RNA id: TU197456


Basic Information

Item Value
RNA id TU197456
length 1865
lncRNA type read_through
GC content 0.35
exon number 4
gene id LOC110494122
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66277821 ~ 66299637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAGCATAACCTTCTCATCTTTAATATTAATAATGTACAGTTAGAGAGAACAGATGATAATAAAATGAAGAACAGAATAAAGCTGAAGAGTGtagatatatataaaaaataaaaataaaaaaacaactccTAAAGTTATGGCTACCTTCAACATTATTAGATAGGGGAGTGGTTAAAGAATGATTTAGGAAAAGTTTGTCTCAGACCTTAGCTCAAATGAGCCTTTAAGACTTCTCAGACCACGGACTAACTTCTGACTATTACAACTCAGAGACCTGCAACAAGAGACTGGTCCTGAGAAAGCATACAGTTGGCATAGagtattattgtgtgtgtgagtgtggcttGTGAAGGCAGTGTAGGTTGGGTCAGAGGTTGTCTTCTGGGATTTGGGGCTTGTGTTCAGTTGTGAAGTATATAACAATTTACAGTCAATTTCATGATGTATGTGAACCAGAAGAAAATGACAGTTTTTTAAAATATGTGTGTTGTATTTATCTGTGCATTTTCTGTGTCCCTTTTGCATGTCTTCAAGTGCATCTTAAGATTTCTAGAGGTTTGTAAAAATCAAGACTACACTAAAATAATAATTGTTGAACCACTTAAATGATCCTACTGGATTCAAGGGATTGTTGTCCAACCATACATACATAATATATTCAATGCATTTAGCGCTCTCGGTACAGTCTTCAGAACAGGGGACAAGGGATTGATAGGGCTTTAGGTTTAGGTCTTTGACAAAATCCATCACTTCACAATATAAGACATTGCCATAATCACGGTTATCATTGTTTTAGACACCCATATGATTTGTGTAACATTATCTATATAATAGGGACATAATTATCTGCTTCAGTATCCAGAGAATGTTATGACACTGACAATGTTACTGTTTATACCGTTAAGTGTGTCTTCTATTAGTAAAATAGAAGACACAAACACATGGTTTAcaggcacgtgcacacacacaggcacccacacacaagtacacacacatttAAGTGTTTACATATGTCACAATGGAGTGTGCTTGTGAATGGTCTTGAGCTGCCtctgctggaagaaacaggtgaGCTAGCTAGAGAACAGATTGTAGTACACTAGTATAAAGGATGGCTATGCATGATGCCTGCCATGTGTAAAACTCCAAAGATCAGAGGGAAATAATTTCCTCCTTGTCAGGAATAGAAATAAAAGGTTTTGGCAGACCCCCAAAAGAGGGAtgtggctatgtgtgtgtgtatagtggtgcaTGAGTGTGACATTGGGGCGTGTTGTTGTATGTACTGAATGAGATGCATGTGAGGTCCATGTATGACCTAAATAGTACAATAGGGTCAGCACGCCCACTTTAGAAAGTGCAAGCGTAAACACCCTCTTAGCCCTGAGCTAAGTGCAGTGTGAACGCGGCttatttgcgtgtgtgtgtgtgtatatatatatggtttGAGGGTCATAGATTGTGTGAACATCAAAAAGGATGTAAAAACAAGTTTGCAATATTTAATTGGAGGAATAGGTTCAACTTAAAATATTTTTCCCTTCTTTTTGTTCTTTTCCATggtAGAAGCGTCAAGTTTCTGCTGCTCCAGTATACGTTGCTGTGCCTCCCAGTTTGACTTCTCTTCCTCATGGTGACGCCGCTTCTCCTCCAGTTCTTTATACTGAACCTCCAAGTTCTTTTTCATCTGCTCGTGGCGTCGCTCCAGCTGAGAAGGGAGGCAAATGTGTTACTTGTGAATaaaacagacagatacacacatccAAATTGACTTGAGGCTCTACCTCTCCTGTccttattagaggtcgaccgactatggtttttcaacgccgataccgattattgggagGACCaataaaagcc

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0060326 cell chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197469 lncRNA downstream 37119 66258687 ~ 66258901 (-) True G173636
TU197448 lncRNA downstream 39058 66254806 ~ 66256962 (-) True G173619
TU197446 lncRNA downstream 39101 66254806 ~ 66256919 (-) False G173619
TU197430 lncRNA downstream 76857 66215739 ~ 66219163 (-) True si:dkeyp-50b9.1
TU197382 lncRNA downstream 105254 66187646 ~ 66190766 (-) True G173570
TU197484 lncRNA upstream 2189 66300503 ~ 66300721 (-) True G173651
TU197515 lncRNA upstream 35599 66333913 ~ 66334944 (-) True G173676
TU197518 lncRNA upstream 43783 66342097 ~ 66342307 (-) True G173679
TU197519 lncRNA upstream 60610 66358924 ~ 66359445 (-) True G173680
TU197530 lncRNA upstream 74825 66373139 ~ 66373747 (-) True G173690
XM_021568786.2 mRNA downstream 72670 66210436 ~ 66223350 (-) False si:dkeyp-50b9.1
XR_002469227.2 mRNA downstream 149751 66144846 ~ 66146269 (-) True LOC110494064
XM_021568721.2 mRNA downstream 177307 66084226 ~ 66118713 (-) True znrf1
XM_021568680.2 mRNA downstream 226038 66032023 ~ 66069982 (-) True snrkb
XM_021568612.2 mRNA downstream 466280 65821657 ~ 65829740 (-) True usb1
XM_021569030.2 mRNA upstream 45316 66343630 ~ 66354538 (-) True LOC110494195
XR_002469252.2 mRNA upstream 283806 66582120 ~ 66586583 (-) False LOC110494316
XR_002469253.2 mRNA upstream 283806 66582120 ~ 66586583 (-) False LOC110494316
XR_002469254.2 mRNA upstream 283806 66582120 ~ 66586583 (-) False LOC110494316
XR_002469258.2 mRNA upstream 283806 66582120 ~ 66586583 (-) False LOC110494316
TU197229 other downstream 373791 65921850 ~ 65922229 (-) True G173431
TU197163 other downstream 456946 65833341 ~ 65839074 (-) False G173370
TU197164 other downstream 456946 65833341 ~ 65839074 (-) True G173370
TU196939 other downstream 759239 65534471 ~ 65536781 (-) False zcchc14
TU197514 other upstream 37098 66335412 ~ 66338386 (-) True G173675
TU197536 other upstream 76912 66375226 ~ 66390766 (-) True G173696
TU198454 other upstream 394094 66692408 ~ 66692850 (-) True G174505
TU201626 other upstream 3292821 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 3395295 69693609 ~ 69704399 (-) True LOC110494902

Expression Profile