RNA id: XM_021568559.2


Basic Information

Item Value
RNA id XM_021568559.2
length 2131
RNA type mRNA
GC content 0.44
exon number 6
gene id lcat
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65792589 ~ 65801972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTTTACTACACGGTAGAAGCACACATCTGCTCTTATAGAAGGTCAGATGCGCATCATGTTGATGTTGTTTAGAACGTTACCTGATTTGAGATGCACTTTGAAAGTGCGGTCCAACGATGGTCGAGTAACTGACCTCACATTTTCCCTCTGATTTCGCGCCCCACCTCTTTCACACACAGCATTAATAGGCCAGTTCTCCTcctcctgacctagtgagagacaAGACAACACTGTCAAGATTTGGACAGAATGGGATATGCGCACTGCTGTACCGTGCTCCTTATAGTATTCATTGCGCTACAGCAATCTGCTGGATTTTGGCTCTTCGATGTGGTATTCCCACCAAGTGCCAAACCGCAAAACAAAGTGGCCAACAATAGCACTCCGCCGGTTCTTATAGTACCTGGGAACCTAGGAAACCAGCTTGAGGCCAAGATTGACAAGCCAAGCCTTGTGCATTGGATGTGCTACAAAAAGACAGATGACTTTTTCACACTTTGGATTGACCTGAATATGTTCATGCCAATTGGGCTTGACTGTTGGATCGATAATATAAGAATTGTATACAATAGGACAACTCGCAAGACCTCCAATTCTGCAGGGGTGACGGTGAGAGTGCCTGGTTTTGGACAGACCTATTCTGTTGAGTTCTTGGACACAAACAAGTTGTCAGGATATTTTCACACTATGGTTACACATTTGGTCAACATGGGATATGTCCGTAATGAGACTGTCCGAGCAGCACCATACGACTGGAGGGTAGCTCCAAACGAGCAGGAGGAATACTTTGCACGACTGAAGAAGCTGATTGAGGATATGTACGAGCAGTATCAACAACCACTTTACCTCTTGGGACACAGCATGGGAAGCAATTATGTCCTCTACTTCTTATATCAGCAGACCCAGACTTGGAAAGACCAATACATCAAAGGCTTCATTTCACTTGGAGCACCCTGGGGTGGGGCAGTCAAGCCTATTCGAGTGCTAGCATCAGGTGAAAATGATGGCATCCCAATGGTATCCAACATCAAGATCCGGGAGGAGCAACGCATGACCACAACAAACCCCTGGATGCTTCCATTTGAAGAGGCATGGCCTGCAGACCATGTCTTCATCTCCACACCCTCATTCAACTATACCCACCAGGACTACCAGCGCTTCTTCAAAGACATTGACTTTGAGGATGGCTGGTTCATGTGGGAAGACACCAGAAACCTGACAGCTGGTCTGCCCCCTCCTGGTGTTGAGGTATACTGCTTCTATGGTGTGGGGCTGCCCACACCGGTTACCTATATTTATGACGACCAGTTCCCAAATGTAGACCCTATAGACTATGTGTATGCTGATGGGGATGATACAGTGGGCAGTCTTAGCATGAGTTTATGTAAGCGTTGGATAGGAAAGCAAGCACAGCCTGTCTATGTCAAGGAGTTCAGGGCCATGCCCCACTTGGAAATAGTATTCAATAGCAAGGTTCTCAACGTGGTCCAGAGTATCCTGGAAGGAAGATATGGGGAAGAGGAttctacattccatgagactgaTGAACGTCCCATTGGCTCTGCAGTCATGCAAGATCAAGTCCAGCCGGACAAGGCTCCCAAATCTACACTGTAAGCTTTTGGGGAGAAAATAATTCACTCTCCCAATGTACATACAATTACTGATGTAGTAGCTACTGAGTTGGActtacacactgagtgtacaaaacattaagaacacctgctcttttcatgacgtAGACTGAACAGGGGaacccaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttcaatcagtgtagatgaaggtgagggttaattaaagaaggatttttaagccttgagacatggattgtgtatgtgtgcaactcaatattaggtgttcctaatgtttggtatactcagtgtatatgtacaCACATCCTAACTAGTATTACTAATGAGATGTGATATAGTATGCATATGCCTCTTGTTTCATTATGCTTATCTTTTCCTCTTAGCATGATAGGAAATcaaaaaataaatatgtatttggtcaGTGTACGTTTCCTTATTTTGATTTTCGAGTCAAAACAGAGTGGAAAAACAAGACGGctaaaaacatttttgaatt

Function

GO: NA

KEGG:

id description
K00650 LCAT; lecithin-cholesterol acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196213 lncRNA upstream 58161 65730812 ~ 65734428 (+) True G172525
TU196225 lncRNA upstream 73924 65718453 ~ 65718665 (+) True G172536
TU196224 lncRNA upstream 74296 65717922 ~ 65718293 (+) True G172535
TU196219 lncRNA upstream 80151 65711596 ~ 65712438 (+) True G172531
TU196196 lncRNA upstream 108095 65684102 ~ 65684494 (+) True G172510
TU196279 lncRNA downstream 38330 65840302 ~ 65840526 (+) True G172581
TU196280 lncRNA downstream 40276 65842248 ~ 65845537 (+) True G172582
TU196281 lncRNA downstream 45025 65846997 ~ 65847232 (+) True G172583
TU196284 lncRNA downstream 46981 65848953 ~ 65849166 (+) True G172586
TU196296 lncRNA downstream 67357 65869329 ~ 65870268 (+) True G172592
XM_021568438.2 mRNA upstream 143929 65593468 ~ 65648660 (+) False jph3
XM_021568445.2 mRNA upstream 143929 65593468 ~ 65648660 (+) False jph3
XM_036953227.1 mRNA upstream 255807 65531126 ~ 65536782 (+) False map1lc3b
XM_036953106.1 mRNA upstream 767724 64866284 ~ 65024865 (+) False LOC110493825
XM_036953095.1 mRNA upstream 767724 64866285 ~ 65024865 (+) True LOC110493825
XM_021568592.2 mRNA downstream 10258 65812230 ~ 65821040 (+) True pla2g15
XM_021568579.2 mRNA downstream 28143 65830115 ~ 65839097 (+) False znf319b
XM_021568571.2 mRNA downstream 28147 65830119 ~ 65839097 (+) True znf319b
XM_036953375.1 mRNA downstream 50533 65852505 ~ 65865562 (+) False LOC110493986
XM_036953369.1 mRNA downstream 50536 65852508 ~ 65865562 (+) False LOC110493986
TU196056 other upstream 151613 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 151613 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 255802 65531146 ~ 65536787 (+) True map1lc3b
TU193612 other upstream 1914356 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 1962269 63820461 ~ 63830320 (+) True G170131
TU196344 other downstream 133624 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 460654 66262626 ~ 66266023 (+) True LOC110494096
TU197812 other downstream 939848 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 1153552 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 1436918 67238890 ~ 67239896 (+) True LOC110494472

Expression Profile