ 64759393 (+) False akap13
TU193612 other upstream 692622 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 740535 63820461 ~ 63830320 (+) True G170131
TU192528 other upstream 1785212 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 2690431 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 2843401 61726959 ~ 61727454 (+) True G167609
TU196081 other downstream 952057 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 1014428 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 1014428 65593517 ~ 65640976 (+) True jph3
TU196344 other downstream 1356507 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 1683537 66262626 ~ 66266023 (+) True LOC110494096

Expression Profile