RNA id: XM_021568459.2


Basic Information

Item Value
RNA id XM_021568459.2
length 2525
RNA type mRNA
GC content 0.51
exon number 12
gene id klhdc4
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65651079 ~ 65665571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAACCGCGCTTGTCTGTGGAAGTACATGTGAGTTTATTTAGCTGGACAATTTCCATGTGGTTCTGATTCAACAACTGATTCAAAGCTAATCTGTAGCTAGTACTGTCCTGTAAAAATGGGCAAAAAGGGTAAAAAAGAGCAAAAGAAAGTGAAAGGAGCAGAGAAGACAGCAGCCAAAATGGATAAAAAGATTTCAAAGCGGTCTAAACGAGAAGAGGAGGACCTGGCTGCGCTGATAGCTGAGTTTCAGTCCTTGGATGCAAAGAAGACAACGGTTGTGGAGACCGCCTGCCCGCCCCCCTCACCCAGGTTGAACGCCTCACTGTCAGCACACCCCGACAAGGATGAGCTGATCTTGTTTGGAGGCGAGTTCTTCAATGGCAAAAAGACGTACCTCTACAATGACCTGTTCTTCTATAACTTAAAGAAGAACACCTGGGTGAAGTCAgacatccccaaccctcctccaCGACGCTGTGCTCACCAGgcggTGGTAGTTCCCCAGGCAGGGGGGCAGCTGTGGTTGTTTGGAGGGGAGTTTGCGTCTCCTGACGGGGAGCAGTTCTACCACTATAAAGACCTCTGGGTTCTTCACCTCTCCACAAACACCTGGGAGCAGATCAAGGTTCCAGGTGCCCCCTCTGGTAGGAGTGGACATCGTATGGTCCTGAGTAAGAGGCAGTTGCTGGTGTTCGGAGGCTTCCACGAAAGTGCTAGGGATTTTATCTACTACAACGATGTACACGCCTTCAGTCTGGACTCCTTCACCTGGAGTCGCCTCTCCCCCTCCGGCACTGGCCCCTCCCCTCGCTCAGCCTGCCAGATGACCTCTACCCCCGATGGCTCCGGGGTCATCATCTACGGAGGATACTccaaagtgAAAGCTAAGAAAGATGTGGAAAAGGGAACCATCCACTCTGACATGTTTCTCCTCAAGAGAGATGGCAAAGAAGAACAAGAGAAGTGGTTGTGGTCCCGGGTGAGTCCCTCAGGCTCCAAGCCACCTGCCCGGTCGGGCTTCTCCCTGGCTGTGGGGCCCACGGGCCGGGCGCTGCTCTTCGGAGGGGTGTGTGACGAGGAGGAAGATGAAACTCTGGAGGGGGACTTCTACAACGACCTTTACCTGTATGACATCAACAAGCACCGCTGGTTCCCTGCTCAGCTCAAGGGCTGTAAGTCGGAGAAGAAGAAGCGTCGAAGGgggaagaagggaggggagacaggggaggggtCAGGGGAGGGTCAGGAGGAGGAAGGAGCAGCAGCACAGGGACCTGTGGAGGTCATCAAGGAGATCGTCACTGAAGACGGAACAGTCATGACCATCAAGGAAATAATCCCCGGGACACaggtggaggaagagagtgaggaagaggaggaaggtgaggaaGGTGCCTCGGCCATACTTGTCGAGCCCTGTGCTCGCTCCAGTGCCATGGCAACAGTGAAATATGGGAAGCTGTATTTGTACGGGGGCATGTTTGAGGTGGGTGACCGCCAGTTCACCCTCAACGACCTGTACTGTCTGGACCTCCACAAGATGGACCAGTGGGAGGTGCTGGTCGAGATGGACCCCAAGACCCAAGAGTGGCTGGATGACTGGTCTGACTcagaggatgatgaggagggagatgaagaggaggcTAAAGGAGGTGATGACGAAGAGGAGGAATCTGAAGAAGAAAGTGACGAACAGGATGAGGAGGATCACCCCCCAGTGCAGCCAGGTGAGGCGCTGGAAGACTTCCAGAGCCGTACAGAGCAATACTGGGTAGGCCAGGCCCGGGCCAACATGGGCCCAGAGGCTAAGGACACGAAGGTGCAGAAAGTGGGCATAGCCATGGCCAAGGTGTTCTATGAAGACCAGCAGTGAGCCAGGGTGTATGTGTATCTGCcttctttgtttgtttgtttgtgtgtgtgtgtgtgtgtgtgagacaggtgGAGAGTGATAGTTTGTCATAGGGAAAAATGAGGGTACTCATCAGTGTttcaactccagtcctcaagtaccccccccctccccccaacagcacacatttgtATTGTAGCcacggacaagcacacctgattcaacttatcaactaatcatcaagacctcaatgagttgaatcaggttagtttgtttggggctacaacaaaaatgtacgcggttgggggtactcaaggactggagttgggaaccactgatgaGTATCCTCATTCTTCCCAATGGCACATTATTAGAGTTGGAAAACACTTCTTTAAACTGAAGAGGCCAATTAAATAATTTCTCTGCTTAGTGAACATTTTCTGCCCTCATAACCATCCATGCCTTTGTACAGTAGGCCTAACTGTGCAAGAAAATATGCTGCTGTTTTGGCAGTTGGACTACACTGCAGTATGTATACTGTATCGTATTTGGAATTAGTTTCTAGTTTCATATCTTCAAGAAGATGGTCAGAAAATCCTTGTCATTGCTCACCCCCTTTGATTATTGTTTTCTAAACCAATTTGTCATTAAACATCCAACCATAATACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196972 lncRNA downstream 30707 65608539 ~ 65620372 (-) True G173201
TU197012 lncRNA downstream 75764 65574375 ~ 65575315 (-) True G173239
TU196941 lncRNA downstream 111179 65536994 ~ 65539900 (-) True zcchc14
TU196930 lncRNA downstream 119647 65530911 ~ 65531432 (-) False zcchc14
TU196987 lncRNA downstream 125951 65524422 ~ 65525128 (-) True G173214
TU197090 lncRNA upstream 28213 65693784 ~ 65694028 (-) True G173309
TU197107 lncRNA upstream 56550 65722121 ~ 65722321 (-) True G173326
TU197109 lncRNA upstream 58388 65723959 ~ 65724172 (-) True G173328
TU197141 lncRNA upstream 134321 65799892 ~ 65803350 (-) True G173349
TU197190 lncRNA upstream 209643 65875214 ~ 65877945 (-) True G173393
XM_021568425.2 mRNA downstream 80054 65535279 ~ 65571025 (-) False zcchc14
XM_021568376.2 mRNA downstream 142013 65487387 ~ 65509066 (-) False det1
XM_021568384.2 mRNA downstream 142013 65487387 ~ 65509066 (-) False det1
XM_021568395.2 mRNA downstream 142013 65487387 ~ 65509066 (-) False det1
XM_021568404.2 mRNA downstream 142013 65487387 ~ 65509066 (-) False det1
XM_021568487.2 mRNA upstream 19690 65685261 ~ 65715957 (-) True slc7a5
XM_021568509.2 mRNA upstream 65160 65730731 ~ 65741201 (-) False LOC110493906
XM_021568500.2 mRNA upstream 65160 65730731 ~ 65752045 (-) True LOC110493906
XM_021568519.2 mRNA upstream 97150 65762721 ~ 65778516 (-) True LOC110493917
XM_021568538.2 mRNA upstream 116759 65782330 ~ 65789632 (-) False ccdc135
TU196928 other downstream 114298 65534471 ~ 65536781 (-) False zcchc14
TU196931 other downstream 114298 65534471 ~ 65536781 (-) False zcchc14
TU196932 other downstream 114298 65534471 ~ 65536781 (-) False zcchc14
TU196934 other downstream 114298 65534471 ~ 65536781 (-) False zcchc14
TU196935 other downstream 114298 65534471 ~ 65536781 (-) False zcchc14
TU197163 other upstream 167770 65833341 ~ 65839074 (-) False G173370
TU197164 other upstream 167770 65833341 ~ 65839074 (-) True G173370
TU197229 other upstream 256279 65921850 ~ 65922229 (-) True G173431
TU197458 other upstream 612250 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 669841 66335412 ~ 66338386 (-) True G173675

Expression Profile