RNA id: TU196931


Basic Information

Item Value
RNA id TU196931
length 2227
RNA type TUCP
GC content 0.43
exon number 2
gene id zcchc14
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65530911 ~ 65571025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTTTACATTGTCTGTTTTATTCATAAAATACCAACAAATACAATAAAAGGCTGTGTAATATTGCTGTGAATATGAAGATTGAGAGCGGCAAACAGCAGAGCATGCAGAGGAACATTGGGCTGATAAAACTGTTATCATTCCTCTGTTATTAAACCCTCAATCAAACTGATCATAGAATCATTCGTAttcattacacacacatatatcatATGGACATTTGTACAAGGAAGTAACATcacattaaataaaaacaaagatTATCTGCCATAAATGAAGCTAAAAAGCTATCTAACATTTAAACAGTTGAGAGGACAGCGAGAAGGAAAAGCACAACAGTCAGCACACATTATAAAAGGCATAAATAACCCTCTATTAAACAAATTGAATATTCTAAAAGCGTGACGCCACCCTGGGATGAGTACTGTTCAGAGCCCTAGGGCAGGTCTAGGAGGGGGACGGATGGACAGTTGGTTGGTGGACAGACCCGGCCGTGATGCCCGCCCAGTCCAAAACAGCCACCAACCCCACACCCTACTTCTGACATCAGCATTATCCCACATCAGTGACCCTTTCACACACGTGCAATTCGATCATCATGCTGTACATGGAGGCAAATTTCTTATAACAATCATCATAGCAGGTTTTCGGTAgcatttctttcctttttaaccAGGAGTCCCTAACATCTCTTCTACGTGGAGACGTTTACAACAAAGCGCGggaagatttttttttgttgtcgaAAGGACCTTCATTTTTATTGAATTTTTTGAAAGGTGCAAAGTAAAATAATCTCTGAACCCACAACCCTCATCAAGTAGCTCAACAGAGCAACACAGGGGGAGGGGAACTGCTAAACTGAACGCACATTAACATGTTAGCCTCAAAAACGTGTGTTAATACAATGAAGCCTATAGTTGGCCTAGAATATTCAACCAAGTTGCTAAAGGAAAGACTAAAGAAAAAAGAACCACTCATTTTGTCACAGCAGTTGAGACCATTGGCCTGAGTCACCAATTATAGGAGACTTGATGAAACATGTTCTTGTGGAAGTAGTTTGTCCCATGTCTGTCAAACTGGATTCAACGCTTTAACTAAACTGTTAGAAAATTCCTCAACAGCTGTTGTGATTGAAGCTTCATCCAAAATACTGAGCTCATTCAAGTTTAGCAAACACAACAAGTGGAAAATAAAATATGGAGATTTCTGTATAACTGAACTCAACCATGATGGACTCAAGCAGGAATTTAAGCTGTAAATTGTTTGAGTCGAACTCAACCTGAACTGGCAATCATCTCTGCTATACTAATCCATTCTATACACCAAACAACCCAAAGATAACTATTGAATCTCTTTTCCTAAACACATGGCTGGATGAACAGGGAGAGGTGTTGAGTAATGGATGAACGGGGAGAGGTGTTGAGTAATGGATGTACAGGGAGAGGTGTTGAGTAATGGATGTACAGGGAGAGGTGTTGAGTAATGGATGTACAGGGAGAGGTTTTGAGTAATGGATGTACAGGGAGAGGTGTTGAGTAATGGATGTACATGGAGAGGTGTTGAGTAATGgatggacagggagaggtgttGAGTAATGGATGTACAGGGAGAGGTGTTGAGTAATGAATGTACAGGGAGAGGTGTTGAGTAATGGATGTACAGGGAGAGGTGTTGAGTAATGGATGTACAGGGAGAGGTGTTGAGTAATGGATGTACAGGGAGAGGTGTTGAGTAATGGATGTACAGGGAGAGGTTTTGAGTAAAGGGTAGTGGGCAGTACGAGTATGAGAAGGTGCAGGACATGGCTTTTAATATCTATAAGGGGCCCTTAAGGGCATGGGAGAAGAGGTCAGTCTGGTTCCCATTGTCTTGGCTAAGGTTTTAAGCAAGGGTTCGAGGGAAGGCAAGGGGGATCGGTCTGTATTTAGGAACGAAGAAtcaaggagggaggaggtgatatCATTGTCCGAGCTATGGTGTGGAGGTGGGAGGCTGTTACTGGGGGGTTATGGTTCCAAAGGTCTCCTGCGAGGCGTACACCATGTAGAGGAAGCCATCATCGTCCTTCTCGCGATCGTACACCTCAGCGATGGCTGCCGACACGGAGACCATGCTGTGGCCGTTCACCAGCAGGAAGAAGGCCTGGTTGGAGTTCAGCTGGAGGCGCCTCCTAGTGAGGGCAAACATACAGAGTTTAGCACATCTTATCCTCACATAGACAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196930 lncRNA downstream 3039 65530911 ~ 65531432 (-) False zcchc14
TU196987 lncRNA downstream 9343 65524422 ~ 65525128 (-) True G173214
TU196808 lncRNA downstream 45540 65487883 ~ 65488931 (-) True det1
TU196960 lncRNA downstream 56423 65477221 ~ 65478048 (-) True G173191
TU196888 lncRNA downstream 127121 65407003 ~ 65407350 (-) True G173134
TU196941 lncRNA upstream 213 65536994 ~ 65539900 (-) True zcchc14
TU197012 lncRNA upstream 37594 65574375 ~ 65575315 (-) True G173239
TU196972 lncRNA upstream 71758 65608539 ~ 65620372 (-) True G173201
TU197074 lncRNA upstream 117851 65654632 ~ 65658304 (-) True G173293
TU197078 lncRNA upstream 125071 65661852 ~ 65662637 (-) True G173297
XM_021568376.2 mRNA downstream 25405 65487387 ~ 65509066 (-) False det1
XM_021568384.2 mRNA downstream 25405 65487387 ~ 65509066 (-) False det1
XM_021568395.2 mRNA downstream 25405 65487387 ~ 65509066 (-) False det1
XM_021568404.2 mRNA downstream 25405 65487387 ~ 65509066 (-) False det1
XM_021568341.2 mRNA downstream 168472 65111274 ~ 65365999 (-) True ntrk3a
XM_021568459.2 mRNA upstream 114298 65651079 ~ 65665571 (-) True klhdc4
XM_021568487.2 mRNA upstream 148480 65685261 ~ 65715957 (-) True slc7a5
XM_021568509.2 mRNA upstream 193950 65730731 ~ 65741201 (-) False LOC110493906
XM_021568500.2 mRNA upstream 193950 65730731 ~ 65752045 (-) True LOC110493906
XM_021568519.2 mRNA upstream 225940 65762721 ~ 65778516 (-) True LOC110493917
TU196875 other downstream 150598 65383437 ~ 65383873 (-) True G173121
TU195797 other downstream 448283 65085572 ~ 65086188 (-) True G172141
TU194766 other downstream 1366073 64165963 ~ 64168398 (-) True tmem117
TU194598 other downstream 1570650 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 2383620 63146774 ~ 63150851 (-) True LOC110493507
TU197163 other upstream 296560 65833341 ~ 65839074 (-) False G173370
TU197164 other upstream 296560 65833341 ~ 65839074 (-) True G173370
TU197229 other upstream 385069 65921850 ~ 65922229 (-) True G173431
TU197458 other upstream 741040 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 798631 66335412 ~ 66338386 (-) True G173675

Expression Profile