RNA id: XM_021568500.2


Basic Information

Item Value
RNA id XM_021568500.2
length 2502
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110493906
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65730731 ~ 65752045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAAACATACCCGAACGCAGCCATGTTgtttgcatgtgacaaatacaatttgattaggtGTATGGAAGAAGTCGGAGCTCAAGGGTGTAAACGAGTTTCCCTCAAGTAATTACGAGTTGGAGAGGCGTTCAAGTGGATTTTCCAGTCATATGCTCGTATTTACAAGATGCTATGAACGCAGCATCGTCTCGCGCATGTGGATTGAAACATCCCTCAGACGATAAAGCTGATAGGTCGGGATGGAAATTTTGCGACCCCCCACTCAGCTAACTCTTCGTAATGACATTGCTTTGTAAACACATTTACAATCTGTTATTTTCGTTGATGCAGCGCGTGAAATATCCGTAGGAAGCTAAATTAGATGGGTGCGGTGTTCAAGTAAGAGCACGCATCAACAGGACTAGTGAAAAGCTGTAAAACCGGATGGAATTTACTGTCAGTTCGTGAATGTTTTAATCGTGTGAAAGCCTGCCCATTTCGTTGCTACCAGTCAAGCGAGAGGTAGCCGACAATGTGGAAGACGAGGGGCCCTAAAAAGCAAATCCCGTTAGGTGGAAACAGCTATGAAACCAACCCGTAACACCTGGGGACAAGATGAGCAGTTGACTTGACGTTTTGCCTTACCCGAAACGATAAATAACAGTTAACTTTGACTCTCGCAACCCTCGAGAAGCGTATTCGAAGAATCCGAGATAATGGTGGCTCTCTCATCGGTTTTAACGCCCCTTGCTCGGCAGCTGCACAGACATCTCATCAAGCAAACTAAAGGGCAACGTTTGATACCTGTGAGAAGATGCAACCTCACCGCATGTTCAAGCAAATATGTGCTTTCTGCCTTGCATCCAATGTGGCAGGGACCACTCGTTGCTCCAGGGGGTAACAGACAATCTCCTATCGATATTCGGGTGCGTAAGAGCGTTTTTGATCCGCACCTTAAGCCGCTGACCCCGGATTACGACCCCGGGACGTGCTCACAGATATGGAACAACGGGTACTCATTCCTGGTTGAGTACGACGACACCACCGACAAATCCATACTTAAAGGGGGTCCTCTGGAAGATAACTTCCGGCTGTGTCAGTTCCACTTCCATTGGGGGGAGAGCAACGCGTGGGGTTCCGAGCATACCGTGGACCGCCGCCTCTTCCCTGCTGAGCTCCACATGGTCCACTGGAACTCTAATAAGTACAGGCGGTTTGAGGAAGCTGTGATGGAGGAGAATGGACTGGCTGTTATCGGAGTCTTCCTCAAGATAGGGAAGAGACACGAGGGACTGCAGAAACTAGTGGATGCCCTACCTGCTGTCAGACACAAGGACAGTGTTGTTGAGTTCACTAGGTTTGACCCAGCCTGCCTACTGCCTGCTAACATTGACGATTACTGGACGTATGCAGGGTCACTTACCACTCCTCCTCTGACTGAGGCAGTGACCTGGATTATCATGAAGCAGCACATCGAAGTCAGCCATGACCAGCTGGCAGTGTTCCGGAGCCTTCTCTTCACCTCGGCAGAGGAGGAGGTGCAGAAGAGCATGGTCAACAACTTCCGCGTGCAGCAGCCCCTGAGGGGCCGCACTGTGCGGTCCTCGTTCACCCCCTTCCTGCAGCAGGAGCCACCTGCAAAAGGTCCACACACAGGCCACTGACCGGAGCCTAGGCCTGGGCAGGCAATAAGGACCTGGTTCCAGGACCCATAACCCCACACCAGACCTAGTCGGCACCTTTGAAGACAAAACAGAGAATGGAGCCAGGGTGTGGATATTTAGATATGTTAGGAAACATGGTTTGAGTTTTATCTCAACCTGATTCAAACAGACCCTCATCTGTTTATTATAGTTGGCCACTGGATATAAAAATGGGATAAGAGTTGTCTCCCAAAAGGCTGCAGGTTCCCCATTGTGTGGGAGAGTTTGAGAACCTGCTTTATGAACTGTGTATAACAAATGGGGGAATTAAATGAACATTCGATTAGAGTGAATATTTTCGTGACCACATAGCTATCAACTCTGCATTCAGAGCATGAGAATCCACCcactgaagctaggacagcagagtccgtTCCCATCTTCCGAAAACAACTGAAACCCTACCTCGTCAAAGAGCATCTTAAAGACATCTCAGTTTTATCCGcctaaatgcggaagacacatttcaattgaaTAGATTTAGTTGgacatctgactaggtatcccccctttccctttaaaAGGCGTACACTTGTCTTTTCCTATTAGCACTGAATCTGCTCTATAACTTCTGTATTGAGGAACAATGTACTGTGACtgtgatgtggttgtctcacctagctatcttcagTTTAATGCACTTACTGTAAATCGCTTTTGATAAAGGTGTctactaaattactaaaatgtaaatgtaaaatgtcatTCTTATGAAGGCCTGTGGACCTCTTCTTCTGACCATACACTTCAAGATGAAGTGGTGGTTAGAAAAGGTCTAATTAAAGATCATTTCTTCTTCTCTTGGTTTTGTTCGTTGTT

Function

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197109 lncRNA downstream 6559 65723959 ~ 65724172 (-) True G173328
TU197107 lncRNA downstream 8410 65722121 ~ 65722321 (-) True G173326
TU197090 lncRNA downstream 36703 65693784 ~ 65694028 (-) True G173309
TU197078 lncRNA downstream 68094 65661852 ~ 65662637 (-) True G173297
TU197074 lncRNA downstream 72427 65654632 ~ 65658304 (-) True G173293
TU197141 lncRNA upstream 47847 65799892 ~ 65803350 (-) True G173349
TU197190 lncRNA upstream 123169 65875214 ~ 65877945 (-) True G173393
TU197199 lncRNA upstream 130392 65882437 ~ 65883420 (-) True G173401
TU197226 lncRNA upstream 163018 65915063 ~ 65917401 (-) True G173428
TU197227 lncRNA upstream 167953 65919998 ~ 65920259 (-) True G173429
XM_021568487.2 mRNA downstream 14774 65685261 ~ 65715957 (-) True slc7a5
XM_021568459.2 mRNA downstream 65160 65651079 ~ 65665571 (-) True klhdc4
XM_021568425.2 mRNA downstream 159706 65535279 ~ 65571025 (-) False zcchc14
XM_021568395.2 mRNA downstream 221665 65487387 ~ 65509066 (-) False det1
XM_021568519.2 mRNA upstream 10676 65762721 ~ 65778516 (-) True LOC110493917
XM_021568538.2 mRNA upstream 30285 65782330 ~ 65789632 (-) False ccdc135
XM_021568547.2 mRNA upstream 30285 65782330 ~ 65792797 (-) False ccdc135
XM_021568528.2 mRNA upstream 30286 65782331 ~ 65789632 (-) True ccdc135
XM_021568620.2 mRNA upstream 69612 65821657 ~ 65829728 (-) False usb1
TU196935 other downstream 193950 65534471 ~ 65536781 (-) False zcchc14
TU197163 other upstream 81296 65833341 ~ 65839074 (-) False G173370
TU197164 other upstream 81296 65833341 ~ 65839074 (-) True G173370
TU197229 other upstream 169805 65921850 ~ 65922229 (-) True G173431
TU197458 other upstream 525776 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 583367 66335412 ~ 66338386 (-) True G173675

Expression Profile