RNA id: XM_036953375.1


Basic Information

Item Value
RNA id XM_036953375.1
length 2262
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110493986
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65852505 ~ 65865705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGTTTCCGGGTACACTTTCTATCGCAATCCGGTTTCTTGCGGTTCGGAATAAGGGGCGGAGGCGGGGGCGGGGGGTCTATAAAGAAAGCCCCAAAACCCGAACTCCAACAGGTTTTTCAAGCGAATTTTTAGGTGGTCTTCACTCCGACTGCATATGCCACGGGCCCACGTGGATGCATTGCACCGCGCTCAACGGTGGCGCGATTCTGACtgagttagcatgctagctaacaaAATGTATTTATACTCCACCCATCTCCAACCGGCTGTAGCGACTAGTCAATACCCCATATTTAGGGGTGAGCTGTAAAACCCAACTTCTCTATTGGACTTTTCCGTTCAATTCCTCACTATCCACCCGCTGGAAGATTGTTGCATTGGGAGGGCCATAACAAGAAGAGTGTACTCTGGTAGGAACCCAGTTTTGGATTCGGGATTTAAGGCCCACAAGGGGGTTGGGGGTTTATACCACAATCATTTGATCCCTAAACCCACCATGCCTGGCATCTCGGTCagtgttttggtcacttttaatAAAAATGTTTGCCTTTTATTTTATGTAAATCGTGGCAGTTCTTGAATTTGGCTTTCTACCTCAACACTCCATTTTCATTCTCCTCCCAGACGTCTTAACACTAGCAGTATCTGACGGCCCTCGTCTCCCCTTATCCATCATCAACCTCGGTGCGCAGCGCACTGTGGTCATCTCTCGCGGGGGAAAATATAAGATAATAGGAACCACCTTACTCGGACAAAGCGAGGCTCCGACAAGAGAACGGTGATCTGTGTTCCCTTTCCAAATAGCAAACGAGCTCTGTGGCAATCGAATCCTCAAAACAGACCGGGCTCCGGTGCTCGCCATGCCCGGCCCGGCGGCCGGCAGTAAATCTCGGGTGTATGCCGATGTCAACACGTTGAAGAGCAGGGAATATTGGGACTACGAAACCCACGTGCCTAACTGGAGTAACCAGGAAGACTACCAGTTGGTGCGGAAGCTCGGCAGAGGGAAGTACAGTGAGGTCTTTGAGGCCATCAACAACAATGAGAAGGTGGTTGTCAAGATCCTCAAGgttgccaataattatggaccccACTGTACCACATCACATTGTCCAACCTgtcaagaagaagaaaatcaaGCGTGAAATCAAGATCCTGGAGAATTTGCGAGGTGGAGCCAACATCATCCGATTGGTGGACACAGTGAAAGACCCTGTGGAGCTCTACCAGAAGTTAACAGATTTTGATATCCGTTTTTACATGTATGAACTACTTAAGGCTCTGGACTACTGCCACAGTATGGGGATAATGCACCGTGATGTCAAGCCCCACAATGTGATGATTGACCACCAGATGAGGAAGCTACGTCTAATAGACTGGGGCCTTGCAGAGTTCTACCATCCTGCACAGGAATACAACGTCAGAGTAGCATCTCGCTACTTTAAGGGACCTGAGTTACTGGTGGATTACCAGATGTACGACTACAGTTTGGACATGTGGAGTCTTGGCTGCATGCTTGCCAGTATGATCTTTCAGAAAGAGCCCTTCTTCCATGGCCAGGACAATTATGACCAGCTAGTCCGAATTGCCAAAGTCCTGGGGACAGATGAACTTTTTGGTTACCTGCGCAAATACCACATTGAACTGGACCCACGCTTCAAGGACCTTCTTGGCCAACAGACGCGGAAACGCTGGGAGCAATTTGTCCAGACCGAGAACCAGCACCTGGTTAGCCCTGAGGCTCTGGACCTGCTGGATAAGCTGCTGCGCTACGACCATCAGCAGAGACTGACGGCCACAGAGGCCATGGAGCACCCCTACTTCTATCCTGTGCTGAAGGAACAGTCTCTCTCTAATGCGGATGGCAATATGATGTCCAGTGGATCCACTACGGCTCGATGAAAGCAGgaggatttttttttacctcgACTTTTTAGCCCTTTGTGGCAGAAACTTCTTCAAGTGTACAGTGACAATGGATCAGAGCGACACCAGACACACACCTTCTCTTTGTCAGTCTGAGGTTGACTTGCCCCAGTTACATGTCAAGCAGCCAGACCAATGAGCTTGGTGTCTCACTGCTGCCCCTGTCCTTCTCTGCCCCCTCCTCTTATCACGAGGTAAACAGAAAATGTTCAAAGACAAGAAAAAGAGGATCCTTCCCTGTCATTACCCCCCACCCCCTTGGCCCCCCTCCCTCGTTTAACTAAGCATGGAGTATGAAAGGGAACGTGAGCCTGCCACCGTCCCCCCTCCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196284 lncRNA upstream 3339 65848953 ~ 65849166 (+) True G172586
TU196281 lncRNA upstream 5273 65846997 ~ 65847232 (+) True G172583
TU196280 lncRNA upstream 6968 65842248 ~ 65845537 (+) True G172582
TU196279 lncRNA upstream 11979 65840302 ~ 65840526 (+) True G172581
TU196213 lncRNA upstream 118077 65730812 ~ 65734428 (+) True G172525
TU196296 lncRNA downstream 3767 65869329 ~ 65870268 (+) True G172592
TU196335 lncRNA downstream 53351 65918913 ~ 65919218 (+) True G172630
TU196342 lncRNA downstream 63802 65929364 ~ 65929679 (+) True G172637
TU196370 lncRNA downstream 100311 65965873 ~ 65970958 (+) True G172658
TU196352 lncRNA downstream 133333 65998895 ~ 65999564 (+) True LOC110494008
XM_021568579.2 mRNA upstream 13408 65830115 ~ 65839097 (+) False znf319b
XM_021568571.2 mRNA upstream 13408 65830119 ~ 65839097 (+) True znf319b
XM_021568592.2 mRNA upstream 31465 65812230 ~ 65821040 (+) True pla2g15
XM_021568559.2 mRNA upstream 50533 65792589 ~ 65801972 (+) True lcat
XM_021568438.2 mRNA upstream 203845 65593468 ~ 65648660 (+) False jph3
XM_021568646.2 mRNA downstream 19231 65884793 ~ 65917366 (+) True LOC110493994
XM_036953388.1 mRNA downstream 77597 65943159 ~ 65958750 (+) True LOC110494001
XM_036953398.1 mRNA downstream 110183 65975745 ~ 66031253 (+) False LOC110494008
XM_036953395.1 mRNA downstream 110186 65975748 ~ 66029763 (+) False LOC110494008
XM_036953407.1 mRNA downstream 110186 65975748 ~ 66030944 (+) False LOC110494008
TU196056 other upstream 211529 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 211529 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 315718 65531146 ~ 65536787 (+) True map1lc3b
TU193612 other upstream 1974272 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 2022185 63820461 ~ 63830320 (+) True G170131
TU196344 other downstream 70034 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 397064 66262626 ~ 66266023 (+) True LOC110494096
TU197812 other downstream 876258 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 1089962 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 1373328 67238890 ~ 67239896 (+) True LOC110494472

Expression Profile