RNA id: XM_021568519.2


Basic Information

Item Value
RNA id XM_021568519.2
length 3090
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110493917
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65762721 ~ 65778516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccgtcaTATAAAATCCACAAAAGAAGAAGCTACTATCTCGTCCTCTACAGTTTATATCTTGAAGCGGTCAACAATGGTAACGTTACAACTAGTGGGGTCTCTCCGAAAAGAGCTCGCTGACTCCTTATCCACTTGCCGGGTGCTGGTGGTCGGAGCTGGAGGAATTGGCTGTGAGCTCTTGAAAAATGTTGTTCTCACCGGTTTCAAAAATATAGAAGTGATTGATCTGGACATTATTGATGTGAGCAACCTGAACAGACAGTTCCTGTTCCAGAAGAAACATGTGGGAAAGTCCAAGGCTCAGGTGGCCAAAGAGACTGTGCTGCAATTCTGTCCTACTGCCAATATCACGGCCTACCATGACAGCATCATGAATCCAGATTACAATGTGGAATTCTTCAGGAACTTCATGCTTGTAATGAATGCCTTGGACAATCGAGTGGCTCGTAACCATGTGAACAGGATGTGTCTTGCAGCTGACATTCCCCTTATTGAGAGTGGCACAGCTGGCTACCTTGGGCAGGTGACCGTTATTAAGAAGGGTCTTACTGAGTGCTATGAGTGCCAGCCCAAACCCACACAGAAAACATTCCCTGGCTGCACCATTCGCAACACCCCATCTGAGCCCATACATTGCATTGTGTGGGCCAAGTACCTTTTCAACCAGCTTTTTGGAGAGGAAGATGCAGATCAAGAGGTGTCCCCTGACACAGCTGACCCAGAGCTTTcatGGAACCCTGCAGACACTGAAGCCCGAGCCACAGCATCTGACCAGGATGGAGACATCAAACGTGTGTCCACTAAGGACTGGGCACGTTCCACTGGCTACGACCCAGTCAAACTCTTCAATAAGCTTTTTAAAGATGACATCCAGTACCTCCTGACCATGGACAAGCTGTGGAAGAAGAGGAAAGCCCCACTGCCTCTGGATTGGCTTGAGCATCAGAAACTTACGTGTCCCCAGGGGGTGACTGGGACGGGATTGAAGGACCAGCAGGTGTTGGGTGTGGCAGGCTACTGCCAGCTCTTCTCCCGCAGTGTGGAAACCCTGCACTTCATGCTGGTTGACAAAGGGGATGGAGCAGAGCTTGTGTGGGACAAGGATGACCCTCCAGCGATGGACTTTGTGACAGCAGCCGCCAACCTGCGCATGTATATTTTCAGCATGAATATGAAGAGCCGTTTTGACATCAAGTCCATGGCAGGGAACATCATCCCAGCGATTGCCACAACCAATGCAGTCATTGCTGGCCTCATAGTGCTGGAGGCACTGAAGATTCTTTCGGGAGATGTGAAGCAGTGTCGCACGATCTTCCTGAACAAGCAGCCCAACCCCAGGAAAAAGTTGCTGGTTCCGTGTGCTTTGGACCCACCCAGTGCCAACTGTTATGTGTGCGCCAGCAAGCCAGAAGTCACAGTCAAACTGAATGTGCACAAAACTCTTGTGCTGGCCCTACAAGACAAGATATTAAAGGAGAAGTTTGGGATGGTGGCGCCAGATGTGCAGATCGAGGATGGGAAAGGGACAATCCTTATCTCCTCTGAGGAGGGTGAAACCGAAGCAAACAACTGCAAGTTCCTGTCTGACTTTGCGATTCGAAATGGCAGCCGTCTGCAAGTGGATGACTTTCTGCAGGATTACACACTCCTGGTTAATGTGATTCACTGTGAAAACTTGGAGAAGGATGTGGAATTTGAGGTGGTGGGTGATGCACCTGACAAGGCCCCAACCAGGTCACAAGAAGAGGGAAAGAACGTTGCCAATGGCAACAAAGATTCTTCAGAACCGTCCACCTCTTCCGAAGCTCCTGCTGAACAGAATGACATTCTGCTAGTTGATTCAGACGAGGAGGCGCCGTCCTCCAGCACTATGGCTGTCAGCATGGAGTCAGGAGGCCACAAGAGGAAGCTCCATGATGCTGAGACAGGCGAGGCCTCAGCTAAGCGCCAACACCTGAGTCAACCCTCAGCTGATGATGATAATGACATCATTGCGCTGGACTAGCATGTCTctcaacccccaccccccccctgtTAGAAGAAGGGAACTATTTTCATGCGCCATTCCTCTTACCAAACATTTGTAAATAATTATGTACAAAACTTACGTTTTCTGGTTATTTGGGGTCAACAGAGTACTGTTTACAGTGGACATTTTGATACATTGCATCTATTTGTGATAAAATATTTaagatttttttaaaataataatgtatttgTTTTGTCACAAGTCGGGTGTGTTATTTTGGGGAGATTGAAAGAAACATTTTAAAAGGTGCTACAGCTAGAATTTCTCCCCTATGTGGAAGCAGGTGAATTGCAACTGCAATAGGCATTCAAAGCAAATCTCCCCCTCCCATTCATCCCATTTCCCCGTAGAATTAGTAACgtgctttttatttttttcacctttatttaacaaggtaggctagttgaggacaagttctcatttacaactgcaacctggccaagataaagcaaagcagtttgacacctACAACAACAGTTACAAATGGAATCAACAAAcatacacagtgtgtgcaaataagggaggtaaggcaataaataggccatgttggcaaagtaattacaatatagcaattaaacactggagtgatagatgtgcaagtagagatactggggtacaaaggagcaagataaataaatacggTTTGGCGATGAGGTAGTTggctgggctatttacaggtgcagtGAGCTGGTaagagatatgagtctccagcttcatctttttttttttcttctttctttcagttctattacaatatatatatttttggatgGTACAATGCTTCCCAACACTATTCTGTTttctcacataaactgaaattgagCGAACCATGTAGAATATTTGCAAATAGGAAAAGTGATTTCTACATTGGCCAATTGACCCATCCTAGATAACACAGCCAAAGTCAAATTAGCTTTCCCATTCTGACAACAGATACTGCTCTGGTGGGAGAAATCAATAGGCGAATATCACtgccaatcacaacactggcaAGTAAGTAATATtgtgaaacactatcattccactattactgcagatagttagtcggaagtttacata

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197109 lncRNA downstream 38549 65723959 ~ 65724172 (-) True G173328
TU197107 lncRNA downstream 40400 65722121 ~ 65722321 (-) True G173326
TU197090 lncRNA downstream 68693 65693784 ~ 65694028 (-) True G173309
TU197078 lncRNA downstream 100084 65661852 ~ 65662637 (-) True G173297
TU197074 lncRNA downstream 104417 65654632 ~ 65658304 (-) True G173293
TU197141 lncRNA upstream 21376 65799892 ~ 65803350 (-) True G173349
TU197190 lncRNA upstream 96698 65875214 ~ 65877945 (-) True G173393
TU197199 lncRNA upstream 103921 65882437 ~ 65883420 (-) True G173401
TU197226 lncRNA upstream 136547 65915063 ~ 65917401 (-) True G173428
TU197227 lncRNA upstream 141482 65919998 ~ 65920259 (-) True G173429
XM_021568500.2 mRNA downstream 10676 65730731 ~ 65752045 (-) True LOC110493906
XM_021568509.2 mRNA downstream 21520 65730731 ~ 65741201 (-) False LOC110493906
XM_021568487.2 mRNA downstream 46764 65685261 ~ 65715957 (-) True slc7a5
XM_021568459.2 mRNA downstream 97150 65651079 ~ 65665571 (-) True klhdc4
XM_021568425.2 mRNA downstream 191696 65535279 ~ 65571025 (-) False zcchc14
XM_021568538.2 mRNA upstream 3814 65782330 ~ 65789632 (-) False ccdc135
XM_021568547.2 mRNA upstream 3814 65782330 ~ 65792797 (-) False ccdc135
XM_021568528.2 mRNA upstream 3815 65782331 ~ 65789632 (-) True ccdc135
XM_021568620.2 mRNA upstream 43141 65821657 ~ 65829728 (-) False usb1
XM_021568604.2 mRNA upstream 43141 65821657 ~ 65829729 (-) False usb1
TU196935 other downstream 225940 65534471 ~ 65536781 (-) False zcchc14
TU197163 other upstream 54825 65833341 ~ 65839074 (-) False G173370
TU197164 other upstream 54825 65833341 ~ 65839074 (-) True G173370
TU197229 other upstream 143334 65921850 ~ 65922229 (-) True G173431
TU197458 other upstream 499305 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 556896 66335412 ~ 66338386 (-) True G173675

Expression Profile