RNA id: XM_036953398.1


Basic Information

Item Value
RNA id XM_036953398.1
length 2481
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110494008
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65975745 ~ 66031253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGGGAGCTCCACACCCTGAAGGGAGGTAGAAGTTTCACTGCATTCCTGTCCTGCAACTCCGACTCACCCATCTGCAAGGACATatccgtagtgtgtgtgtgtttgtggctctGTTCAGGacccctgaacaggcccccacCTTGATTTCAGGACCATATTGTGTGTATATTAGTTTGTGTTAAAACGTCACGTCGGAGGGGGTGTGGGCCAGACATCCGCATACGCCTATTGACCTAAACCTCAGCACATTGTCAGGGACGTGATGACGTCGATGGGTGATAAAGGCTCTGTCCAGACACAGACTAAGGTCCTGTCCCAGGACTCATGGACGCAGGTCAGCTGTCCCTGCTGTGTGTCTAAGCAGGTGGAGCCCCTGGTCCTCATCCAGCTGTCAGACAACGTCCAGCCTGTCACCAAGAGGTGGCTCATCTCCCTGATTGAAACTTCAAAGAGACACGGAGGAGCAGCTTTGCTGGCCCACCCTGGAGAGGATGAGTGTGGGGATGTGGTCGTGGTGTCTGCTCCTCGCTGTACATTCCTCAAAGCCACGGAGGACCTGGGTCTGTGTAAGAAATACCACAATGAAGACATGGTTGCTTTCTCCTACCACGACAGAGACAACTTCAGCAATGTTGATGACATGCAGGAGTTCCTGACGCTAGCGGAGCGTCAGTACATAGTCAAGAATGAGCTGGACTCTCTACAGGCCCAGAAGAAGCAGAGAATCCCTGGAGTCCCAGAGGCTCCGGGGGTCCTGGAGGCCTGGGAAAACATCTGTCAGAAGCTGGTGAGGGCAGGAGTGATAAAGGACATCTTCCCTCTACATGACCAGCAGAGACTGAATGACCTCGGAAGAAGGTGGTACTCTAAGAAGCAGATATGGGGACAGCCTCTCGATGCAATACAATCATATTTTGGAAGCACCGTGGCGTTTTACTTCAGTTTTCTAGACTTCTACACCTGGGCCCTGATTCCCCCTGCCTTCCTGGGCCTTGTCCTGACCTTTCTGCTGCCTGGAGGTGGTGGCGTGGTGAAGGAGCAGGCCGGGgagggggtgatggaggaggacgACGATGGCCCCTCGGTCAGCGGTCACATGGTACAGGCTGTATTCAGCATGCTGTGGTCCACGCTGTTCATCGAATTGTGGAAGCGGCGGagctcctccctctcccaccgcTGGGGCACACTGAACCTGGCCGAGCGCTTCGCGGGGCCCCGCCCTGGCTTCCACGGTACCCTGGGGCTCAACCCTGAAACAGGCCGTCTGGAGCCCCTGTTCCCGGAGTGGCAGAGGCAGCTGCGTGTAGGCTTGGTGTCGTTGCCCTTAGTGGGGCTGTTCCTGGGACTGGTGGTGCTGGGAATGACTTGCTTCTACCACGGAGAGGCCCTGGTACAGGGCTTCCATCAGGACAGCGGCTCCCTGTTCTCTGGAGTTCTGCTCTACATGCCCTCCATAGCCCACATTGTCTACACCAACATGCTGGGGAATGTGTACCATGCTGTGGCCATGCAACTCACCgagtgggAAAACCACAGAGAGGAGTCCTCCTTCCAGAACCATCATACCACCAAAGTCCTCCTGTTTACTTTCTTCAACAACTTTGCTGTGCTCTTCCACATTGCCTTTTACAAACAGGACCTACCACTGCTACGCAAGAGGCTTGCCTCTATGCTAATTGGGAACCAGCTGGTGAACCAGTGTACAGAGGTGGTAGTGCCGTTTATAGTCGACCGCTTCCTCAGTGCTCCCCATAAGAAAGAGCAGGAGGACGACCTAGAGATGGACAAACTCAGAGCCCAGAGAAGCCTTCCCCCTTATCCAAGATCCGAGGGGATGCCTACAAGATCTGCAAACTGTTCCGGAAGCCATTCTCTGCCCCAGTGTCCAATATGGGGGTGTGGCAGACAGCGTTTGAGGTTCTGGGCTTTGTCTCAGTCATGTCTAACTGCTGGCTGCTGCCTCCTCGGGTTAGGCAGTTCTGTCTGGAGGGAGGGATCAGCGGCAAGAACATCATACTCTTCACCATCCTGGTGGAGAAACTTTGAAGGCTGTGGAACCCCTGAGGGTGTTCGTGTTTCCCATCCAGTGCTGGTCTGGAGACTCTGGACCTGGGTGCTCATTAGAACCAGCTGCCACGACGAAGATGGTGATGATCCACAGACAAGTCTGGGAGCTGAGCCATGAGAGCCTGCTCTCCGCCCCAAGAAACTCTGTCAGTATCTCCCTCTGGAGGACTGCTTCAGTCATAACTAGAGTGGTCTCTCATGTCATGGGAGATACTAGAGAGAAGGCCAGGGACTAAAGGGAAACGCAAAGAAGAAGAGCTAAGTTCATTGTGTTAATATAGCATTAGCATACTTTTTTTTTCATGTTGCATATCATTTTGTAAAATGTTCCCACAGTGTGCTCCATGTAATTCCCCATTATCAGTGTTACATTGTACGCTTAACTTCTAATAGGCACATCACAAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196370 lncRNA upstream 4787 65965873 ~ 65970958 (+) True G172658
TU196342 lncRNA upstream 46066 65929364 ~ 65929679 (+) True G172637
TU196335 lncRNA upstream 56527 65918913 ~ 65919218 (+) True G172630
TU196296 lncRNA upstream 105477 65869329 ~ 65870268 (+) True G172592
TU196284 lncRNA upstream 126579 65848953 ~ 65849166 (+) True G172586
TU196314 lncRNA downstream 328744 66359997 ~ 66363470 (+) True LOC110494202
TU197656 lncRNA downstream 498862 66530115 ~ 66530338 (+) True G173804
TU197657 lncRNA downstream 499199 66530452 ~ 66530710 (+) True G173805
TU197658 lncRNA downstream 500413 66531666 ~ 66531887 (+) True G173806
TU197660 lncRNA downstream 502205 66533458 ~ 66533659 (+) True G173808
XM_036953388.1 mRNA upstream 16995 65943159 ~ 65958750 (+) True LOC110494001
XM_021568646.2 mRNA upstream 58379 65884793 ~ 65917366 (+) True LOC110493994
XM_036953346.1 mRNA upstream 110040 65852513 ~ 65865705 (+) True LOC110493986
XM_036953361.1 mRNA upstream 110183 65852510 ~ 65865562 (+) False LOC110493986
XM_021568702.2 mRNA downstream 42038 66073291 ~ 66083738 (+) False ldhd
XM_021568708.2 mRNA downstream 42040 66073293 ~ 66083957 (+) False ldhd
XM_021568693.2 mRNA downstream 42041 66073294 ~ 66084029 (+) True ldhd
XM_021568733.2 mRNA downstream 88673 66119926 ~ 66135667 (+) True gins3
XM_036953459.1 mRNA downstream 114337 66145590 ~ 66190766 (+) False LOC110494051
TU196344 other upstream 39612 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 334769 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 334769 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 438958 65531146 ~ 65536787 (+) True map1lc3b
TU193612 other upstream 2097512 63873248 ~ 63878233 (+) True G170150
TU196564 other downstream 231373 66262626 ~ 66266023 (+) True LOC110494096
TU197812 other downstream 710567 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 924271 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 1207637 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 1454910 67486163 ~ 67488201 (+) True hsbp1b

Expression Profile