RNA id: XM_036953618.1


Basic Information

Item Value
RNA id XM_036953618.1
length 4567
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC110494127
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66305919 ~ 66332389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCACTGACGCACTTCCAAAGACCCGCTGAAATTCAAAGTGTATTTGAAAAGGCGTCAAATGAACAGCCGTACGAATCTTTTCGCAGTTTATGCTCAGTTGTGACTTGTTTGCGTGACCTACACGGACACTTCTGTTGAGGAAGATCATGGATGGGGAATTTCGAAATGGGTTGGCGACAGCTTTGAAGAGACATAGAGACCCTTTGTCTGACACGGAAGACAATGTCCACTCGTCTGATGTCAATGATGTTCAGAAAAGGCGTCGCCTGGAGGTGTTGGGCGAGGAGAATGTCAGCCCTACAAAGAAGTCTTCAACTAGAGATCGCCTCCGGTGTGCAGAGCTGGTGAAGCCTGACACCCCTGCAATCTGCTCtgtccgctccagagtacagcaACTAACCCAGAGACGTGAGGGAGGGCATGTGCTGGCTCAGAGATGCCTCTCTGATCCAGGGTCTGGGGTACCATCCATTAAATTCCAGGATGGATTCAAAGAGCACCATCTTATTGGTGAGGCAGAATTCAGCTCGCGGGTGGAGCGGTTTAAATCCCCCACCACTCCTCAGGCCAGCCCCCTGCCAGCCAACCGGTGGCCCCGTACCCTCTCCAACGCTGTTACCAACTTACAACTGAAACTCGAGGCCAGTGACACGCCCAGCTCCAAACAAGCCTCCCGAATACGCCAGgagagggaggaggagctgCGTCTTGTAAGGGCCCAGCCAATCACAGAGAATGTCTTCCTAAAGCGAAGCTTCTCTGATTCCTCACTGACTGAGAGGGCGACCCCACCCGTCTCCTCATTCTCCCCTTGGATGATGTTTAGACGTAGCAGGAGACTGCAGTGGCCACCGTTCCAACCATGGAATCAGGCAGACCTCAATGTGACTGATGAACCTTTTGGGGTGAAGGACGGCAGCTTTACCGAGACATCTGTCTTCACTAAGGTCGATGGAGTGGAGCCTCCAATTCAAGACACCGATAATCCTGTGGCAATGGAGTCAAAAGGAGATGACCCTGAGCTGAGCTCTCGCGATGAAACCAACACCGCTGAGATGATTGACCTAATGTTTGATGAGGTGCTGGAGGCTGCTGCCCAGGGAAGGATGGAAGAGGACACTGAGGATCACAATAGTGGCATAGCCACAGCGATGCGTGGAATAGAGGAAACAGACACAGAATTGGACAAAGCTGAGGAGGGTGAAGACCTGGAAGAAACCAAGGAACTGGACTCCAGTGCAGATGAGCTGCTGTCCTTCCCACCCAGCTttatcctctcccctctcagcaaGTCTGTGGAAGCTGTGGTCACTCCTATGAGACTTGCAGCCAATCAGCTAGCCAACCCTCCATCCCTACTTCTGACTCCTGAAGAGCTGACCACTCCCCCTGCTGATAGTGCCCCTCTCTACAGCATCGATGCCTACCGCACCCAGAGACAGAGCACCAAGCCAGCCATTCAGAGTGTAACCCCAAGGGTGCAGAGGCATGCCGCTGAGAAGTCTCATCCCCAACACTGTGTCAACACCAAGGAAAGGATCATGGTTCTGAATGAGGATGCTGCCAAGCTGCAGATGGTCATCAAACAGACGTTGCAGGCCCTGAGCTGCTGCACTGACGAGGACCACGGCAGGGGCTCCCTGGAGGAGGCAGAGGCTGATAAACTGCTGCTCGTCTCCTGTGAGAAGCGGGCAGCCCTGCTGGCTGAGGTGGCCAGGCTGAAGGAGAAGGGGGGCTCAGTCTCTGAGGATCTAGAGGGGGGTGATGGTGAGGGGGACTCCGGCATGTCCCAGCAGCCCTGCAGGGGCACCGTCAGCATCAGCCGTGTTCAGCTCCCTCTCAAGGTGGAGTTTGTCTGCTCTGCCCGCACACAAACAGGTCGGCCCACTCATTATTTCTTTGTCCTGATTCGTTATGGACCCTGCAACATCGTTGCGACCCCATTGGCCACGGCAGTGGACGCCCAGAATGGCGACACCATCTCCTTCCCCACCTCCATCACCCTGCAGGACATTCGCTCCAACTTTGAGATTGATGTGGAGGTCTACAGCCTGTCCCACACCTCAGGGAACACCTGCAATGTGGATCTCCGCAGCTCCACCAAGTCACGGgtcACTCCAAGGAAGCTTCTAAGCACCATCAAGAGATCCAACCAAAATGTAACATCTTCTACCATGCCGCCCCTAAACACCCAGCGCACCAGCAACTTTTCTCTGGTTGGTTCTCACAAGATCTCCCTGGCCTCCCTGGGCCAGAGCAAGTTCCCCCTGGACAAGGTGCCCTTCCTGTCTCCACTAGAGGGAAACATATACCTGCAACTGGACAGCGAGAGCCACTCTAATGTCCAGCACCAGGGCTTCCTTACAATGTTTGAGGTGGTGAATGGATTTGGAGCTTGGCATCGACGCTTCTTTGTCCTGGAGGGAAGCCACATGTCCTATTGGAACCACCCCAATGACAGAGGCAGCAAGGCAGCAGAAGGCAGCATCTCCCTGTCTAGTTCCTCTAGTCAGAGTGTAAAGCCAGTGATGAGAGACTCCTGTGCTCGCCCCTATACTTTTGAACTGGTCAGCAGCGTCCAGACTGCACAACAGGATGACCAGGGCGCTCTGGCCAAGTGCTGGTTCTCAGCAGATACTGGGGAGGATCGAGGGGACTGGATGGAGAACCTGAACCAGGTTCTCCTGGACCTGCATACCTGGACTCGCTGCACCCCTGAACCATGCTAAATCACAGCCCAACAACCAGGCCAGCTGTGGGAACATGAGGGACAGCAGTCTGTAACACACTGTTATAATCATATCTTTATGAATACTTATGATTACCATTGGGAGATTATTTTAGACTTGGGGATATTTTGACTTTCCTTCTATTTGTCACTTTCAATAGCCATTTAAAATAGAGCTCCATCTTGTTGCTTGATATGTATACTATTTACCTGAGCTTGAAGTAGATGATTTAAATGAATCCATATAATCTACAAACACTATTAAATACGTATCAAACCTAGTGTAGAAGAGCACTAACACTAAACACATGATTAGTCCAATAGTGTAGTTATAATTTCATAAGACTAACAGAAAAATGCCAGACATGGCTGTTAGACAATATGATTTCACTACTACAGCATTGCTGTAATACCCTCAAGTGTAGAAATATGTCTCTCGGAAATAAGAAATCTGTACCTGACACACAACCTACCTAATCTAGAAACTTGTGAATTTAGTGATTCAACTAGAATTGCAGTCAAGTTGAGTTATAGTACTGTACTTGAAAAACTGAGCTATCTGCTACAAGGTAAATATGGACTATTTCACAAGTTAAATTCTTCATGTTCCTTAACTGAATCTATTGCTGTGTTGTGCATAACACAACATGGGCCTGTCAACAAAGATGGTACCCAAGCACTTCAACTGGACTATAGAATGATAAGGTGTATAATGTTAGTGCTTCATCTCATGATAAATCCTAGTAGCAGCCTAAAAGGTGGTGAATGTATATGCTGACTGTAGTCAAcctagttttttttgtttttccttcATCTATTTACTGTCAATCGGTCATTCTCTTTCTGTATGTGGATGTTATCCCTATAAAATACCTGTCAACATTCTTTATATGCACATGATTGATGAAGGTACTACCAGTAAATAATACAAATGGGTCTAATGGCATACACTCTCTGAATTTGTTTTCAGTCCATGCAGTTTGTCATGTTCTTCTGTAAATTTGATATGGAAAATATTTGCAATGTTTTTGGTGCATGTGCAATTTGAGTTTATAAAACCATAAGCTCAAATATAGCTTTCATTGTCCTCTGTCTTAAAGCTGACATCTTCCTCCATAATATAGTTATGGCAATATTAGCATATGAAAGAGTGAGCGATACAGTGTTTACAACATTGTAAAGTATTGAGGGAATGGGGTTGGCTATGGAGCAGGAACTCGGGTCAGGAATGTCATACAGGAAGTCATGCCTGTGTTTGATGTGTACTGCTACAGAAAGAGAATTCCTGGAGCCCTTTTGGGGGGAGGTGGGGCAGTTGGTTCTCAGCTCAAGGTGATGATTGGAAGAGTGGCCCAACTGTACATCCCAGGGCTCATGCCTCAGTGTCGTGTTCAGCCAGAACACTGGGCAGAGTCTGGTAAATGACACCATAGTCCCTATTTAGTgtattatgggccctggtctaaagtagagcactttaaagggaatagaaTGCCCTTCTGAATACATACTGGGCCTATAGCTAGCAGGACATTGATATGAGTGGTGAGATGCCCAGGGACGAGGCCAATGTTATAGGGGAAGTAATGAAAGACCGGTGTCTTTAGTGATCGGGGTGGTCCGTGAGATACAGTAAGAACAATGGGGCACTGGTCTCACCCTAAGAGGAACTAATATAACATCCTCTCCCCAATCTGTAACTGTCATTCCTGGTAAACTTGTCTCAGTCTCTATTGTTAGATACTGTACCCTCAACCCGTTATGGTACTTGGCATATGAACCCCtaaagacatgttaccagagtCTTTACATCTAATAAACCAATTGACCGTTTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196352 lncRNA upstream 306355 65998895 ~ 65999564 (+) True LOC110494008
TU196370 lncRNA upstream 334961 65965873 ~ 65970958 (+) True G172658
TU196342 lncRNA upstream 376240 65929364 ~ 65929679 (+) True G172637
TU196335 lncRNA upstream 386701 65918913 ~ 65919218 (+) True G172630
TU196296 lncRNA upstream 435651 65869329 ~ 65870268 (+) True G172592
TU196314 lncRNA downstream 27608 66359997 ~ 66363470 (+) True LOC110494202
TU197656 lncRNA downstream 197726 66530115 ~ 66530338 (+) True G173804
TU197657 lncRNA downstream 198063 66530452 ~ 66530710 (+) True G173805
TU197658 lncRNA downstream 199277 66531666 ~ 66531887 (+) True G173806
TU197660 lncRNA downstream 201069 66533458 ~ 66533659 (+) True G173808
XM_021568868.2 mRNA upstream 7605 66266850 ~ 66298314 (+) False LOC110494104
XM_021568859.2 mRNA upstream 7605 66266925 ~ 66298314 (+) False LOC110494104
XM_021568829.2 mRNA upstream 7605 66277848 ~ 66298314 (+) False LOC110494104
XM_021568850.2 mRNA upstream 7605 66277848 ~ 66298314 (+) True LOC110494104
XM_021568818.2 mRNA upstream 39895 66262594 ~ 66266024 (+) False LOC110494096
XR_002469234.2 mRNA downstream 2123 66334512 ~ 66338446 (+) True LOC110494179
XM_036934652.1 mRNA downstream 6482 66338871 ~ 66340622 (+) True LOC118937288
XM_021569009.2 mRNA downstream 22018 66354407 ~ 66357907 (+) False LOC110494184
XM_021569017.2 mRNA downstream 22018 66354407 ~ 66357907 (+) False LOC110494184
XM_036953672.1 mRNA downstream 22098 66354487 ~ 66357907 (+) True LOC110494184
TU196564 other upstream 39896 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 369786 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 664943 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 664943 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 769132 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 409431 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 623135 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 906501 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 1153774 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2528449 68860838 ~ 68861368 (+) True G176612

Expression Profile