RNA id: XM_021568376.2


Basic Information

Item Value
RNA id XM_021568376.2
length 5268
RNA type mRNA
GC content 0.44
exon number 6
gene id det1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65487387 ~ 65509066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGCTCTCTCTTCGCTTGTTATCTATCTAATGCTAACAACATGAAGCAGTGTTGAGAAAACACGATTCCTGTTCAGAACAAATGTTCCAAGCTTAACACATAATCGCATTTTATTGCCTGCCCCAAGACTAACTAACAAACGTTATTCCCGCATTTGATAATCTGATCGTTTTTGTGGCTAGATAGCATAACGTTACTGGCTTGACAAATTCACAGCAAGCAACAGTGGTTCAACTCTACCATTGAAATCGTGATGTAGAGGCATCTCAAGGTCGGGGTTCGGCATGAAATACACACCTTCTACTGACGCgttcaacacaactgggaactcggaaaaaaaccAGATCAAAATCATGAAGACAGACTTCAGGTTGGAAAGTCGAGTTGGATCAAAACgattttcccagtcggagttcGTTTTGGGCTAGTGAATGACTAGCTACAGATTGTACGCTAGATAATGTGATATAACCAAATATTTTTGGTGACCATTACTGGGTCTCAGGTAGCCTAGCGTGTTAGAAtgttaggccagtaaccaaaaggttcctAGTTCGAATCTCCTCACTGACAATGTGATACATTTGtcgatgtgtccttgagcaattCCCTACACCCTAATTGCTCCAAAGTTGCCATTGacaatggcagaccctggctgtgaccccactccaaGGGTGTCTCAaggagagttgggatatgcaaaaacacatttccaattcacacgtgtataatacacacttgtacatgtgtagTTGGataaatataagcacccaccaaattattattataaatgGCCGCgatagctttaaaaaaaaaacagcgaTAACTCAAGATATTAAATCTATGTCTTGTACCGTGCAAGGCGGTTCCTCGCCATCTTAGCTGCTGCACATCTAGAGCATTTCCCAGCATCTTTGCAGGAACTAGGGTGTAGTCGTTTCTATGCGTCACAGCCATGTGTAGAAGTAAATGTCTGCTCGTCACAATGCGACCAAAATAAATATCTACACACATACAAGAGACATATCTCACCCAATAAAAACCTGGATTTAATATCTTTCTGAATTGTCTATGGTTTTTGTAGAACCACCTGCAATTGGAAACGGACATTTCTAAGATACTTCATTCTCGATTCGGTGAAAAAAGTATCGCCAAGAACAGGTTAGTTATAAAAATCTATGGCGGTGGTTTGTATGGGGCTTTCCTGTAACAGCCAATAATGGACACCACAAATATTTGGTTATATCACATTATCAGGCATACAATCTGTAGCTAGTGAACAACATTACATCTGGGGTGCGTTCAGTACGACAGAACGATATTCAAAGTTTAATTAAACAGAAATGGTTCTATACAGAAGGACCAGGAGTTTAGCAATTTCAAATGACCACATCTTGCCACATCCACCAAATGGGAGCAAATGTACTTCAAAGGCTGTTAAAAAACAGTGCACGCTGTTTGGGGGAAATGTGTCATTCAGTACTACAAACTGTCACGAAACGTAGCGTTAAATCGAACTAAGGGCAgcccaggggtgtattcattagtcggacactattgcaaaacattttgcaccAAAACAAGATGATTTGCAATGGAAACCTATTCTAGAAATGACCTGTGTGATATGACAATGCTGATAAGCTGTTGCACTTTCAAATTAATTGTGTATTGATTTAATTGTCTTGTATTACTTCTTTAACTAGTTGCCATACAGAGAGATTTGTGATGTAGCTACCAGTTGGTGGGAGTTGGCAACAATCAAACAATGGAAGATGATTCCCCGACTCTGAAACCCAGGCGCATCCAGAACCAGAATGTGGTCCATCGACTGGAGCGGCGGCGGACCTTCTCTGGCCGGGCTGCAGCCCACTGGTACCGCGGGCGCTGCTTCCACCAGAACCTTTTCCCAAACTTCACTGTGGTAAATGTAGAGAAGCCTCCTTGCTTCCTACGCAAGTTCTCCCCAGATGGACGCTGCTTCATAGCCTTCTCCTCTGACCAGACCTCCTTGGAGATCTATGAGTACCAGGGCTGCCATGCAGCGGAGGATCTGCTGCTGGGGCAGGATGGGGAGACCCTGGCCAACGGCAATGACCAGCGCTCCCTCAACATCCGCGGCCGCCTCTTTGAGCGCTTCTTTTCCCTCCTGCACGTCACTAACGTGGCCTCCAATGGAGAGCACCTGAACCGAGAGTGCAGCCTGTTCACTGATGACTGTCGCTATGTGATCGTGGGCTCAGCGGTCTACGTGCCCGAGGAGCCCTCTCCACACTTCTTTGAGGTGTACCGCAACAACGAGTCTGTGACTCCCAACCCCCGCTCTCCTCTGGAGGACTACTCACTGCACGTCATTGACTTGCACACTGGCCGGCTTTGTGACACCAGGTCTTTTAGATGTGACAAGATCATCCTCTCGCACAACCAGGGACTCTACCTCTACCGTAACATACTGGCTGTTCTTTCTGTTCAGCAGCAGACAATCCATGTCTTTCAGGTGACATCagaggggttgtttctggacgtgCGGACCATCGGTCGTTTCTGCTACGAGGACGACCTCCTGACTCTGTCGGCGGTGTACACTGAGGCCCGGGCCGAGGGCCAGCCAGGCTTCTCCCGCCTCTACAAGGAGAAGACCATCAACTCCCTGAAGCACAGACTACTAGTCTACCTGTGGAGACGGGCCGAGAAGGACGGCAGCGCCACCGCCAAGCGACGCTTCTTCCAGTTCTTTGACCAGCTGAGACAACTGAGGATGTGGAAGATGCAGCTGCTGGATGAGCACCACCTCTTCATTAAATACACCAGCGAGGATGTGGTCACCCTGCGAGTCACTGACCCCTCCCAGCCCTCATTCTTTGTGGTGTACAACATGGTGTCGACAGAGGTGTTGGCGGTCTTTGAGAACACTTCTGACAAACTTCTGGAGCTGTTTGAGAACTTCTGTGACCTGTTTCGGAACGCTTCACTCCACAGCGAAGCTGTTCAGTTCCCCTGCTCAGCCTCCAGCAACAACTTTGCACGGCAGGTTCAGAGAAGGTTCAAAGACACCATAGTTAATGCAAAGTATGGCGGTCACACTGAGGCGGTGAGGAGGCTGCTGGGACAGCTGCCCATTAGTGCTCAGTCCTACAGCAGCAGCCCCTACCTGGATCTTTCCCTGTTCAGCTACGACGACAAGTGGGTATCTGTGATGGAGCGGCCCAAAACATGTGGAGACCACCCCATCCGATTTTATGCTCGAGACTCTGGATTGCTGAAGTTCAAGATCCAGGCAGGCCTGCTGGGCCGGCCCATTAACCATGCCGTCCGGCGGCTGGTGGCCTTCACATTCCACCCCTTTGAGCCGTTCGCCATCTCAGTACAGAGGACCAACGCTGAGTATGTGGTGAATTTCCATATGCGGCACGTCTGTATATGAGAGGAAAGCAGTGGACTAGACCTGAAGAACTGTGTAGAGCAAACAGCGGCCATTCTGCCTTTTTCTCTCCCCCTAGTGTGAGGAACAAAATAAGACTGGACTATGGGAGGATccagttgaagttgaaatggggagcttgggatgggggggggggggggtggattccTTTCAAGACCAAATATGTTTTGGCTTGCTCTCAAAATCTGCTTTTCCATATCACCACATACCTTTGTTTTTGGTCAAATTTTATTCTTacacatgtatttttattttgtgttttatttcAATAAGTGATTTAATCATTGATTGTGATTCTTTAAGGTTATTATGAATATTTTGCTAGAGTAAAAGCTATTTTTCATAATATGCTTTGCGGAGTGGACCTAGTTATTAGCCTGATTGCCCCCTTGTAGctcaggggcctcatttatataACCGTTCTACACTAAATATCTGCGTGCGGCATTTCTGAAAAGATTGCGCACGTACAAAAATATATGCATGTTTCCAGTTAGCTTTGGGACACAACATTGTGAGACACAGTCTTTATATTGGTTGCACTCCCTGAGTTGTGCATCGTTCTGGTGGGTGGTGACGGAAAATAATCCTAACACAATTTAGCTGGCTTCACCAAAACATTACGTTTCCTGTAAAGAAAACCATATGTATAGTCTCTAGAAACTCTACTTACCAGAAGTAAAGTGAAATGTGTCACTCGCTATCAAATAAACATCTGAATACAACTTTTGTTCAAACCACACCATATTCCTGCTGTGTAAACAGTTAGATTTTGTGGTAGGAAGTCTCGCATGAAGGTCTAATGGCAGCCCGCTGTCTAATTTCGCAGGAATATGGTGCGGTTTGGACAAAATTTGGATTCTGATGTTTATTTGACACAATTCACTTTACGTCTGGTAAGTAAAGTTCCTGGAGCTGGGTTCTCCAACCTATTCTAACATGAGAGCTACTTAAAAAAATGaactttttttaaaaacatgtcatgagttactctttttttttttatagcattCAAATAAGcacattcttctcttctcctctccccctcaacTCTTCCCAGGTCCTTGgtgtacaagagaaagtagtGCATGTTCTTTTGTcaatatacctggtaaaataatggttaataaacaACTCTGAGTGGGGCcctataaaataatattttttcccTCAAATTCGGTTTTTATATTTTCTCAAGTTGTTTTCTGAGTTTTATTTTTCCTGGTTTTAGATTGTTTTAATGTACTCTCAAAATTGCAATTGTTTATAGAGAAACAACGAAATTTGATGTTCTGAGTCAATGTCAATGATTAAATCACATCTGAAGACCATTTTTTTAAAGGTCTGGAAGTAATTCTACTTTAATTGTGCATCTGGCCCTTTAATTACGCATCTAGCAAATGAGGAGTGTGCTGGTCTGGAAATGgttctgtactgctgctgctcatttcaTGGCAAAGTTAGCAAATAACAAATAATACATACAAATGATATACATACTCGTGATatacttctgccaggtaagcctaTTCTGCGGATAACATTTAATTGACGGTTTTGGGGAAAGTATTAATGTCAACCCACAAGACGGTTATCACATCAACTGGCTACACACAGCGTGATAGACAAACGCGCGCAACACAGACAAGACAgggcaatattgctggaaattaattggCCGATATATGTTAGGTTGAGCTTTATATGCCAATAGTCgctaaccaggggtgggataatgtTGCGTTGATTAGATAGTAGCTGGGAACTTGGGGTGTCTGATTTGTTTATGACAGTATGCAGTGAAACACTGAACATTGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196960 lncRNA downstream 9339 65477221 ~ 65478048 (-) True G173191
TU196888 lncRNA downstream 80037 65407003 ~ 65407350 (-) True G173134
TU196877 lncRNA downstream 100678 65385474 ~ 65386709 (-) True G173123
TU196692 lncRNA downstream 376235 65110629 ~ 65111152 (-) True G172938
TU196691 lncRNA downstream 381666 65104540 ~ 65105721 (-) True G172937
TU196987 lncRNA upstream 15356 65524422 ~ 65525128 (-) True G173214
TU196930 lncRNA upstream 21845 65530911 ~ 65531432 (-) False zcchc14
TU196941 lncRNA upstream 27928 65536994 ~ 65539900 (-) True zcchc14
TU197012 lncRNA upstream 65309 65574375 ~ 65575315 (-) True G173239
TU196972 lncRNA upstream 99473 65608539 ~ 65620372 (-) True G173201
XM_021568341.2 mRNA downstream 121388 65111274 ~ 65365999 (-) True ntrk3a
XM_021568366.2 mRNA downstream 121389 65111274 ~ 65365998 (-) False ntrk3a
XM_036953120.1 mRNA downstream 121389 65111274 ~ 65365998 (-) False ntrk3a
XM_036953129.1 mRNA downstream 121389 65111274 ~ 65365998 (-) False ntrk3a
XM_036953144.1 mRNA downstream 121389 65111274 ~ 65365998 (-) False ntrk3a
XM_021568425.2 mRNA upstream 26213 65535279 ~ 65571025 (-) False zcchc14
XM_021568459.2 mRNA upstream 142013 65651079 ~ 65665571 (-) True klhdc4
XM_021568487.2 mRNA upstream 176195 65685261 ~ 65715957 (-) True slc7a5
XM_021568509.2 mRNA upstream 221665 65730731 ~ 65741201 (-) False LOC110493906
XM_021568500.2 mRNA upstream 221665 65730731 ~ 65752045 (-) True LOC110493906
TU196875 other downstream 103514 65383437 ~ 65383873 (-) True G173121
TU195797 other downstream 401199 65085572 ~ 65086188 (-) True G172141
TU194766 other downstream 1318989 64165963 ~ 64168398 (-) True tmem117
TU194598 other downstream 1523566 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 2336536 63146774 ~ 63150851 (-) True LOC110493507
TU196928 other upstream 25405 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 25405 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 25405 65534471 ~ 65536781 (-) False zcchc14
TU196934 other upstream 25405 65534471 ~ 65536781 (-) False zcchc14
TU196935 other upstream 25405 65534471 ~ 65536781 (-) False zcchc14

Expression Profile