RNA id: XM_036953540.1


Basic Information

Item Value
RNA id XM_036953540.1
length 4636
RNA type mRNA
GC content 0.51
exon number 8
gene id smpd3
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66223586 ~ 66256972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCGAGCACAAGTAGTGTGTTCAGAGATCAGAGGCAGAGATCGTCACATTCAGGCCTGGTCATACTGTAGGTTCAGCATCCTGCCGTCTAGCACCACCAGGGGTGGGCTACAGTGATGCACTGGCCTGTCTTCAGCAGGAGTGGACCCAGCAGAGCAAACACTGCAACAAAATAGCAGATTGTTTCAGACAGCAAACACCCTCTCTGTTCTGAAGCTGAGATGGTACTGAGATTCACTTCTTCATAGATCCGCCTTCCTGGTGTCCATGGTTTCCTTCTGACTACAGCAGCTAGTTCCACATCATCAAGATGATCTCCACCCAGAGACTCTAGTTCCTCATTCCTCCATTGGAGGACCACtgtggtgaggggagggggagggtgaaGGAGCCTCCTGCCATCAGGCAAATAGCTGCAGAGCCTGCTGGTGAAAGCGAAGGGAACCATGTAGTGTTCATTTCTCCACCCAGGGGGAGGGTAGATTTGAGTCAAGTTTGTTTTCCATTGATTTTAGTGTGAGAGTGTTTTATGTGAGCCAGAGATGGTCCTCCACACCTCTCCCTACTCCAGTGCCTTCCTGCGGTGCCTCACTAGCCTGTCATGGGGCTTTATATTCCCCTGCTACTGGCTGCTGGACCGCCTGCTAGCCTCCTGTGTGGCCACCTCTCTGGAAAAGCGCCGGCGCTCCCAGGACCCCTGCTCCTTTGTGACGCTGTATGTGCTGGTGTCCACTCCGCTCTACCTGCTGCTCCTCCTGGCCTCGCTGCCCTTCGCTCTGCTGGGCTTCCTGCTGTGGGCTCCCCTGCAAGCGGCCCGCCATCCCTATCTCTACACCCACCGCAGCCCGAACAAGCACCAGGCAGAGCAGGGGGGCGCGGCATCACTGGCCGACTGGAGGCCGCAAGGCCGCAGCTTCTGCTTCGGCAGTGCCAACGTGTGCCTACTGCCAGACTCCCTGGCACGCTTCAACAACCTGTCTGAGACCCAGCGCCGTGCCCGCGAGGTGGGAAAGCGCATCCGTAACGGGGCCAGCCGGCCGCAGATCAAGATATACATCGACTCCCCCACCAACACCTCCATCAGCGCAGTCTCCTTCAGCAGCCTGGTCACGGGGTTCCCACGCACCTCCTCACTGGACCAGCGGCCTGACAACACAGCCGAGGCCGAACCCCTCACTGGGTGCCCTGTACACAATTCTAGTGCAGACTGCCCAATACACACTGCCGGTGCAGACTGCCCCATACCCACCACTGGTGATGACTGCCCCATACACCCAACAGGGAACCAGAGCTCCTCAGATTGTCCCGTCCACGTAGCTGGTGGAGAGAACACACCAGAGTGCCCGCTTCACGCTGCTGGTGCCCATAACAGCTCTGACTGCCCTGTTCACACCACAGTGGCCCAGAACTCCCCAGACTGCCCAATGCACGCCTCTGGGGTCCAGATTAGTATCAGTGCCCCAGAGCCAGACCCCCCAGAGGCCGAGACAGGAAACCACCAAGGCGAGGGTGACGCGGAGAGCCTGACAGGGGGGGTGCCTTCTAACAACATCCTGTCCCACCGCACCTCCATGTTCAAGAAGCACAGCGGCCGCAAGCGGCGCCAAGGAGACGACGGCATCGACCACGAGATCTCTGCCTTCTTCCCTGCCAACCTGGACTTCCTGTGTCTGCAGGAAGTGTTTGACCACCGGGCCACGTCCAGGCTGAGGCGGCAGCTGCAACACTACTTCCCCTATATCCTGAGTGATGTGGGCCGCTACGCCTGGAAGGGCTGCTGCTCCCGCTTCAAGTTCCTCAACAGTGGCGTTATGCTGGTCAGCCGCTACCCCATCCTGGACGCCCACTATGAGTGCTACCCTAACGGGCGAGGGGAAGATGCCCTAGCAGCCAAAGGAGCTCTCTTTGTCAAGGTGCAGGTGGGAACCTCCCATCAGGAGCAGAGAGTTGTGGGATACCTCACCTGCACTCATCTACACGCCATTGAAGGAGATGCAGCTGTGCGTTGTGAGCAGTTGGATCTACTCTTGGAGTGGGGGACGGATTTCCGCAAGGCAACGTCCCGCCCCTCAGAGGAGAAGGGTCTGGAGGACCAGGTGGCCTTTGATGTTGTCCTCGGCGACCTCAATTTTGACAATTGCTCTTCAGAGgataaactggagcagcagcattcCCTCTTCACGCAGTACAAGGACCCGTGTCGCCTGGGGCCAGGGGAGGACAAGCCATGGGCTCTGGGAACACTACTGGACACCAGTGGGCTTTATGACGAGGAGGTCAGTTCACCAGAGAGTTTACAAAAAGTGATGGAgaatgaggaggggaggaaggaataCCTGGTGTTCCCCACCAATAAAAACCACTGTCCTAATCAGAAGGGCAGAAAGATCCCCCTGAAAGGCAACGGGAGGAGGATCGACTACATCCTTTACAGTGAGGCGGTGCAGCAGGACTGGAAAATGGACATTGAAGAGTTTAGCTTCATCACCCAGCTGGCCGGCCTCACTGACCACCTGTCTGTGGCCATGCGTCTGGCTGTGtccacaggagaggaggagccttAGGCCTACACCCTTTATACTGCCACGGAGGAAGAACGGGGACCGAAGAGGCAGAGGGAAGGCAAGGAACTCAGGCCTGAGAAAGACAGAGCTTGAAAAAGGAAAAGAAACGGGTGGACATAACGAAGAAGAAATAAAGGAGCAGATGCAGAGGAGTCATGTGATTCAGAGAgaacctggtggagagagataagagagtgGTTGTTGTGTGTGCCAGAGGTCTGGACCGGGCCCAATGCGGACCTGAGGGACTGAGCCAaagactcacacaaacacacacagtctgaggtTGACTCACACACCGTACCATGTATCACCTCTGGTCCTCGGGGTCTATCAGCTCCCTGATGATGGAGTCACAATGATTGACTTACTATGACTCATTTCCTGTATTTAGATACTTTTATGTTTTTAGGCCTCATTTATGTCTGACCTTTTTCTGTTTTTACCTTTTGGGCTCGGAAGCGTCTAAACGTTGTTCTTTATTTGATTTAAAACGGTGACATGAGACTTCTCTTGACTCATGGAATTTAGAGTGTAGCCTGgcttactgtgtctctgtgttggtgtgtttgttcCTCTCTTACCTTAACCCCAATTCATGGAACCTCGGCATAATGTCTTTTTTTCTAACTCTTTCTAATGGTTTCTATGGTCAACGTACCATCTTTGTAGGGAGTTGAAACACCCACATTTAATACTTTAAATTTATAATGAGGTATTGTATGAAAAATAACATCTGAAAGGGATCTATCTTTTCGGGGCCAATCTGACTGGCATCTCATGTTTCAGTGGTTGTTTGGTTGTTATGCAGAGCTGAGCAGTGAGGAACACGTGATATGATTAGATAAGAGGAACTTAGTTAGGAGGGCCTGGGTGGGGgagcgggggggggggttctgcatGGGGAGTGTAGTGAGGATATCAGATGCAATCCCTCAATAAGAATTTTAATCACAGACTGTTTGGGTTGAAAGCCTGGTCTCCAGGGCAATAAGCATGTTCCCCTGATAATGCAATCTCAAATGCTGCCAATGCAATGAGTCTGCATGAAATGCCACCCTGCCaaaacccacaaacacacacacctgcatactCATTACATACACAGACACCATTGGCACTGATGCCTGCCTCATTTGTGACAACACCTTTTTACTCTCTCACCTGTTCTTATTGACACTGTTGCTATTGCTGGCTGTATCACAGGATGATAAGGGATGTGCGTATGTGTGCAGAACTGGCTTTGGGATATGTGACGACCCCATGTCCCACTTTAGCATGGTGCAGTATTTATAGATCTTATTCCTGGTTGTGGCCACAGCAGAGGCAAAAGTTTACACACCTGCTTACTTGTTTCAGGTCATGGAGGGATCCTGGTCGGTCAGAATATCTCTGTACTTtaatatgtatttactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgtactgtatgtatgcccACCTGGCGTTTCTACTCATCTACTATCACCTGGCTGCTTTTATACGCTCTAAAGCCTCTTTATTATtcttattattagtagtattagtagtagtagtattggtagggTTTATATTTGTGCTTTTTTAATACAGTACATGGTCCATCTTGCATTGATCTGTTCCATATTTAGGATGCTGCAGTTCCCTGGTTTAGTTCACAAACTCATAGAGATAACATCTCCCTTGTGCTGGTCTGACTCTCCAGTCCCTCAGCCTCTCCGCGGTTGGGCCTGTTTTTGAGTCAGGGACTGGGGGGGTCAAGGGGCAGGCAGGGGGACTGCTGTAAAGTGTTATGATGATGCTCCATGGCTTCTAGTCTCTCCACAGATAATGCATCACATTGCTATTCTTTTGATTTTGTTCTCTATAATAACTGATGGTCACTGATGGTTTTGTAAAAATCATTTTGTGGGGAATGCTGCTTTGGGGTAGCCTCGTTATCTGAGTGATGTGGCAGGGAATTGGCTCTCTTTTTTTAAGCTTATTCAACAGCTTATTTTcttctgctttaaaaaaaatatatattttccctcTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196352 lncRNA upstream 235547 65998895 ~ 65999564 (+) True LOC110494008
TU196370 lncRNA upstream 264153 65965873 ~ 65970958 (+) True G172658
TU196342 lncRNA upstream 305432 65929364 ~ 65929679 (+) True G172637
TU196335 lncRNA upstream 315893 65918913 ~ 65919218 (+) True G172630
TU196296 lncRNA upstream 364843 65869329 ~ 65870268 (+) True G172592
TU196314 lncRNA downstream 103025 66359997 ~ 66363470 (+) True LOC110494202
TU197656 lncRNA downstream 273143 66530115 ~ 66530338 (+) True G173804
TU197657 lncRNA downstream 273480 66530452 ~ 66530710 (+) True G173805
TU197658 lncRNA downstream 274694 66531666 ~ 66531887 (+) True G173806
TU197660 lncRNA downstream 276486 66533458 ~ 66533659 (+) True G173808
XM_021568771.2 mRNA upstream 24511 66207849 ~ 66210600 (+) True si:ch211-194m7.8
XM_036953487.1 mRNA upstream 44345 66145590 ~ 66190766 (+) False LOC110494051
XM_021568818.2 mRNA downstream 5622 66262594 ~ 66266024 (+) False LOC110494096
XM_021568868.2 mRNA downstream 9878 66266850 ~ 66298314 (+) False LOC110494104
XM_021568859.2 mRNA downstream 9953 66266925 ~ 66298314 (+) False LOC110494104
XM_021568829.2 mRNA downstream 20876 66277848 ~ 66298314 (+) False LOC110494104
XM_021568850.2 mRNA downstream 20876 66277848 ~ 66298314 (+) True LOC110494104
TU196344 other upstream 298978 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 594135 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 594135 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 698324 65531146 ~ 65536787 (+) True map1lc3b
TU193612 other upstream 2356878 63873248 ~ 63878233 (+) True G170150
TU196564 other downstream 5654 66262626 ~ 66266023 (+) True LOC110494096
TU197812 other downstream 484848 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 698552 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 981918 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 1229191 67486163 ~ 67488201 (+) True hsbp1b

Expression Profile