RNA id: XM_036953227.1


Basic Information

Item Value
RNA id XM_036953227.1
length 2686
RNA type mRNA
GC content 0.43
exon number 4
gene id map1lc3b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65531126 ~ 65536787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctcagtgacgTCAAATATCAGCTGACTGGTTTGTTTCGCTATAGACTCCGCAGCAATCAGCAAAGAAGGAATAGCACAACATCAAAGGACTCAACTTCttattattacaaaaaaaactgGGCTTTGATCGCCCAAAAATTTACAACACctacatttaaatatattttcaattcaTACAGGGATCTTTTGCCTCGTTTACAAAACGGTTTGACCTGCGTGAAATATGCCTTCAGAGAAGACGTTCAAACAAAGGAGGACATTTGAGCAGAGAGTAGATGATGTGAGACTGATTCGAGAGCAGCACCCCAACAAGATCCCAGTCATCATCGAGAGATACAAGGGAGAGAAGCAGCTGCCCATCCTGGATAAAACCAAGTTCCTGGTTCCTGACCATGTCAATATGAGTGAGCTGATCAAAATCATCAGGAGGCGCCTCCAGCTGAACTCCAACCAGGCCTTCTTCCTGCTGGTGAACGGCCACAGCATGGTCTCCGTGTCGGCAGCCATCGCTGAGGTGTACGATCGCGAGAAGGACGATGATGGCTTCCTCTACATGGTGTACGCCTCGCAGGAGACCTTTGGAACCATAACCCCCCAGTAACAGCCTCCCACCTCCACACCATAGCTCGGACAATGatatcacctcctccctccttgaTTCTTCGTTCCTAAATACAGACCGATCCCCCTTGCCTTCCCTCGAACCCTTGCTTAAAACCTTAGCCAAGACAATGGGAACCAGACTGACCTCTTCTCCCATGCCCTTAAGGGCCCCTTATAGATATTAAAAGCCATGTCCTGCACCTTCTCATACTCGTACTGCCCACTACCCTTTACTCAAAACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCTGTACATTCATTACTCAACACCTCTCCCTGTACATTCATTACTCAACACCTCTCCCTGTACATCCATTACTCaacacctctccctgtccatcCATTACTCAACACCTCTCCATGTACATCCATTACTCAACACCTCTCCCTGTACATCCATTACTCAAAACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCTGTACATCCATTACTCAACACCTCTCCCCGTTCATCCATTACTCAACACCTCTCCCTGTTCATCCAGCCATGTGTTTAGGAAAAGAGATTCAATAGTTATCTTTGGGTTGTTTGGTGTATAGAATGGATTAGTATAGCAGAGATGATTGCCAGTTCAGGTTGAGTTCGACTCAAACAATTTACAGCTTAAATTCCTGCTTGAGTCCATCATGGTTGAGTTCAGTTATACAGAAATCTCCATATTTTATTTTCCACTTGTTGTGTTTGCTAAACTTGAATGAGCTCAGTATTTTGGATGAAGCTTCAATCACAACAGCTGTTGAGGAATTTTCTAACAGTTTAGTTAAAGCGTTGAATCCAGTTTGACAGACATGGGACAAACTACTTCCACAAGAACATGTTTCATCAAGTCTCCTATAATTGGTGACTCAGGCCAATGGTCTCAACTGCTGTGACAAAATGAGTGGTTCTTTTTTCTTTAGTCTTTCCTTTAGCAACTTGGTTGAATATTCTAGGCCAACTATAGGCTTCATTGTATTAACACACGTTTTTGAGGCTAACATGTTAATGTGCGTTCAGTTTAGCAGTTCCCCTCCCCCTGTGTTGCTCTGTTGAGCTACTTGATGAGGGTTGTGGGTTCAGAGATTATTTTACTTTGCACCTTTCAAAAAATTCAATAAAAATGAAGGTCCTTtcgacaacaaaaaaaaatcttccCGCGCTTTGTTGTAAACGTCTCCACGTAGAAGAGATGTTAGGGACTCCTggttaaaaaggaaagaaatgcTACCGAAAACCTGCTATGATGATTGTTATAAGAAATTTGCCTCCATGTACAGCATGATGATCGAATTGCACGTGTGTGAAAGGGTCACTGATGTGGGATAATGCTGATGTCAGAAGTAGGGTGTGGGGTTGGTGGCTGTTTTGGACTGGGCGGGCATCACGGCCGGGTCTGTCCACCAACCAACTGTCCATCCGTCCCCCTCCTAGACCTGCCCTAGGGCTCTGAACAGTACTCATCCCAGGGTGGCGTCACGCTTTTAGAATATTCAATTTGTTTAATAGAGGGTTATTTATGCCTTTTATAATGTGTGCTGACTGTTGTGCTTTTCCTTCTCGCTGTCCTCTCAACTGTTTAAATGTTAGATAGCTTTTTAGCTTCATTTATGGCAGATAatctttgtttttatttaatgtgATGTTACTTCCTTGTACAAATGTCCATatgatatatgtgtgtgtaatgaaTACGAATGATTCTATGATCAGTTTGATTGAGGGTTTAATAACAGAGGAATGATAACAGTTTTATCAGCCCAATGTTCCTCTGCATGCTCTGCTGTTTGCCGCTCTCAATCTTCATATTCACAGCAATATTACACAGCCTTTTATTGTATTTGTTGGTATTTTATGAATAAAACAGACAATGTAAAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196051 lncRNA upstream 42257 65488039 ~ 65488869 (+) True G172389
TU196050 lncRNA upstream 46690 65483075 ~ 65484436 (+) True G172388
TU196049 lncRNA upstream 48055 65482621 ~ 65483071 (+) True G172387
TU196048 lncRNA upstream 48665 65482192 ~ 65482461 (+) True G172386
TU196047 lncRNA upstream 48984 65481723 ~ 65482142 (+) True G172385
TU196150 lncRNA downstream 77440 65614222 ~ 65618491 (+) True G172472
TU196151 lncRNA downstream 78955 65615737 ~ 65617095 (+) False G172473
TU196152 lncRNA downstream 78955 65615737 ~ 65617761 (+) True G172473
TU196177 lncRNA downstream 125058 65661840 ~ 65662637 (+) True G172495
TU196181 lncRNA downstream 131735 65668517 ~ 65668744 (+) True G172499
XM_036953106.1 mRNA upstream 506261 64866284 ~ 65024865 (+) False LOC110493825
XM_036953095.1 mRNA upstream 506261 64866285 ~ 65024865 (+) True LOC110493825
XM_036953032.1 mRNA upstream 771733 64666137 ~ 64759393 (+) False akap13
XM_021568438.2 mRNA downstream 56686 65593468 ~ 65648660 (+) False jph3
XM_021568445.2 mRNA downstream 56686 65593468 ~ 65648660 (+) False jph3
XM_021568559.2 mRNA downstream 255807 65792589 ~ 65801972 (+) True lcat
XM_021568592.2 mRNA downstream 275448 65812230 ~ 65821040 (+) True pla2g15
XM_021568579.2 mRNA downstream 293333 65830115 ~ 65839097 (+) False znf319b
TU193612 other upstream 1652893 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 1700806 63820461 ~ 63830320 (+) True G170131
TU192528 other upstream 2745483 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 3650702 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 3803672 61726959 ~ 61727454 (+) True G167609
TU196056 other downstream 56735 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 56735 65593517 ~ 65640976 (+) True jph3
TU196344 other downstream 398814 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 725844 66262626 ~ 66266023 (+) True LOC110494096
TU197812 other downstream 1205038 66741820 ~ 66742213 (+) True G173938

Expression Profile