RNA id: XM_036953106.1


Basic Information

Item Value
RNA id XM_036953106.1
length 4199
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110493825
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64866284 ~ 65024865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACACTTAGAGGACAGACAGTAGTGAGAGGAAGGAGAGCTGACCGAGCCCCCCTTGTACACGCATCCTTTATTCCCCTTCTGGGTTAGACACAGCACAAACCATGCACCACTACAGCAAATGCAGTAACTTTACCTGGAACGGAACCCTGAAAGAGCTGGGTAACTACTCCTCCAGTGAGCGAGTACGGGCCAGCATGGCAGCCCCCGGCAGCTCCAGCGGACTAGAGGTTCTCCTGTCTACTCTGCAGAATGCAGGGGACATTGAGAGCACCCTCAATATCCTCAATGTGCTGGATGAGCTGCTTTCAGCTGgcacAGACAGACGGATCACCTACATGATCTCAAAGGGGGGCAGCGAGGCCCTCCTAAGCGCCCTGGTGACCACAGCCAGGACCTTCTCCCCCAACTTCACCATCCTCCTCCCCCTGCTGCACCTCCTGGCCAAGGTCGGACACAGAGACCGTCGTATTGGGATGAAGGCAGAGAAGGCGGAGGCTGTGCTGCCAACTCTGACTCTGCTGAAACAGAATGTAAAACACACCAGGAGGACGGCAGCCTGCCTTTGGGTCCTCCAGGTTTTCTGCTCCTCTGTCACCACAGCTACGCTGCTGGGACAAAACCGAGGCCTGGACGTTATATTCAGACTGATACCCCCTCACACTACGAGGCACAAACGCACCGTCAAGGCAGCAATCGATGCACTGGCAGCACTTTTATGTTCAAAGGCCAATGTCAGGGCCGCTGTGGCTAACGGTTACGTGTCTGCCCTGTTGAAGCTGTATGAGGACTGGCATAACAAGGACCCGGACCATGAGACCATCCCCATCCGCCTGGCCCTGCTCCATTGCCTGCACCAGACCACCCACTGCAGCGCTGGCCGGGACGCTCTGGTGGCGCAGGGGGGCATCAGCCTCCTCTACCACACCATACAGACCTGCCTGGCCAGTAACGGTCTGGAATCTCTGGTGGAGCCTGCTGTCCAGCTGATGAGGAAGTGCTATCCTAAATGTCCCCTGCCTCTGACCTCGGATCAGAGTGTTTATACCTTCCCCCTGCCTGGGAGGCCTACTGACACTGCTCCAGGACCCCAAGATGTCAGCTTCGAAGATGATAGTGACGACGACATTGAAAATGAAGAGGCTGACTGCGGCAAGGAATATGAtgatgacctggagtcagacgTGAACAAGCTGCGATCCCGGCCAGAACCTGACAGGCCCCTGGAGCAGCTGGGTCAGTACGTCAGACTGTGTCCTGAACTCCACCACGACTTCCAGGACTTGGACTCGGACTCTGAGGTAGATTCAAGCTCCGAGGAGGAGGGTCTACTCAATGAGGACTTCAGGACTGATGGAAGATCCAGAGTAAATCTCAGAGATTCTCCGTCCCATTCTCCCCTGGAGCACCCAGTCTCAACAGTAGAGGGAGACCAGGATGGCAAAGGAGAACCTCCAGAGAACCATCTGCAGGCCTGTGACTTTCACAGCCACTTCCTGTCTAGCGCCAGTGTGAAGCAGGACAGCCACCCTAGCATGGTAGACAGGCTTCTGGAGAAACACGGGGCCTGCATCCCCCACCATGACCCACGCATGTACACCGCAGCAGCAGCCCTCACCAAGTCCATCCCTGAGTATTCCATCTTAGCCTTCCCTGACTTCTGGGGACATCTCCCCCCGCAGAGTAAAGAGCCAATGGCTGGAAGGAAACCCAATGTGCAAAGGAAGAAGGTGTTTGAGGACGTCCAGCGTCTCCTCAACCCGGAGGACGTTATTGATGAAGTTGTGTTTGACCTGGAGGACCCCAGCTCCCAGGGCTCTCCTGATCACTCCGACTCCCTGAGCTTCTTCTCCAAGTTTGAGTGCGGGAACCTGCGCAAAGCCGTTCACGTCCGTAGtCACGAGTACGATCTGATCCTGAACGCGGACGCCAACTGCTCCCAGCACCACCAGTGGTTCTATTTCGAGGTCAGCGGTATGGCGGCAAACGTGCCCTATCGCTTCAACATCATCAACTGTGAGAAAGCCAACAGCCAGTTCAACTACGGGATGCAGCCTGTACTGTACTCTGTCAGAGAGGCTCTGGAGGGACGACCCAACTGGCTCAGAACTGGAACTGAGGTCTGCTACTACAGCTTCTGTCCGAGCCGAGGCCAAAAGAGCTCTTCCTTCTACACCCTGACCTTTACCGTGACCTTCAAACACAACGAAGACGTGTGCTACCTGGCCTATCACTACCCCTACACCTACTCTGCCCTCCAGAGTCACCTGCAGGTGCTGCAGCGGTCAGTGGACCCTCGCAAGTTGTTTTTCCGCCAGCAGAGTCTGTGCAACACACTGGCTGGTAACCCCTGTCCCCTGGTCACTATCACTGCCTGCCCCCCCTCCAAAAGCTGGAAGGACTTGCATCAGCTGCGTAACCGTCCGTGTGTAGTACTGACAGCACGGGTCCACCCTGGGGAGAGTAACGCCAGCTGGGTGATGAAGGGAACCCTGGAGTTTCTGTGTAGCAGTGACCCGGTGGCTGAGGCACTGAGGGAGGCCTACATCTTTAAGATTATCCCCATGCTCAACCCCGACGGGGTCATCAACGGCACTCACCGCTGCTCTCTGAACGGTGAAGATCTCAACAGACAGTGGATGAAGCCTGATCCTGTTCTGAGCCCTACTATATACCATGCCAAGGGCTTCCTCTACTACCTCAACAGCATCGGCAAGACACCCCTGGTGTTCTGTGATTACCATGGTCACTCGCGGAAGAAGAATGTGTTCCTGTACGGCTGTAGTGTCAAGGAGACTGTGTGGCAGTCAGGTTCTGCTGTCAATACTGCCACTCTGAAGGAGGACCCAGGATACAGGACCATCCCTAAGACTCTGGACCGGATAGCCCCAGCCTTCTCCTTTAACAGCTGCAACTACCTTGTGGAGAAGTCCCGAGAGGCCACAGCCCGGGTGGTGGTCTGGAGGGAGATGGGTGTGCTCCGGAGCTACACCATGGAGAGCACCTACAATGGCTGCGACCAGGGCGTCTTTAAGGGCATGCAGACTGGCACGGGGGAATTGGAGGAAATGGGGGTGAAGTTCTGTCAGTCGCTGCTCTCCCTGAGGAGGAACACCATGCTGTACAACAGAAGAGTCATCAGCCAGCCAACCCTGCTCAACCTGGATGACAACCTCCTAGACCACAAGTCCCGCAACTGCTTCGAGGATGATGAGCCACCTTGTGTAGAGGAAATTGAGTACCGGAATGACAGCTTCCCCGAGCCCAACAGAAATGATCTGGACTCTGAGGTCAATGGCAACACATCCAGcgctgaggaggaggaagatgatgagGAAGAGCACCAGACAACCGGGAACAGTCGACGACGCTCAATGAAGTCCCGCCTCTATCCTCACTTGATAGGCCAAGAGACTCTGAACATCAAGAGGAGCCCATGCAATGGGATGAACATTTCAAATGGACAATATCTGAGCTAAGGTCTCACAAGGACATTCCCCCAAAGCACTTATTTCCTTTttttaataatacattttattatgGAAATTCTAATGTATATGGTTGCTAAGTTAGTGGCTATTTCCCTTAGGCTTTCAGAACAGTGGATATATAAACTATAGCAGTAGAATAGTGGACAATGGCTTTGTATGATTTGTATATGACTTTGTCTGAGATGCATGTGAAGGACAGTCCGGCATGACATGGGCTTGTTGAGGCCATATTCTCCACAGAGAGCCTACTGTAAATGGGTATATGGGTGAAGTAGGGTACtagacagtattatattatatgagattatatttatattatttgtGTATAGTAAATGTATCAAATACATCAGAAATAGGGTGGGGCTGTCACAATGTTTACCTATTATTTACATGCAGTATGATCTAAGTTCCAAAATAACAGGCCACCATAAGCATTGTTATATTTTTAACATTCATAACCTGCAATGCATTTACATAGTGCTAACCAGCAAACTGTAGTTACTTTGggggaaaatatatttatattttttgaaatTATATAAATATGAAGTATTTGTATAACTAAACACATTTTGCTAGTTGACCGTTTTCATAATGTCTAAAGACGATAGTATTGAGTGGTAACTGTTCGTTATACATGTTCCATTCTCCTTCCTCTTAAATATGTTGGAGCCGAAGAGCACTACAATAAAATCAACTTTTATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195243 lncRNA upstream 23980 64842023 ~ 64842304 (+) True G171608
TU195231 lncRNA upstream 38069 64827970 ~ 64828215 (+) True G171596
TU195164 lncRNA upstream 171280 64694715 ~ 64695004 (+) True G171543
TU195077 lncRNA upstream 244342 64621727 ~ 64621942 (+) True G171495
TU195065 lncRNA upstream 265706 64600362 ~ 64600578 (+) True G171483
TU195803 lncRNA downstream 79719 65104584 ~ 65105782 (+) True G172147
TU196010 lncRNA downstream 412127 65436992 ~ 65438383 (+) True G172350
TU196041 lncRNA downstream 450445 65475310 ~ 65475518 (+) True G172379
TU196047 lncRNA downstream 456858 65481723 ~ 65482142 (+) True G172385
TU196048 lncRNA downstream 457327 65482192 ~ 65482461 (+) True G172386
XM_036953038.1 mRNA upstream 106891 64666135 ~ 64759393 (+) False akap13
XM_036953051.1 mRNA upstream 106891 64666136 ~ 64759393 (+) False akap13
XM_036953029.1 mRNA upstream 106891 64666137 ~ 64759393 (+) False akap13
XM_036953032.1 mRNA upstream 106891 64666137 ~ 64759393 (+) False akap13
XM_036953046.1 mRNA upstream 106891 64666137 ~ 64759393 (+) False akap13
XM_036953227.1 mRNA downstream 506261 65531126 ~ 65536782 (+) False map1lc3b
XM_021568438.2 mRNA downstream 568603 65593468 ~ 65648660 (+) False jph3
XM_021568445.2 mRNA downstream 568603 65593468 ~ 65648660 (+) False jph3
XM_021568559.2 mRNA downstream 767724 65792589 ~ 65801972 (+) True lcat
XM_021568592.2 mRNA downstream 787365 65812230 ~ 65821040 (+) True pla2g15
TU193612 other upstream 988051 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 1035964 63820461 ~ 63830320 (+) True G170131
TU192528 other upstream 2080641 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 2985860 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 3138830 61726959 ~ 61727454 (+) True G167609
TU196081 other downstream 506281 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 568652 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 568652 65593517 ~ 65640976 (+) True jph3
TU196344 other downstream 910731 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 1237761 66262626 ~ 66266023 (+) True LOC110494096

Expression Profile