RNA id: TU196808


Basic Information

Item Value
RNA id TU196808
length 1049
lncRNA type sense_over
GC content 0.46
exon number 1
gene id det1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65487387 ~ 65509066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAATCATTGATTGTGATTCTTTAAGGTTATTATGAATATTTTGCTAGAGTAAAAGCTATTTTTCATAATATGCTTTGCGGAGTGGACCTAGTTATTAGCCTGATTGCCCCCTTGTAGctcaggggcctcatttatataACCGTTCTACACTAAATATCTGCGTGCGGCATTTCTGAAAAGATTGCGCACGTACAAAAATATATGCATGTTTCCAGTTAGCTTTGGGACACAACATTGTGAGACACAGTCTTTATATTGGTTGCACTCCCTGAGTTGTGCATCGTTCTGGTGGGTGGTGACGGAAAATAATCCTAACACAATTTAGCTGGCTTCACCAAAACATTACGTTTCCTGTAAAGAAAACCATATGTATAGTCTCTAGAAACTCTACTTACCAGAAGTAAAGTGAAATGTGTCACTCGCTATCAAATAAACATCTGAATACAACTTTTGTTCAAACCACACCATATTCCTGCTGTGTAAACAGTTAGATTTTGTGGTAGGAAGTCTCGCATGAAGGTCTAATGGCAGCCCGCTGTCTAATTTCGCAGGAATATGGTGCGGTTTGGACAAAATTTGGATTCTGATGTTTATTTGACACAATTCACTTTACGTCTGGTAAGTAAAGTTCCTGGAGCTGGGTTCTCCAACCTATTCTAACATGAGAGCTACTTAAAAAAATGaactttttttaaaaacatgtcatgagttactctttttttttttatagcattCAAATAAGcacattcttctcttctcctctccccctcaacTCTTCCCAGGTCCTTGgtgtacaagagaaagtagtGCATGTTCTTTTGTcaatatacctggtaaaataatggttaataaacaACTCTGAGTGGGGCcctataaaataatattttttcccTCAAATTCGGTTTTTATATTTTCTCAAGTTGTTTTCTGAGTTTTATTTTTCCTGGTTTTAGATTGTTTTAATGTACTCTCAAAATTGCAATTGTTTATAGAGAAACAACGAAATTTGATGTTCTGAGTCAATGTCAATGATTAAATCACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196960 lncRNA downstream 9835 65477221 ~ 65478048 (-) True G173191
TU196888 lncRNA downstream 80533 65407003 ~ 65407350 (-) True G173134
TU196877 lncRNA downstream 101174 65385474 ~ 65386709 (-) True G173123
TU196692 lncRNA downstream 376731 65110629 ~ 65111152 (-) True G172938
TU196691 lncRNA downstream 382162 65104540 ~ 65105721 (-) True G172937
TU196987 lncRNA upstream 35491 65524422 ~ 65525128 (-) True G173214
TU196930 lncRNA upstream 41980 65530911 ~ 65531432 (-) False zcchc14
TU196941 lncRNA upstream 48063 65536994 ~ 65539900 (-) True zcchc14
TU197012 lncRNA upstream 85444 65574375 ~ 65575315 (-) True G173239
TU196972 lncRNA upstream 119608 65608539 ~ 65620372 (-) True G173201
XM_021568341.2 mRNA downstream 121884 65111274 ~ 65365999 (-) True ntrk3a
XM_036953120.1 mRNA downstream 121885 65111274 ~ 65365998 (-) False ntrk3a
XM_021568425.2 mRNA upstream 46348 65535279 ~ 65571025 (-) False zcchc14
XM_021568459.2 mRNA upstream 162148 65651079 ~ 65665571 (-) True klhdc4
XM_021568487.2 mRNA upstream 196330 65685261 ~ 65715957 (-) True slc7a5
XM_021568509.2 mRNA upstream 241800 65730731 ~ 65741201 (-) False LOC110493906
XM_021568500.2 mRNA upstream 241800 65730731 ~ 65752045 (-) True LOC110493906
TU196875 other downstream 104010 65383437 ~ 65383873 (-) True G173121
TU195797 other downstream 401695 65085572 ~ 65086188 (-) True G172141
TU194766 other downstream 1319485 64165963 ~ 64168398 (-) True tmem117
TU194598 other downstream 1524062 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 2337032 63146774 ~ 63150851 (-) True LOC110493507
TU196928 other upstream 45540 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 45540 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 45540 65534471 ~ 65536781 (-) False zcchc14
TU196934 other upstream 45540 65534471 ~ 65536781 (-) False zcchc14
TU196935 other upstream 45540 65534471 ~ 65536781 (-) False zcchc14

Expression Profile