RNA id: XM_021568487.2


Basic Information

Item Value
RNA id XM_021568487.2
length 4711
RNA type mRNA
GC content 0.45
exon number 10
gene id slc7a5
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65685261 ~ 65715957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCAAAAAAAGAAGGAGACTGGCCCATATGACAATTTCAAATGTTCGTCGTCGCGTCCTCAAAGACAATTTgaatgagaaagccagaggtcccgccCCTCTGACCTTTTCCAAtgggagggaggtaaggagagaggacgCAACAGGGCACTTGCGATTCTCCCCTTGATGCATTCTACTCGAGTCCTTTATACACAGAGTTGCGTTGACACAGCAAGCACGTTTTTCCGTGTCAGCATCGTGTATTTGTGCTACAGGAGCGACTCAGACAGAATCATAGACATTGAATAGAAAAAACAACGCAAGGAGAGACACAGACAGCACGCTAAAAGCTGTGTCCCCACAGTATCGAGCAATGTCTAGTTTAAAGAAAAGAAATTCGAATTCGTCAGTTGACCGGGATGTGGAAGACAAGGAGGTTACGGAGAAGATGCTCTCTCCGTCCGGAGGGGAGAATGGAAACTCGAGCCGAACGGGAGGCGCACCGGGAAGCCCGGACAAGGTATCTGTACCCGGCGAAGATAAGGTTGTCCTAGAGAGAACCATTACCCTGGTGAATGGCGTAGCTATCATTGTGGGTACCATTATCGGCTCGGGTATATTTGTGACCCCGACTGGAGTGGTAAAGGAAGCCGGGTCAGTCGGACTGTCCCTTATTGTTTGGGCAGTGTGTGGAGTGTTCTCAACCATAGGTGCCCTGTGCTATGCTGAGCTGGGCACCACTATTTCCAAATCAGGTGGAGACTATGCTTACATCCTTGAAGTGTATGGTTCCCTGCCGGCTTTCCTGAAATTGTGGATCGAGTTGCTCATCATCCGGCCATCATCGCAGTACATTGTCGCGTACGTCTTCGCTACCTACCTTCTCAAGCCCATTTTCCCTGACTGCCCAGTGCCCGAGAATGGGGCGAAGCTGATAGCCTGTCTTTGCATCTTGCTGTTGACTGCTATAAACTGTTACAGTGTGAAGGCAGCCACGCGGGTCCAGGATGCCTTTGCTGCTGCCAAGCTCCTTGCCTTGGGCCTCATCATTATTGTGGGCTTTGTGGAGATTGGGAAAGGTGACACAGTCAACCTCCTACCAGAAAATTCTTTCAAGAATTCAAATTACGATTTTGGGAACATTGGTCTGGCCCTGTACAGTGGTCTGTTTGCCTATGGGGGCTGGAATTACTTGAACTTTGTCACAGAAGAAATGATTGAACCTTACAAGAACCTGCCGCGTGCAATCATCATCTCCCTTCCCATCGTCACTGTGGTGTACGTACTAACTAACCTGGCCTACTTCACTACTCTGAGCCCAGATGAGATGCTCAGCTCTGAGGCAGTGGCTGTGgactTTGGAAACTACCACCTGGGTCCCATGGCTTGGATCATCCCGGTGTTTGTGGGACTGTCCTGTTTCGGCTCCGTCAATGGCTCTCTCTTTACATcatccagGTTGTTCTTTGTGGGCTCAAGAGAGGGCCACCTCCCCAGTCTGCTGTCCATGATCCACCCCAACCTGCTGACTCCTCTGCCGTCACTCATCTTCACATGCCTGATGACGCTGCTGTACGCCTTCTCCAACGACATCTTCTCCGTCATCAACTTCTTCAGTTTCTTCAACTGGCTCTGTATTGCCATGGCGATCATTGGCATGATGTGGCTGCGCTACAAGAAACCTGAGCTGGAACGACCAATCAAGGTGAATATCCTGCTGCCTATCAGCTTCGTCCTGGCTTGTATGTTCCTTATCGTGGTGTCCATCTGGAAAACACCTGTGGAGTGTGCCATCGGCTTTGGCATCATTGCCACGGGAGTGCCAGTCTACTTTATTGGCGTTTGGTGGCAAAACAAGCCCAAATGGCTCCTTCAATTAATCTtctcttcCACGGCGCTATGCCAGAAGATGATGGAGGTGGTACCACAGGAGTCCTAAAGATGAGATAAATCGATGAAGCCCCTCGTCACGGGAAACCCAGTAACTGCTAATTTACCCTACCCCCCCTGCACCCAGTGTACACCCTAACTCAGCCCCTATCGATGTGTTCTTCAAGCACACTCCAATCATTCCCCCTGATCTGCTAGTGCTGTAGTGAAGGAGAGCCATGCTGCAGACTGGTTTACATGTCAGAGCCCCTCCTTCATTCCTCCGCACCAGGCAGGGGCACGGCCACCCCCACGCCACTCATAGGCCGTTTGATAAGTGCTGGGATATATTCAGACAGGTTTTCACTGCATAGTATCAGTTTAAAAGGGCCAGTACAGTCAAAAACATGGTGatcctgtgttttatatttccATACTACAAGGTTGTGAAAATGATCATAATGCCCTTTTCGTGAAGAGCTATTTGAAAAGACTACCTGAAATGTCTGCTTGTTTTGGTGGGATGAAGCTTTGGCCTGctagtgacatcaccaggcggtaatttagttaatagaccaataagaaagagagttccaaaaaTCTCTgccaacagctagttttcagttttcccctccccactcagaacaTTCCCAGTCAGACCTAGCAAaagtcttgcttgagaaattgttctttgctaagaatatatatatatattttttaccattttcattgaaaacaatcacagtagggtacttaattgttacccagaaatgatttgctaTCGAGATAAAAactgctgcattggaccttttaacATTTTTGTTGATTTGTATTTTTGAATATCTTTGTACTCTTATCCCACCATGACCCACAAGTGTTGTTTTTATAAGAAagatgttacttttatttttcatatttggGTTGCAGAGAGATGTCCTCTCGTTCAAACTATTATTTCACTGAGGGTTTAGCATCCATGTGTTCATGTAATTACAATCTGTGCTTTCATGGAGTTGTGATGGACACTTGTGGCCTGGCTTTTTGCCAATTCCTTGTAGGCTAAAGCTAGATCTTTTGTTCAGATTTTCATGGTAGACTCACTGTTTCTCAGTAGTTCTGCCATTACCCAGTCAGGGAGTCAACTGCTTCCCAGTAGGGTATCATCTCTGTGTTGCCATGGCTTCTATTTAAATTTCAGCACCTTACAGGCTGTATAATGCAGCCATTATGTGTTGCCATCTGGGTGTGTATCTAAATatctgtgtatatttgtgtttTCTGTATGCTTTTATGTTTTCAGCTTTTGGGTGGGTATTTGTAAAGAATAGCCAAACATGAAGGACCCACAAATAACATTTGCTTAAACTAGTGCCTCTGATGAAGCCAAAGGCTATTCAGTTCCCCGACTACAGACACAGTACAACTCATCTGACCCCAGAGAAGCTGAAGACAGAGGTAGACAGGTAAATGCACGTGTAACAGCGATTGGAGGAGTGTCAGTGGTATACTTCTTATGTAATAGCACCCCTCCCCTCGGCATCTATGGCAGACCAGACTGGTTCACTGCGCCTAGACTGTACACGTTGGAAATCCCAGCTTTGGCAGttcttttttaaattctttgTAGATATGAATTTCTACTTgaattcatttatttttatagGTAGATGCAGTGGAGCTTTTTTTTAATGCTGTCAATTAACAATTTTGTAAATCCAGGTAATTCGTAAATTCCTATGAGATTTCTGGTTCACAATTATACCAATGCAGGGGACATTTTAATTATAGTTATTATTACAACTATTTCTCATATACAAGTTGCTTGTGTCCTGTGAAGGTCACAACGTCATGGTTTTTTAATACTGGCATTAACACCAGCGTATGAGCATAATAGTTGCCTGCTTGAGGACTTCATTTGTTCTTAGATCACGGTTATCTTGTGGGTATCATCTGATGCACATTGCTACTTACTACTGTTAAGTTAGTGTTTTTATAACAGAGCAGGTCGTAACAAAGGCCCCCGATAGGAGCACTGACGTCACAGCCACTGTTTTTACCTACCACGACAAGGGGGGCTAATAACCTTAGATATTGGGTTAGAATGGGCCATTGTGCGTGAGTGTTTGAGGTCTATGTGTCTAAGAATAGGTTCATAGCTGTGAATATTCTTTCAGTGTTTTAGTGTTTCTGTGCTTATGTGTGTCTTGGTATCCTACATTAGAAAAGGTATATTGTATGTTGTCACTACTGTCAGCGCACAACTTCATAGAAGGATTTCATTATTTTAGGGTGATAATGATATTTGTGCTGTAAAAGGTTTGATGAGGTATGGACCATGGTAGTGGAAGATGGGTAGTTGCCCAGTCAAAAGGGGGAGGCAGGCAGGGCATTCAGAGTAGAGGTTAAAACCACAGTCTTTGGATACAGATGCCTCAGGGGGTTGGGAAGGTTGACAAGATTAATTCATTGTTATTCTTATTATTTTTTGCTGAAAGGacttgttgtgtactgtattaacTGAACTCATCCTCCAGAAGCTTGTCCAGACCCGTGTTCCTCCACGCTGTATCGTTACCGTGGTAAAGCGTATGATGTGTTGTGCTATAGACCACCCGGTTGCTATGGTAACGTATAGTTCATGAGTCTGGTCTCCCATCAGTTTCTCAGAGGATCTGTCATTGTTTTTAGAACAGCTGCATAGCGAGCTAACACTTCAGCCATCTGAAGTCATTTAAATAGTACCataggtttatttatttattgtaggAACTGTCAGCGTTCTCATTTTTTGGGGGTCCTTATTTTTTTACAGGGCATTTGTGAAAGTGCTTTATGAATAAATCTTACATTTTATTCCATA

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13780 SLC7A5, LAT1; solute carrier family 7 (L-type amino acid transporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197078 lncRNA downstream 22624 65661852 ~ 65662637 (-) True G173297
TU197074 lncRNA downstream 26957 65654632 ~ 65658304 (-) True G173293
TU196972 lncRNA downstream 64889 65608539 ~ 65620372 (-) True G173201
TU197012 lncRNA downstream 109946 65574375 ~ 65575315 (-) True G173239
TU196941 lncRNA downstream 145361 65536994 ~ 65539900 (-) True zcchc14
TU197107 lncRNA upstream 6164 65722121 ~ 65722321 (-) True G173326
TU197109 lncRNA upstream 8002 65723959 ~ 65724172 (-) True G173328
TU197141 lncRNA upstream 83935 65799892 ~ 65803350 (-) True G173349
TU197190 lncRNA upstream 159257 65875214 ~ 65877945 (-) True G173393
TU197199 lncRNA upstream 166480 65882437 ~ 65883420 (-) True G173401
XM_021568459.2 mRNA downstream 19690 65651079 ~ 65665571 (-) True klhdc4
XM_021568425.2 mRNA downstream 114236 65535279 ~ 65571025 (-) False zcchc14
XM_021568376.2 mRNA downstream 176195 65487387 ~ 65509066 (-) False det1
XM_021568509.2 mRNA upstream 14774 65730731 ~ 65741201 (-) False LOC110493906
XM_021568500.2 mRNA upstream 14774 65730731 ~ 65752045 (-) True LOC110493906
XM_021568519.2 mRNA upstream 46764 65762721 ~ 65778516 (-) True LOC110493917
XM_021568538.2 mRNA upstream 66373 65782330 ~ 65789632 (-) False ccdc135
XM_021568547.2 mRNA upstream 66373 65782330 ~ 65792797 (-) False ccdc135
TU196935 other downstream 148480 65534471 ~ 65536781 (-) False zcchc14
TU197163 other upstream 117384 65833341 ~ 65839074 (-) False G173370
TU197164 other upstream 117384 65833341 ~ 65839074 (-) True G173370
TU197229 other upstream 205893 65921850 ~ 65922229 (-) True G173431
TU197458 other upstream 561864 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 619455 66335412 ~ 66338386 (-) True G173675

Expression Profile