RNA id: TU197458


Basic Information

Item Value
RNA id TU197458
length 2713
RNA type TUCP
GC content 0.43
exon number 14
gene id LOC110494122
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66277821 ~ 66299637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAGCATAACCTTCTCATCTTTAATATTAATAATGTACAGTTAGAGAGAACAGATGATAATAAAATGAAGAACAGAATAAAGCTGAAGAGTGtagatatatataaaaaataaaaataaaaaaacaactccTAAAGTTATGGCTACCTTCAACATTATTAGATAGGGGAGTGGTTAAAGAATGATTTAGGAAAAGTTTGTCTCAGACCTTAGCTCAAATGAGCCTTTAAGACTTCTCAGACCACGGACTAACTTCTGACTATTACAACTCAGAGACCTGCAACAAGAGACTGGTCCTGAGAAAGCATACAGTTGGCATAGagtattattgtgtgtgtgagtgtggcttGTGAAGGCAGTGTAGGTTGGGTCAGAGGTTGTCTTCTGGGATTTGGGGCTTGTGTTCAGTTGTGAAGTATATAACAATTTACAGTCAATTTCATGATGTATGTGAACCAGAAGAAAATGACAGTTTTTTAAAATATGTGTGTTGTATTTATCTGTGCATTTTCTGTGTCCCTTTTGCATGTCTTCAAGTGCATCTTAAGATTTCTAGAGGTTTGTAAAAATCAAGACTACACTAAAATAATAATTGTTGAACCACTTAAATGATCCTACTGGATTCAAGGGATTGTTGTCCAACCATACATACATAATATATTCAATGCATTTAGCGCTCTCGGTACAGTCTTCAGAACAGGGGACAAGGGATTGATAGGGCTTTAGGTTTAGGTCTTTGACAAAATCCATCACTTCACAATATAAGACATTGCCATAATCACGGTTATCATTGTTTTAGACACCCATATGATTTGTGTAACATTATCTATATAATAGGGACATAATTATCTGCTTCAGTATCCAGAGAATGTTATGACACTGACAATGTTACTGTTTATACCGTTAAGTGTGTCTTCTATTAGTAAAATAGAAGACACAAACACATGGTTTAcaggcacgtgcacacacacaggcacccacacacaagtacacacacatttAAGTGTTTACATATGTCACAATGGAGTGTGCTTGTGAATGGTCTTGAGCTGCCtctgctggaagaaacaggtgaGCTAGCTAGAGAACAGATTGTAGTACACTAGTATAAAGGATGGCTATGCATGATGCCTGCCATGTGTAAAACTCCAAAGATCAGAGGGAAATAATTTCCTCCTTGTCAGGAATAGAAATAAAAGGTTTTGGCAGACCCCCAAAAGAGGGAtgtggctatgtgtgtgtgtatagtggtgcaTGAGTGTGACATTGGGGCGTGTTGTTGTATGTACTGAATGAGATGCATGTGAGGTCCATGTATGACCTAAATAGTACAATAGGGTCAGCACGCCCACTTTAGAAAGTGCAAGCGTAAACACCCTCTTAGCCCTGAGCTAAGTGCAGTGTGAACGCGGCttatttgcgtgtgtgtgtgtgtatatatatatggtttGAGGGTCATAGATTGTGTGAACATCAAAAAGGATGTAAAAACAAGTTTGCAATATTTAATTGGAGGAATAGGTTCAACTTAAAATATTTTTCCCTTCTTTTTGTTCTTTTCCCTTCTCCTTGACCTTCATCTCAAACACCTGCTCCATCTCTGTTTCCATCTTCTTCATCTTCATGACATGTTCCCTCCGCTCCTCCTCCATTGCAAGTTACGGCAGCAAGCTTTTTGCTGCGGTAGTTCTCATAGTGGACGTTGTTGGTCACATCCTTCAGATCTTGCATATGGGTCctGATCAGCATGTTCCGTAACACAGTGAAGTCACAGTGCTCCCCGTTCTCCACTTCTGCCACGCCCCAGGGGTACTGACGACCTCTGACCTTCTTGCCGTTCACTTCAATCACCACGTTGCTGCCAACCACTGCCAGAGGCATCCGCTCCTTGATCTTCCGGATGAGCTTGCTGTCCTCATCGTCCTCGGTGTCAGGAAACTCATAGATTCTGATCTTGTGTTCTTGGATTTCCTTCATGATctgtttCTTGAACAGCTGGCATTCTTCAGGTGTCAGAGTGTCTGCCTTGGCGATTAGAGGGATCACGTTGACCTTGTCATGGAGACGCTTCATGAACTCAATGTCCAGGGGCTTCAGCCTTCCGTGGCCAGAGGGGGCGATGAAGTACAGGCAGCAGTGAACTCTGTTGTCTGGCATCAGTCGTCGGTTCACCCTGGACTCTGCATTCAGGAAGTCCTCACACTTACTGTCAATGAAGTTAATGACAGGCTGCCAGCAGTTACTATTGTCCACTGCATCTCCAAACCCTGGCGTATCGACGATGGTGAGAGTGAGCTGGACACCCCCTTCCTTCACCAGAACCTTGGACTGCTCCACctGCACAGTCTTCTTGATCCGTAGGGATGGGCCAGGGTAATCCTTGGAGTACAGGTCAGTCAGGAAGAGGGAGTTGATGAGCGTGGATTTCCCCAATCCAGACTCACAACAACCATTAGTGTGAACTCAAAGCCCCTCTTCACTGACTTCCTGTACACTTGGTTGGGGAGGTTGGCGAACCCCACATACCCCTCCAGATTCCTAAGTCGTATCATATCCATCATATCCATCATCTGAGAGACGTCGTCATGGAGATAGTGGATCTCACACCAGATGACAGCCAACGCGTTCCCAAGTTGTGTGTTCTCCTTCTCTTGAGTACCGTatttctccattcctccctctgcctgctctaatctcatcctctctctctccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197469 lncRNA downstream 18920 66258687 ~ 66258901 (-) True G173636
TU197448 lncRNA downstream 20859 66254806 ~ 66256962 (-) True G173619
TU197446 lncRNA downstream 20902 66254806 ~ 66256919 (-) False G173619
TU197430 lncRNA downstream 58658 66215739 ~ 66219163 (-) True si:dkeyp-50b9.1
TU197375 lncRNA downstream 87055 66187646 ~ 66190766 (-) False G173570
TU197484 lncRNA upstream 2189 66300503 ~ 66300721 (-) True G173651
TU197515 lncRNA upstream 35599 66333913 ~ 66334944 (-) True G173676
TU197518 lncRNA upstream 43783 66342097 ~ 66342307 (-) True G173679
TU197519 lncRNA upstream 60610 66358924 ~ 66359445 (-) True G173680
TU197530 lncRNA upstream 74825 66373139 ~ 66373747 (-) True G173690
XM_021568786.2 mRNA downstream 54471 66210436 ~ 66223350 (-) False si:dkeyp-50b9.1
XR_002469227.2 mRNA downstream 131552 66144846 ~ 66146269 (-) True LOC110494064
XM_021568721.2 mRNA downstream 159108 66084226 ~ 66118713 (-) True znrf1
XM_021568680.2 mRNA downstream 207839 66032023 ~ 66069982 (-) True snrkb
XM_021568612.2 mRNA downstream 448081 65821657 ~ 65829740 (-) True usb1
XM_021569030.2 mRNA upstream 45316 66343630 ~ 66354538 (-) True LOC110494195
XR_002469252.2 mRNA upstream 283806 66582120 ~ 66586583 (-) False LOC110494316
XR_002469253.2 mRNA upstream 283806 66582120 ~ 66586583 (-) False LOC110494316
XR_002469254.2 mRNA upstream 283806 66582120 ~ 66586583 (-) False LOC110494316
XR_002469258.2 mRNA upstream 283806 66582120 ~ 66586583 (-) False LOC110494316
TU197229 other downstream 355592 65921850 ~ 65922229 (-) True G173431
TU197163 other downstream 438747 65833341 ~ 65839074 (-) False G173370
TU197164 other downstream 438747 65833341 ~ 65839074 (-) True G173370
TU196937 other downstream 741040 65534471 ~ 65536781 (-) False zcchc14
TU197514 other upstream 37098 66335412 ~ 66338386 (-) True G173675
TU197536 other upstream 76912 66375226 ~ 66390766 (-) True G173696
TU198454 other upstream 394094 66692408 ~ 66692850 (-) True G174505
TU201626 other upstream 3292821 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 3395295 69693609 ~ 69704399 (-) True LOC110494902

Expression Profile