RNA id: XM_021568341.2


Basic Information

Item Value
RNA id XM_021568341.2
length 4929
RNA type mRNA
GC content 0.46
exon number 17
gene id ntrk3a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65111274 ~ 65365999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCATCTGTCTTGGAGCGGTGCTAAAACAACCTGGAACTAACAGCTAACGGCAGCCTGAATACAGTCAGGGCAACCTATACCATGCAACCTAGAGAGGAGGACAAGCCCGGAGTAGTGATTCTTGAACCATTTCTAATTTGACGGAGTATTTTTTTACTATTATTCGTTCTCGTCTATAAAATAGATGGACATTACCGCAATTGTGTCAATTTGACAAACCTCCATACATTCACTCGCCCGCGCGCACACACCACACAATTGCAGTCAGACGGGCTCCGGTTAGGAGATTCAGAAACGCTCAAGGATATTATCCCCCAAAACtttaaatcatggatttattttttattccacCACGAATTTGCTGGTGGAGGGTATTGTTTCTTTTGAGCATCTTTCAGGACTACTTGAGCAATATGCTGGACTGCCCGCCAACCTGCAGCTGTTCTCCAACTGAGATCTATTGCAATAAGTCTGACAATGGGAAATTCTTTCCTTTGCTTGCACTGCAAGATACTGGGAACAATGGAAATAACAGCATCGAAGATCTGTTCAAGAACATCACCTCAATACACATTGAGAACTGGACTGGCCTGCAGACCCTGaaggatgtggacatggagctgtACACTGGACTTCAGAGACTAACGATCATGAACGGCAACCTGCGCGGTATCCAGGCCAGAGCCTTCTCCCAGAACCCCCACCTCCGCTACATAAACTTATCGAAGAATCCTCTGACCACATTATCATGGCAACTCTTCCAGAATCTTCAACTCTTCGAGCTgagGCTGGAAGAAGTGGTGTTTGAGTGTGGCTGTGATATCCGCTGGATCCAGCTGTGGCAGCAGCGAGGGGAGGCTGGCCTGCACACCCAGCTGTTATTCTGCAACAACGGAGCCTCCAAGATCCCTCTCCAAGCTATGAATATCTCCCTCTGTGactTGCCGGACATTAGTGTGACCCACTATAATCTCACAGTGATTGAGGGGGACAGAGTCACCGTCACCTGTAATGGATCTGGATCCCCCCTCCCTGAGGTGGACTGGACCGTCAATGACCTCCACTCCATCAACACTCACCAGTCCAACGTGTACTGGCCCAATGTCCACTCCATCAACCTGACCCTGGTCAACGTGAGCCGTGATGACAACTTCTACATGCTGACCTGTATAGCAGAGAACAAAGTGGGGATGGCCAACGCCTCCATCCAGCTCACTGTCCATTTCCCCCCCACCATCCTGAAGCTAGACGAGCCCGAGCGTCGCCATGAAACCTGCATAGAGTTCACAGTGCGTGGTAACCCCCAGCCTACCCTGCGCTGGTTCCACCGGGACAAGGAGATCCCCCCCAGTGACTACATCCGCACTGAGATGGATACCTACCAGGACTACCTAGAGGGATGCCTCAACTTCAAGGACCCCACGCACCACAACAACGGCAACTACACTCTGGAAGCTAGCAACTTCCTAGGAGTCACCACCAAGACAGTGTATGGACACTTCCTCAACGCCCCGTTTTCAGACGGGACTCCAACACCGACCATCACAGTAACACACAGGCCTGAGGAGGACACATTCGGGGTGTCTATTGCTGTGGGCCTTGCTGGATTTGCCTGTGTCCTTCTTGTTGTCCTGTTTGTTCTCATCAACAAATATGGCCGACGTTCGAAGTTTGGAATGAAAGGACCAGTAGCAGTGATCAGTGGTGAGGAGGACTCGGCCAGCCCCCTGCACCATGTCAACCATGGCATCATCACCCCCTGTACCCTTGACGCGGGACCAGACGCTGTGGTCATCGGGATGACCCGTATCCCTGTCATTGAGAACCCGCAGTACTTCAGACACGGACACAACTGTAACAAGCCTGCTACCTacGTACAGCACATAAAGCGTCGGGACATCATTCTGAAGCGGGAGCTGGGAGAGGGGGCCTTTGGGAAGGTGTTTCTGGCAGAGTGCTATAACCTCAGCCCTACCAAGGACAAGATGCTGGTGGCTGTCAAGACGCTGAAGGACCCCACCCTTGTATTTTCTCAGACGCTGAAGGACCCCACCCTTGCAGCGAGAAAAGATTTCCAGAGGGAAGCGGAACTATTGACCAACCTGCAGCACGAGCACATTGTCAAGTTCTACGGCGTGTGTGTGGATGGAGACCCCCTCATCATGGTCTTTGAGTACATGAAGCACGGGGACCTCAACAAGTTTCTCAGAGCCCATGGGCCCGACGCTATGATCCTGGTTGACGGACAGCCGCTGCAGACCAATGGGGAGCTGGGCCTGTCTCAGATGCTGCACATTGCCACTCAGATCGCCGCGGGGATGATGTACCTGGCCTCCCAGCACTTTGTGCACCGTGATTTAGCCACTCGGAACTGCCTGGTGGGCAACGGCCTGCTGGTGAAGATTGGTGACTTTGGAATGTCCAGGGACATCTACAGCACAGACTACTACAGGGGCTGTGTGGGGGGCCACACCATGCTGCCCATCCGTTGGATGCCCCCTGAGAGCATCATGTACAGGAAGTTCACTACAGAGAGCGACGTGTGGAGCTTTGGCGTGATCCTCTGGGAGATCTTCACCTACGGGAAGCAGCCATGGTTTCAACTGGCCAACAATGAGGTCATCGAGTGTATTACGCAAGGACGGGTTTTGGAGAGGCCACGAGTTTGTCCCAAGGAGGTGTATGACATCATGTTGGGTTGCTGGCAGAGGGAGCCCCAGCAGAGGCTGAACATCAAGGATATCCAGAAAATCCTCTATGCCTTGGGCAAAGCCACGCCTGTCTACCTGGACATCCTGGGCTAGTGTACGTTGGGGTTTGTCTatctgtctgtttttctgtctgtctctacccaacAGATGAACAAAACCCCAGGAATAACCCAAACAACGAGCACCTTATTGCTCCACTGTCAAACACCTACAAAATGGGGATGGACTTAAGTGCCTGCTACTCCTTTCGATACACTGGATAACAGTATTTAAAAAAGCACTTTTACATTTTGTTTACCTGCATTTAAAATTGTACAGTTACTGAATACTGTATGAAGAGGACATTATTTCTTTTTTTGGTAAAAACAGCCTACTTAAAgtatcacaaaaaaaaaaaaaaaaaaaaaatgctagaAAATGACTCAATTACAAAAAGTACacagaaaaaaaaaaagctgaaaacCCTGGAAAAATGGTTTGCTTTTGGTATCCTGACAGCTTGACAGAAGATCAAACTCCCAGGTGATTTTCTTTTTcattttataaatatatattatatatattttttatttatttttattttcaacgTGTGGATATCTGCCATGTTTCTTGCTAAGGGTACTGTATGTCACCTGTTGGAGATGACCTCTTGTTATTGGCAAGTCAGACAATTGGCAGGGACTTTTTGAAGAAAGCCTTACTGCACTCCGATTGGCTGGATCTATTCTCTGACTCTGGATCCGACAAGGCGATTGGCTACTGAGAGGAAACAGCTTTTCATTGAGATGTGGAACTCATAGGGAAGACAGAGCCAACAATCAACACAGTCATCTTAATTTAAAATTgaatgtatatactgtaaattTCTATGTCACAAAAATATGTTAACTTATTTCATTTCCTATTTAGATTATTTTAGTTTCTTGGTGTGTTGTAATGGTGAGTGAATCCTATAGATATTTTGATAATCTTTCATTTGTGTTACTATTTtcttcacctggtcagtgtgtTGTTTCTGTTGCTTTTAATGAATTTAATTGTCTTATCATTTGATTTGGATATTTGATTACAATGTGACCTTACGAGTCAGGATGTTAGGTTGAGACATGAACAGGAAGTAGACTGTCAGTAGCGTAATCATGATGTGAGCTTAGACAGACTGAGCAGGATGCATACAGTTACAGTATGAATTTATGATGATCTTACATAGCGCCCCCACTTCCCCTCATTCCAGCTCACTGTTGTTCTTTCAGCGTAATCTAGTCTTAGATTTGCTCTCAGCCCCACATTCTGTATCACCATGTATCTCATGTACATCTAGCCAGAGCAAAGAGCTATAGCTATGATATAGCAGTATAAGCTGTCACTGGCTGTGTTCTGAAAATGACATTTATATGGCATTGTATTATACTTCATCTTGTTTTCCAGGTTGTGGATAATGTTATTCTACTGCCTTCAGATAGTCATGACTCTGATGTTTCAATTTCTGGAGTTTATACAGGAAATGTGCTACTAGACACTATACATTCATATAATAGTAGTAACTGCCTCTCATTTTCCATTCTCTGTACACGTACATTCAAGTTAAAGCATTATTGTAATGCAGGCTTGAGAATGTTTTCTTCTCTCAATGTGCGCAAGATTTCTGCAAACGATCCTTTATCTTTCTCAGCTCTCCCAATGTTAAACAATAGCAAACATGGCAGACCACAGTGACGTGAATTATTCATTACGTATTAGTGATGGAGCACTCTGTAGCTATGGGGGCTGTTTGGAACATTACGCTGTGATGACAAACACTGGGGCTTTGGGAGAAAGTGCTCCTCTCTCacgctcactctctctacctccctctctatcgctctctctcgctctccttcgctctctccttctctcgctctccttcgctctctctcctcttgcttacGCTGAGTAATGTAATCATTCAAGGTTGTGTTTAGTCTCAATAACACCCCAATGATAAATCCATAATTATTCAATGCTGAGCCAAACTGGCACCATGTTTTGCCTATCTTCATTTTTTTAACAAGGTGATATATTATTATGTGATCAATTTCATATTAACGTTTATGTACAGAATCATTTGCCTACttcaacaaaaatgtattttaaaagctTCAATATGAATTATCTGGTCAAACTTACAAATACTGTACTTTTCTTTCAAATTAAAAGTTCCTTCACGTTAGAATGGC

Function

GO: NA

KEGG:

id description
K05101 NTRK3, TRKC; neurotrophic tyrosine kinase, receptor type 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196692 lncRNA downstream 122 65110629 ~ 65111152 (-) True G172938
TU196691 lncRNA downstream 5553 65104540 ~ 65105721 (-) True G172937
TU196682 lncRNA downstream 17515 65093518 ~ 65093759 (-) True G172929
TU195785 lncRNA downstream 34720 65076289 ~ 65076554 (-) True G172129
TU195775 lncRNA downstream 41480 65069414 ~ 65069794 (-) True G172119
TU196877 lncRNA upstream 19475 65385474 ~ 65386709 (-) True G173123
TU196888 lncRNA upstream 41004 65407003 ~ 65407350 (-) True G173134
TU196960 lncRNA upstream 111222 65477221 ~ 65478048 (-) True G173191
TU196808 lncRNA upstream 121884 65487883 ~ 65488931 (-) True det1
TU196987 lncRNA upstream 158423 65524422 ~ 65525128 (-) True G173214
XM_021568319.2 mRNA downstream 263206 64802877 ~ 64848068 (-) False LOC110493816
XM_036953084.1 mRNA downstream 263206 64802877 ~ 64848068 (-) True LOC110493816
XR_005034529.1 mRNA downstream 332235 64777758 ~ 64779039 (-) True LOC118937287
XM_021568291.2 mRNA downstream 448760 64622371 ~ 64662514 (-) True sv2bb
XR_002469192.2 mRNA downstream 459932 64622371 ~ 64651342 (-) False sv2bb
XM_021568376.2 mRNA upstream 121388 65487387 ~ 65509066 (-) False det1
XM_021568384.2 mRNA upstream 121388 65487387 ~ 65509066 (-) False det1
XM_021568395.2 mRNA upstream 121388 65487387 ~ 65509066 (-) False det1
XM_021568404.2 mRNA upstream 121388 65487387 ~ 65509066 (-) False det1
XM_021568425.2 mRNA upstream 169280 65535279 ~ 65571025 (-) False zcchc14
TU195797 other downstream 25086 65085572 ~ 65086188 (-) True G172141
TU194766 other downstream 942876 64165963 ~ 64168398 (-) True tmem117
TU194598 other downstream 1147453 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 1960423 63146774 ~ 63150851 (-) True LOC110493507
TU191507 other downstream 3595618 61515237 ~ 61515656 (-) True G168141
TU196875 other upstream 17438 65383437 ~ 65383873 (-) True G173121
TU196928 other upstream 168472 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 168472 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 168472 65534471 ~ 65536781 (-) False zcchc14
TU196934 other upstream 168472 65534471 ~ 65536781 (-) False zcchc14

Expression Profile