RNA id: XM_021568859.2


Basic Information

Item Value
RNA id XM_021568859.2
length 3411
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110494104
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66266850 ~ 66298314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGACACAATCGCCTTTTGAGATTTGTAGCTTGGGGAAAAAAATCCCTTCTGCTGTTCATGATGCTTTACTAGTGGTATGTCGATACCACCTACCCAATTTCATTATTTTGGGCCCGTTTAGAGGCATTAGGGTTCTGttgctacatttaaaaaaaaaaaacgttaaatTGCCTGAATAGGACGTGTCTTTTGAAAGCAGCGTCTCTAACGCTTTTGTTTCGTAGTTTTCTTATTTTTTGTATGCCTGATTTCTTCGgctcctgggtgggtggtgtcaCACTAGTACTACAATGATCGAACGACCAGAATCTACAGTTGCCAGCATTGCACAGAGGAATCTGGAGGGGTATGTGGGGTTCGCCAACCTCCCCAACCAAGTGTACAGGAAGTCAGTGAAGAGGGGCTTTGAGTTCACACTAATGGTTGTTGGTGAGTCTGGATTGGGGAAATCCACGCTCATCAACTCCCTCTTCCTGACTGACCTGTACTCCAAGGATTACCCTGGCCCATCCCTACGGATCAAGAAGACTGTGCagGTGGAGCAGTCCAAGGTTCTGGTGAAGGAAGGGGGTGTCCAGCTCACTCTCACCATCGTCGATACGCCAGGGTTTGGAGATGCAGTGGACAATAGTAACTGCTGGCAGCCTGTCATTAACTTCATTGACAGTAAGTGTGAGGACTTCCTGAATGCAGAGTCCAGGGTGAACCGACGACTGATGCCAGACAACAGAGTTCACTGCTGCCTGTACTTCATCGCCCCCTCTGGCCACGGGCTGAAGCCCCTGGACATTGAGTTCATGAAGCGTCTCCATGACAAGGTCAACGTGATCCCTCTAATCGCCAAGGCAGACACTCTGACACCTGAAGAATGCCAGCTGTTCAAGaaacagATCATGAAGGAAATCCAAGAACACAAGATCAGAATCTATGAGTTTCCTGACACCGAGGACGATGAGGACAGCAAGCTCATCCGGAAGATCAAGGAGCGGATGCCTCTGGCAGTGGTTGGCAGCAACGTGGTGATTGAAGTGAACGGCAAGAAGGTCAGAGGTCGTCAGTACCCCTGGGGCGTGGCAGAAGAGGGCATTTTTGTGGAGAACGGGGAGCACTGTGACTTCACTGTGTTACGGAACATGCTGATCagGACCCATATGCAAGATCTGAAGGATGTGACCAACAACGTCCACTATGAGAACTACCGCAGCAAAAAGCTTGCTGCCGTAACTTGCAATGGAGGAGTGGACACCAGCAAGACCAAGAACCAAATGACCAGGAGCCCCCTGGCCCAGATGGAGGAGGAGCGGAGGGAACATGTCATGAAGATGAAGAAGATGGAAACAGAGATGGAGCAGGTGTTTGAGATGAAGGTCAAGGAGAAGAAACAGAAACTGAAGGACTCTGaggctgagCTGGAGCGACGCCACGAGCAGATGAAAAAGAACTTGGAGGTTCAGTATAAAGAACTGGAGGAGAAGCGGCGTCACCATGAGGAAGAGAAGTCAAACTGGGAGGCACAGCAACGTATACTGGAGCAGCAGAAACTTGACGCTTCTAAgaccATGGAAAAGAACAAAAAGAAGGGAAAAATATTTTAAGTTGAACCTATTCCTCCAATTAAATATTGCAAACTTGTTTTTACATCCTTTTTGATGTTCACACAATCTATGACCCTCaaaccatatatatatacacacacacacacgcaaataaGCCGCGTTCACACTGCACTTAGCTCAGGGCTAAGAGGGTGTTTACGCTTGCACTTTCTAAAGTGGGCGTGCTGACCCTATTGTACTATTTAGGTCATACATGGACCTCACATGCATCTCATTCAGTACATACAACAACACGCCCCAATGTCACACTCAtgcaccactatacacacacacatagccacaTCCCTCTTTTGGGGGTCTGCCAAAACCTTTTATTTCTATTCCTGACAAGGAGGAAATTATTTCCCTCTGATCTTTGGAGTTTTACACATGGCAGGCATCATGCATAGCCATCCTTTATACTAGTGTACTACAATCTGTTCTCTAGCTAGCtcacctgtttcttccagcagaGGCAGCTCAAGACCATTCACAAGCACACTCCATTGTGACATATGTAAACACAATTACGTATGCTCGGACATTCCCTGAACTCCTGGGACATGTGCATGTTAAACACACACTTGTAGGTGGTTATTAAGGGTTTGAGTCAGGTGCGAGTGTACAAGAAACAGGAAAATAATTGTTTTGAATTATGACAGTCAAAAGCCAAGTCGAGATGAAAAAGCCAGGTTCAGGAAAGGGGGTGACCTATCTTaaatgtgtgtgtacttgtgtgtgggtgcctgtgtgtgtgcacgtgcctgTAAACCATGTGTTTGTGTCTTCTATTTTACTAATAGAAGACACACTTAACGGTATAAACAGTAACATTGTCAGTGTCATAACATTCTCTGGATACTGAAGCAGATAATTATGTCCCTATTATATAGATAATGTTACACAAATCATATGGGTGTCTAAAACAATGATAACCGTGATTATGGCAATGTCTTATATTGTGAAGTGATGGATTTTGTCAAAGACCTAAACCTAAAGCCCTATCAATCCCTTGTCCCCTGTTCTGAAGACTGTACCGAGAGCGCTAAATGCATGGGTTTGTCCCAAACGCATGGTGAGACTCTGACACTGAGACACATTGTGTGACACCTCTAAACCCTTACCTCTCTGAGGTCCGTCAAGTTTTATTTGAATATATTATGTATGTATGGTTGGACAACAATCCCTTGAATCCAGTAGGATCATTTAAGTGGTTCAACAATTATTATTTTAGTGTAGTCTTGATTTTTACAAACCTCTAGAAATCTTAAGATGCACTTGAAGACATGCAAAAGGGACACAGAAAATGCACAGATAAATACAACACACATATTTTAAAAAACTGTCATTTTCTTCTGGTTCACATACATCATGAAATTGACTGTAAATTGTTATATACTTCACAACTGAACACAAGCCCCAAATCCCAGAAGACAACCTCTGACCCAACCTACACTGCCTTCACaagccacactcacacacacaataatactCTATGCCAACTGTATGCTTTCTCAGGACCAGTCTCTTGTTGCAGGTCTCTGAGTTGTAATAGTCAGAAGTTAGTCCGTGGTCTGAGAAGTCTTAAAGGCTCATTTGAGCTAAGGTCTGAGACAAACTTTTCCTAAATCATTCTTTAACCACTCCCCTATCTAATAATGTTGAAGGTAGCCATAACTTTAggagttgtttttttatttttattttttatatatatctaCACTCTTCAGCTTTATTCTGTTCTTCATTTTATTATCATCTGTTCTCTCTAACTGTACATTATTAATATTAAAGATGAGAAGGTTATGCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196352 lncRNA upstream 267361 65998895 ~ 65999564 (+) True LOC110494008
TU196370 lncRNA upstream 295967 65965873 ~ 65970958 (+) True G172658
TU196342 lncRNA upstream 337246 65929364 ~ 65929679 (+) True G172637
TU196335 lncRNA upstream 347707 65918913 ~ 65919218 (+) True G172630
TU196296 lncRNA upstream 396657 65869329 ~ 65870268 (+) True G172592
TU196314 lncRNA downstream 61683 66359997 ~ 66363470 (+) True LOC110494202
TU197656 lncRNA downstream 231801 66530115 ~ 66530338 (+) True G173804
TU197657 lncRNA downstream 232138 66530452 ~ 66530710 (+) True G173805
TU197658 lncRNA downstream 233352 66531666 ~ 66531887 (+) True G173806
TU197660 lncRNA downstream 235144 66533458 ~ 66533659 (+) True G173808
XM_021568818.2 mRNA upstream 901 66262594 ~ 66266024 (+) False LOC110494096
XM_036953530.1 mRNA upstream 9953 66223586 ~ 66256972 (+) False smpd3
XM_036953540.1 mRNA upstream 9953 66235111 ~ 66256972 (+) True smpd3
XM_021568771.2 mRNA upstream 56325 66207849 ~ 66210600 (+) True si:ch211-194m7.8
XM_036953497.1 mRNA upstream 76159 66172939 ~ 66190766 (+) True LOC110494051
XM_021568953.2 mRNA downstream 7605 66305919 ~ 66332389 (+) False LOC110494127
XM_021568962.2 mRNA downstream 7605 66305919 ~ 66332389 (+) False LOC110494127
XM_021568972.2 mRNA downstream 7605 66305919 ~ 66332389 (+) False LOC110494127
XM_021568980.2 mRNA downstream 7605 66305919 ~ 66332389 (+) False LOC110494127
XM_021568989.2 mRNA downstream 7605 66305919 ~ 66332389 (+) False LOC110494127
TU196564 other upstream 902 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 330792 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 625949 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 625949 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 730138 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 443506 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 657210 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 940576 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 1187849 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2562524 68860838 ~ 68861368 (+) True G176612

Expression Profile