RNA id: TU196941


Basic Information

Item Value
RNA id TU196941
length 2774
lncRNA type sense_over
GC content 0.51
exon number 2
gene id zcchc14
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65530911 ~ 65571025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCCTCATGGGGGGGTGGGGAACGGAGGGCATAGGAAGCCAGGGAGCTTGTCCTGCTACAACTGTGGGGTCACCGGCCATCGGGCACAGGACTGCAAGCAGCCACCCATGGACGCTGCTCAGCAAGGCACGTTCCGGCTGAAGTATGCTCCCAAATCAGACAGCCAGGACTCTGGGGACTAAGAACAAGGAACTCCTGTGACCCCTGTACACATCAGCACCTTATGATCCTCCTGGTAGAGGAGTCCCTTTCATTTAGGTAACTCTTTGACTCTTTGAACACACTTTGATGATTGGAGAATGAATGGTGGCCTGAGGCCACTTAACTCAACTGATGAAAGTCAAAGCATGGAGTCCGTTTGGAAGGAGATATTAACCCCCAGTCCATCTGTAACGTATGATTTTGATCATACCAAATACAAGAGATGGTCAGGTCTAAACCCTGAGGCCGAGGGTATACAGTGTTTTCGAATGGGAAATGATTTAGCTGTACAAAATCCACAGTTGAAAATATGATGCAATACTTCTCACACTACTTGGTACACACCTCAGCCTCACTCAGTCAATCGGTCAAACTCCACAGACCTACACCTTTCATAACAACTCATGCGGTATGCAAAGATGTCCTCTTAAGTCGCTCTGGAGATGAGTTGGATGTATCTGAGAGGATGCTGATGTGTGAATGTAAAGACTTACAGTATAATATGACTGCCAAATAACGcacattgactgactgactaccaAATCCTTCTCCTCTGGGACAGAGCAGGTCTGTGAGaaacacagaggaagagaagCGAGTGCTTTATTCTTCACATCATTCGCTGTGGGTACTTTGCCCTATACAGTGCAGGTATTAATGGTGAAAGAAATGGTGCGAGCATTCTTAGTTTAGATTTTAAGATGTGCCATTGATATTTGTGTTGTTTAATCATTTAGAAGTTGGAGCAGTCTAATTTTATAATCATTGTCAAAATGTGTGTAGGTTTTAGTTGTATGTATAAGGTTATGTATGTTTGATTTTATAATAGTTGGATTTGATGTGGTGAGGTGGTGCTATGTAAGAGGATCCTTTTTGAAAAAGATTTGATATTGAATGTCAGTGAATGTGTCCTTGAGTTGCCACCATGGTGTGGCATGTGAAAGCACTTTTATGAGATCGGCTGGTCCCAGTCCATTGGATGCGAGTGTGACATGAGGACCGTAGTCCTCAAGGATGGACAAGTTATTATCATTTTTTTGTGTTGCACTGGAATGTTCCTAGCCAGGTCTGGAGGACACAATTCAGTCATAAGGGACATTTTGTTGAAAATGATGTTTATGAAATGCTCGGGGCCATGACTGAATTCAAACTGAGTTGGTtttggggtgtggtttgatgtgggtgtcttTTGTGTGTGTTCGCAGGTGGGAAGAGTTAGCCAAATTATTTTGCCAATTTGCTTCAGCCAGCTTGTCCGCAACCTCTGCAAAGTTGATTTGACTTTAGATAGCCTATCTTCTgggctagttagggaccgtcaataaATGACACAATATAAATTAGACAATATTTTCATTTTCAtcaaatgctttcaatatttgcatatgaatttctacaatttatattTGGTTTGATGTTTTAAGTCATTGAAATGTGGAGCTATTGAATTCTTACAGATGGTCCATAactagccccatagggatatcCAAAGTCAACCCAATTTTACCACAGGCATTACGATTGTGTTGCGTGCAGCTCCACTCTGAATTGATGATTACTTGTGTGCAGTCAACTGTGGGCACATGGGCAGGATTTAAACAAACCCAATCTTCATTTACATTGTGATGCAGTCACGACCATAACACTTACAAAACTCTGTTTTAGACAAggctgactttatgaccaaaatgatcctattcACACTtcgtagtcaattttgacagtataataaatgtttctgactcattcTGATGCCACATATGCTGTTTTCTAAATGATACGTTTTTTTAGGGGCTGTTGCTCTTTAAGACTGACAAAATCAGGATCCTTTGGTTGAAACAGGAAACAGATTTACAGTAGTTATATTCTGCTGGATGTGATTTGGTCTGAGGACCAAAGAACAAGGAATTGTAGGGCCCAATCAAGGATTGTATCTGACCATCTGTAGAGTATTGCATGCTGGCGAATGTTGTATTTTTAAAAAGTGTCAAAGCTTTGTGGTCAAACCTTTTCACCACATCTGTACTGTCTAGTTCTCATGGGAGTAATAGAGCTTACAGTGAGAACATTACTGTAACAGTACACCACATACAGAACTAGcatgcatttttttaaatatattttttgttacattgtgcctaatgaatacaccctggTTCACGCTGCAAACATTGTGTAAACCAACTGTTTTCATTATATCATTCAAATGAAAAAAAGAGTGATATGATTGACTATTGGAAATCATGTTTGTGCACTAAGCCGTTTATCCTGGATGTCTTAGCCACCCTGCATGGTACAATCATTTACTAAAGAAAATGTATGGACATAATAAAATGACACCATATTTTTTTGATTCTGGAACTGGTTCACCTTACTTGGTTCCAATGAGGTTGTTGTCAAACATACATGACACCCCCCTGTCCAAAAGAAAAATCTAATTATCTGGTATTATTTGAATGTAACATCTTAGTCAATAGCTACGCATGTTGCTTGATCTCAAGTAAACATTTTGTGCATTTAAAAAGGAGTTAAAACATTTGGTATTATTTTGAAGCAGATTTGAGCTTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196930 lncRNA downstream 5562 65530911 ~ 65531432 (-) False zcchc14
TU196987 lncRNA downstream 11866 65524422 ~ 65525128 (-) True G173214
TU196808 lncRNA downstream 48063 65487883 ~ 65488931 (-) True det1
TU196960 lncRNA downstream 58946 65477221 ~ 65478048 (-) True G173191
TU196888 lncRNA downstream 129644 65407003 ~ 65407350 (-) True G173134
TU197012 lncRNA upstream 34475 65574375 ~ 65575315 (-) True G173239
TU196972 lncRNA upstream 68639 65608539 ~ 65620372 (-) True G173201
TU197074 lncRNA upstream 114732 65654632 ~ 65658304 (-) True G173293
TU197078 lncRNA upstream 121952 65661852 ~ 65662637 (-) True G173297
TU197090 lncRNA upstream 153884 65693784 ~ 65694028 (-) True G173309
XM_021568376.2 mRNA downstream 27928 65487387 ~ 65509066 (-) False det1
XM_021568384.2 mRNA downstream 27928 65487387 ~ 65509066 (-) False det1
XM_021568395.2 mRNA downstream 27928 65487387 ~ 65509066 (-) False det1
XM_021568404.2 mRNA downstream 27928 65487387 ~ 65509066 (-) False det1
XM_021568341.2 mRNA downstream 170995 65111274 ~ 65365999 (-) True ntrk3a
XM_021568459.2 mRNA upstream 111179 65651079 ~ 65665571 (-) True klhdc4
XM_021568487.2 mRNA upstream 145361 65685261 ~ 65715957 (-) True slc7a5
XM_021568509.2 mRNA upstream 190831 65730731 ~ 65741201 (-) False LOC110493906
XM_021568500.2 mRNA upstream 190831 65730731 ~ 65752045 (-) True LOC110493906
XM_021568519.2 mRNA upstream 222821 65762721 ~ 65778516 (-) True LOC110493917
TU196928 other downstream 213 65534471 ~ 65536781 (-) False zcchc14
TU196931 other downstream 213 65534471 ~ 65536781 (-) False zcchc14
TU196932 other downstream 213 65534471 ~ 65536781 (-) False zcchc14
TU196934 other downstream 213 65534471 ~ 65536781 (-) False zcchc14
TU196935 other downstream 213 65534471 ~ 65536781 (-) False zcchc14
TU197163 other upstream 293441 65833341 ~ 65839074 (-) False G173370
TU197164 other upstream 293441 65833341 ~ 65839074 (-) True G173370
TU197229 other upstream 381950 65921850 ~ 65922229 (-) True G173431
TU197458 other upstream 737921 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 795512 66335412 ~ 66338386 (-) True G173675

Expression Profile