RNA id: XM_021568438.2


Basic Information

Item Value
RNA id XM_021568438.2
length 7238
RNA type mRNA
GC content 0.48
exon number 5
gene id jph3
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65593468 ~ 65648660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGAGGAGATTTGagagacaccagagagagagagagagggagagagagacccaacCATAAGGAGAAAGGGGGAATGAGATGACAACAGAATGCAGGCTGTGATACATAAAAGAGCATGATGTATTGAATCAAAGGAAAAGGAGAAATAAATCTGGATTTCTCACCGGCAAGGGAGCAAGAATAAAAGCATCAGTATCGCTAAACCACTTAAGGACGTGGattaaaaaagagagagggaaagggaaaggagaggaggaaaataaTCAGATCACTTGTTTATTTTCATGGTCCGTGTGCGCACTTGCTGTCGGTGagagtgtgcatatgtgtgtgcgcATATGGGAAGAGACTGCATTGCTGTTCACTAGCAGAGGCATCAGGAGAGAACCAAGCTGAAtccctctttttttctttctctctctctatttctgtgttGCACTGTGTGGCAGGAGCATGTTGGGTGGGTTGAGTACAAACGACAAGCTGAGCTAGCCAAAAGAGATGGACCTGTAACGCTGTAAATGCTGTTGGATCTGGCCAGTGGCTGCGTGGGATCCCAGGTTTCTAGGTGGAGCCTGGTGGTCTTCAGCTGCTAGGGAGAGTTAAAGCTAAAAGCCCCAGAGAGGAGGAGGCACAAGTATCTGGGAGTGTGCCGGCAGTGGGGCCCTGCGTGGAGGGAGGGGGCCTGAACCTAAACCCCAAAGAAAAGGAGTTTGCTGCGTTTGTGTTGGCAGGGAGGACGCATGGCTGGCGTGGGCCTTCCCCCTTCTGTGAGCTGCAGCTGTAGGAGATTGGACCGGGAGTGAAAGTGAACCAAACCTCCAGGATAATGGTTTGAAGAGGTTCCCGCTGCTCCTCCCTGGCCTGACAGGAGGGACCCTACACTCTGGGGGTCTATTTTGCTTTTTCCtctttttatttttctctttaaGTCAACCCGGGGGATTTGTTTGGGTGTCTTCCTCCCCCCCacacctcatcatcatcatcatcactaaccCCACCTCCATCTCTGTTTTtagtttgttttctttttttgagATTTGGGGGATTTGCCAAAACCTATTTCATGCATGTCCACTGGGGGCAGGTTCAACTTTGATGATGGGGGGTCATACTGTGGGGGGTGGGAGGAAGGCAAAGCCCACGGCCATGGCATCTGTACTGGGCCGAAGGGCCAAGGCGAGTACTCAGGGTCCTGGAGCCATGGCTTTGAGGTGGTGGGGGTGTACACATGGCCCAGTGGGAACACCTACCAGGGCACCTGGGCGCAGGGCAAGCGCCATGGGATTGGAATGGAGAACAAGGGCAAGTGGGTGTATAAGGGGGAGTGGACAAGTGGATTTAAGGGACGCTACGGCCTCAGGGAGAGCACCGGCACCAGCGGGAAGTACGAGGGGACCTGGAACAACGGTCTTCAGGACGGATACGGCACTGAGACCTACTCCGATGGAGGTACGTACCAAGGCCAGTGGGTGGGGGGGATGCGGCATGGATACGGCATGCGGCAGAGTGTGCCATACGGCATGGCAGCCGTCATCCGCTCTCCGCTGCGTACCTCCATAAACTCCTTGCGCTCGGAGCACAGTAACGGGACGGCTCTGCTCACGGACCGGGCCGGCGTGGGGAGTGTGGGCGGGACAGGCTCCACCAGCAGTCCGGCAGTGTCGCGGGGGGGCTTCGTGCTCACTGCTCACAGCGAGGCAGAGCTGCTGAAGGGCAAGAAAAAGGGTCTGTTCCGAGGTCGCTCCATCCTCAGCGGACTCAAACTGAGGAAGTCAGAGTCCAAGAGCTCCCTGGCCAGCCAGCGCTCCAAGCAGAGCTCGTTCCGCAGTGAGGCGGGCATGAGCACGGTAAGCTCGGTAAACTCTGACATCAACTCCACCATCAGCCTGGGAGAGGGCGAAGCCGAGCTGGCCGTCGCCGAGGACGATGTGGACGCCACGGCAACGGAGACCTACTGCGGCGAGTGGAAGAACGACAAGCGCACGGGCTGTGGGGTGAGCCGGCGCTCGGACGGCCTGCACTATGAGGGTGAGTGGGTGGGAAACAAGCGGCACGGGTACGGCTGCACCACCTTCCCTGACGGGACCAAGGAGGAGGGCAAGTACAAGCAGAACGTCCTGGTGAGCGGCAAAAGGAAGAACCTAATCCCCCTCCGAGCCAGTAAGATCAGAGAGAAGGTGGACCGGGCTGTGGACACGGCCGAAAAGGCTGCGGACATCGCCAATCAGAAGGCTGAGATCGCCATGTCCAGgACGGCCCATGCACGGGGAAAGGCGGAGGCGGCCATGGGAGCCAGCCAGAAGGCCCAGGAGGAGTGTCGCCTCGCCAGGGTCACCGCCAAAGGGTTCTCCCCCTCCTTCCAGCACCGCGAAAACGGAGTAGAGGTCCAAAGGCCAAAGCATCAGAACTCCAGTGAGAACGACATTGAGGTGATCTCCAGTGGCACGGGGCCAGACAGTCCTGAACTCTACATAAAGGGCACCACACCCCCCAACCTGACCCCTGACCTTAGTCCTGAGGCCAGCCACCCCTCCTCGCCCCCCTGCAGCCCCACCACCTCCAAGCCATACCGCACCAAGAACGCACGCTTCCTGCGGCAGAGTGCTGTGGACGACGCTGGGGGTGGTGGCGGTGGGGGAGGGGGCGGTGGGGGTGGGAGAGGGGGCAGTGGTGGCCAGGAGATCCAGGTGCTAATGGAGGGCCGTGGAGGAGGGGAGTACCTAAGGGCCAACAGCTGGAGCGAGGACAAACGCTCTTCTAAAGAGGGCAGCAGGGGGGGCAGCAGGGGCAGCAGTCGCTCCACCACCCCCTCTGTCCAGGACGAGGCCAGGGGCCGCACCAACGGCCACGGCCATAAGCATGCCTCCTCCAATCACAAGTCTCGAGAGCATGGCTCGTCCAATCACAAGGCCTCCAGGGACCGATGGTCGGACTGCCCGTCGGCATCGTGGAGGTCCCAGCGGACGCACAGCGGTGACACGCGGCTGCTGGAGCAGGATGAGGAGAAGCTGAGCAACTACGAGATGGAGATGAGGCCGCTGCAGCCCATGGACTCCAACTCCCAGAAGCCTTATGGGTTGGGAGAGGAGCACCATGGTCACAGTGGCGAGGCCCGCTCCCACACGCTGCAGAGACAGCGGCCTTCTAAGACCCGGGAGGCCAGGGAGGGCAGGGAAAGGGAGGCAGCACGGCCGTCAGGAGCACGGGAGGgcaaagagagaaaggagggaccgGCCCCAGACTCAATGCAAAAGCTGGACAGTCTGAGCAAGGGGGACAAGTTGGAGGCTCGGCCTCTGCGCAGGgatctcaccctctcccccccacAGAAATCCTCACCCATTGCACTAGAACACGACGACGACAAGAAACTAACCCAGCTCAAAGCAAACTCGgGCTCCAGCTCAATTCTGGTCATCATGGTGATTTTGCTCAACATTGGAGTTGCAATTTTGTTTATTcacttttttatttaaaaatggaTTGCCTATTAATTCCTATTATTATCTATGCTATTATTATAACATATTATGAGTATTATCATGACTATACAGCCCTTGGGCATTTGACACAATGTAAAGAGTACAGTAAGAGGATTAACAATATGGGGATAAAGCTGGTTCCCAATGCCCAGATGAAAGATAAGCAGtgatctgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgtaattctttCTCTCCCTGACATTACCTGTTTTTCATCATAAATCAATGTTTAAAAAAGGTTTGTAACTTATAATTTAACTTATTAATTTGCTCACGTATGATATATtcatttaaattattttttattccTTACTTGCCTTTTCTCTGTTAATATTGCTGATGTTCTTTtggtttagtttgtctggaatgGTAGACTCAGATGAGCACTTCTTGTATAATGGTGTAGCGGGTCGAATGAGACAGGATATAATGTATCTAGTCTGGTTATGGCTGTGTCCACCTGACCTGGGTTCAAAAACTATTTGACATAATTTAAAATTAtttagctgtgcttgattgagcttgcctgttgcACTGGAAACAATAGAAACGTCTGAAAAGTGCAAAACCCTGCCTACCTGGTGGTtgaggcaggctaaagcaaatgctgaaagtatttgaaagatttcaagtagtatttgaacccaggcgtGTTGTCCACCCAGGTAATACAATGTTAAAGGGATGGGAAATGGACCCCTGTCCTACCCACTGCCCTCcaatccctcccccttctctccctcctgacaCGTTGTTCCTCTTCCCAATTATTAATTcagtctctcttccccccttaCTCCCCTTCCCGGTAGTCCCCTCATGACATCACGCCGTATCCTGTTACCCCTTTATTTGTTTCATGTAACTCTCCTTTTATTCAATCCTGCACCATGCTCCCCTATTCCTACAACCAGCCATCTTAACCAAGACTTCCCCAAATAGACCAGAGAATGTCCATGGCAAGCAGGTGTTTCATGAAAAATGaaacaacatatatatatatagatatgatTAAATAAAATAGGGCTACAAAAACACTTTTGCAACTACAGATCCTAGTTAGCAACAGGACATGTTTACAATCTGAAAAACCGGGATGACCAACACAAAATTGCCTCTAACAACTATAGCACCATAAAACCTATCTATGTTAGAAAACCTGTTGCAAATTTAGCAACTTGGGTTACCAAGATTGAGCCATGTGCAAATAACAAATAACTACTGTATATCAACTCTAATCTGTCTGCAACTGGAGTAGGAATAGTTTTGTCTGAAAGGGCTTCTAATGTGAAAGATTCTCTTTATAGTCAACATACAACAAAATGAACAAATTATCTAAAGGAAAgaactctcaaacacacacacacacacattgtacaaTACCATGTACACAACAGGTACAATACTCCCACACATACAGTGGTATGTGAATGATAAGCTATATTCATATAAAATATTGACATTCCAAAAAACTTTCTCAATGTCTCTCTGGCCTTTAACGCACAGGTTGAACTTTATATGAGGACTAGCGAATAACATTCTGTCAGTTCTCATCTATCTGCTCCTCTGTCCCCTACAgagccgttctctctctctctctctctctctctctctctctctctctctatctatctctatatctatctatctatctatctatctatctatctatctatctacagtatcatgTCTAAAGGTTTCTACCCAAACCTGACCCCACAcacctggtctggtctggaggcACTCGCTGGCCGTACTGTAAGAGGCCTAGTGCAAGTTCAGAGACTGTTATGTTTAAAACTGCTGCTTTCAAAACAAATGATTTACCAAGAcagaaaaaaaatcatatttttgaGCTATTTGCAAGACTTCTGAAGAAACGCCTACTGCCTTGTTTTATAAAGttgaaaaaaatatctaaaatgCATGCTCATGTATGTTTTAGTTTTGTATAGATACATCTTTTTGGGGAAAAATATAAATgtctcctctagccctctactGCTAATATTCCATCCTATTTTTTGGGGGAAGATTTAGGCTTTTCTCCCCCTCCACCCAGATTTCATTGTTGATAAAACACCAAGGAAAATCTGATATATTTAGAACACTTATTAAGAGGAACATACTAGGAAAAAAACACTCTTTTCAACACTCTTACAAGTTGGGGGCATAAACTAGTATTTCACTGCCTCTCAAACCTGATTCTTCCTCGCTGTCACTGTCCTCCAGCTCACTGTCCTCACTATCAGAGGGTGATCCTAACTGCTCCATTAGGATCCTTTCGCCCATATAATGTCGCTGTGTCCATTGCATGTGAATGTCAGTGGATATTTTGGCAAAAATATCCATATCCATCAAATGTCTTTCATTGAGCATGATATTGCCCTGAAAAGTAGCCTAACTGCACAACGTTGCCCTGAGGCAACAAAAAGAAAACGACATTTgttttttcatatatatatatatatatatatatatatgtgtgtgttcaaAAATCAAATATGCTTCTTTACAGGTTCCTACACAATTAGATATTTTTAATTGTCAAGTTATCTCTAGTTAAACATGCaaaataatataatgtattgtacACTTCAGTCACACCACGTGCTCAGGTTGCTCTGCTTCCTGAAAGAAGGTCCCTCCCCCAGTTGATACATCATACCAACTTCTGCACCTCATTGGATTGTTTACAAACATGTCATCACATATTATCATAATATGGGGAGGTTGAGGGGCAAAAATATTTTCTGTTGCCTAAGGGCAACGATGTGCAGTAGAGGGCTAGTTTTGGAAGCAGTATAAGAAGGGAGTGGGAGGGTGGGGGGgctgcaaaaaaaatacaaataaaagtgGTACTACAGGCTTTGCCAAGTTGCTCTTAGTCCTGAGCAAGCAGAACTTTTCCAGATGTTGTCCAGTACTGTTCTGTGAAGCAGACTCTTCCATAGGGTAGCCTGGGCTTgcgctacagtacagtacattacagtacattacaagaTCCAGACACAGGCTACTAGTCTACTGCATCCCACTGCTTCTCCAAGACAAAGCCCACATCTTAGACGCAATGAAAACaagagagaaaaaacaaacagacaaactaAGAGAAGtgttttgcttttttttttttatatatatagctGGCTAACTAACTCAAAGACTCTGAGATGTTTTTATAGCATGTCTCTAAGGGGCTTGTACTCCACCCTGATTCTCCTGGTCCTCCTGTAAGTGATCATCCGGTCTGTGTGTGCTcgctcttctcttcctcctatgCCTCTCCGTTTCTCTATCCAGCAAAGTTAAACAGAGCTGCCAATGTGAAGGAATGAAAGTTGGGTCCAAACGTGTGGAGTTTTATTTTTCAACAACGTTTGCTCCCCCAGTCTTGACTACATGAGTTAGTAGGTACTGTTGGAAACTGGACTGATGCCGTTAGAGGGTTAAGGCATATTATGGGAAAGGGTTTACTGATTCAAAGAACAACTATGGAAAAGTGTTCCAGTGGCTGTTGATGATACTGAGAGGTGCAGAGGTGACGACTGGCTGATCTACCTGCTCCTGTGGTTTTTCTACCATTCCGACTGGAAGTACCCATCGCATGCCAAAGCATGCCCAGttcttttcttctcctcctctcttttatttctttactttttGGGGGTCTGTTCGTTTTTGAGTTATGTGGAGAAAATAATGAAAGTGTTTGAAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196051 lncRNA upstream 104599 65488039 ~ 65488869 (+) True G172389
TU196050 lncRNA upstream 109032 65483075 ~ 65484436 (+) True G172388
TU196049 lncRNA upstream 110397 65482621 ~ 65483071 (+) True G172387
TU196048 lncRNA upstream 111007 65482192 ~ 65482461 (+) True G172386
TU196047 lncRNA upstream 111326 65481723 ~ 65482142 (+) True G172385
TU196177 lncRNA downstream 13180 65661840 ~ 65662637 (+) True G172495
TU196181 lncRNA downstream 19857 65668517 ~ 65668744 (+) True G172499
TU196183 lncRNA downstream 20390 65669050 ~ 65669695 (+) True G172500
TU196194 lncRNA downstream 33219 65681879 ~ 65682936 (+) True G172508
TU196195 lncRNA downstream 34702 65683362 ~ 65683572 (+) True G172509
XM_036953227.1 mRNA upstream 56686 65531126 ~ 65536782 (+) False map1lc3b
XM_036953106.1 mRNA upstream 568603 64866284 ~ 65024865 (+) False LOC110493825
XM_036953095.1 mRNA upstream 568603 64866285 ~ 65024865 (+) True LOC110493825
XM_036953047.1 mRNA upstream 834075 64666137 ~ 64759393 (+) False akap13
XM_021568559.2 mRNA downstream 143929 65792589 ~ 65801972 (+) True lcat
XM_021568592.2 mRNA downstream 163570 65812230 ~ 65821040 (+) True pla2g15
XM_021568579.2 mRNA downstream 181455 65830115 ~ 65839097 (+) False znf319b
XM_021568571.2 mRNA downstream 181459 65830119 ~ 65839097 (+) True znf319b
XM_036953375.1 mRNA downstream 203845 65852505 ~ 65865562 (+) False LOC110493986
TU196081 other upstream 56681 65531146 ~ 65536787 (+) True map1lc3b
TU193612 other upstream 1715235 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 1763148 63820461 ~ 63830320 (+) True G170131
TU192528 other upstream 2807825 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 3713044 61879770 ~ 61880424 (+) True LOC118936783
TU196344 other downstream 286936 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 613966 66262626 ~ 66266023 (+) True LOC110494096
TU197812 other downstream 1093160 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 1306864 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 1590230 67238890 ~ 67239896 (+) True LOC110494472

Expression Profile