RNA id: XM_036934652.1


Basic Information

Item Value
RNA id XM_036934652.1
length 1357
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118937288
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66338871 ~ 66340622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTGCACACTTCTGCGAGTTGTGGAAGCTGTCTTGTTTCTTACCCTGTACGTAAACCACAATCTGTCTATCTCATAGAATGAGAAGTACTACTAGGATATTAATGCTGCTGTGAGCAGAGTGAAGGCATGGTGAGAGTCATAATTCTGGATTTTGGCACTGGAACAGGACTGCTTTCCATGATGGCTGTCACAGCTGGTGCTGGCTACTGCCATGCTGTGGAGGTTTTCAAGCCCATGGCAGATGCTGCTCTCCGAACAGTGAAGATAAATGGCTTCTCCGACAATTTCAAGATCATCAATACACAAGTGACAGTTCGACCAAATGGAGACATGCAGACTCGAGCCAACGTCCTCGTCACAGAGCTGTTTGACACAGAACTGATTGGAGAGGGAGCCTTACCCAGCTATGAATAAGCTCATTTGGCCCCCGAGTGGCTCAGCGggctaaggcattgcatctcagtgctagaggcgtcactacagaccctggttcgattccaggctgtatcacaaccggccgtaattgggggagtcccatagggtggcgcacaattggcccagcgttgttaggGTTTGCCCGGTGTTGTTAGGGTTTtcccggggtaggtcgtcattgtaaataagagttgttttcttaactgacttgcctagttaaatacaaataacattttacatttggtccaggtaagtgtgtttgtgtgtaagaggCAAAGAAAGAGGCAGATATGTATTTCTCCTGCAGGAGGGCTGTGCCCACTAGTTCCACGGTGTATACCCAGCTGGTGGAGTCAGAGCAGTTGTGGAgctatttttactttgtcatgcTCTTATTTGTATGTTTACATGCCTATTATTATGTGAAATTATTCCAACACAGCCACACAATAAGTTATATCTGTCTGTATCCATCCAGGTGTTCAGTTTGGTAAACTGCAATGTTGAAGCAGGTCTTTGAACAAGTGAGTGGAATCATGTAAATAAAGCATTAATTTAGTTGAAATATATTAGCAAACCCTCAATGACTACAGGGTTGCTAGTTGCTAAGGCGTGTATCTCTGTAGGTGCTGGATGCCAACTGCATAAGGGGAGAAGCTTTTCGAGCTGAAAGACGATGGCCAGAGTTTACCCATGATGTTGCACAACGATTTAAATCAAGTCATCgttttagtcaaagtatgataTATTTGGGCATGAAGTGACAAATCCTGAGCTGCCCACTTTTTGCAAATCTATATGAATACGGTGTCTTTTCCTATGTTATGATGTAGACATTATTTTAAGCCTACGTTTCGTTTCAGGACTGGGTTTTGTTTTAATGTTACCACtcaccagcatggcattgtttattaaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196352 lncRNA upstream 339307 65998895 ~ 65999564 (+) True LOC110494008
TU196370 lncRNA upstream 367913 65965873 ~ 65970958 (+) True G172658
TU196342 lncRNA upstream 409192 65929364 ~ 65929679 (+) True G172637
TU196335 lncRNA upstream 419653 65918913 ~ 65919218 (+) True G172630
TU196296 lncRNA upstream 468603 65869329 ~ 65870268 (+) True G172592
TU196314 lncRNA downstream 19375 66359997 ~ 66363470 (+) True LOC110494202
TU197656 lncRNA downstream 189493 66530115 ~ 66530338 (+) True G173804
TU197657 lncRNA downstream 189830 66530452 ~ 66530710 (+) True G173805
TU197658 lncRNA downstream 191044 66531666 ~ 66531887 (+) True G173806
TU197660 lncRNA downstream 192836 66533458 ~ 66533659 (+) True G173808
XR_002469234.2 mRNA upstream 425 66334512 ~ 66338446 (+) True LOC110494179
XM_036953597.1 mRNA upstream 6482 66305919 ~ 66332389 (+) False LOC110494127
XM_021569009.2 mRNA downstream 13785 66354407 ~ 66357907 (+) False LOC110494184
XM_021569017.2 mRNA downstream 13785 66354407 ~ 66357907 (+) False LOC110494184
XM_036953672.1 mRNA downstream 13865 66354487 ~ 66357907 (+) True LOC110494184
LOC110494202 mRNA downstream 19181 66359803 ~ 66363985 (+) False LOC110494202
XM_036953676.1 mRNA downstream 29168 66369790 ~ 66374755 (+) False LOC110494222
TU196564 other upstream 72848 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 402738 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 697895 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 697895 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 802084 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 401198 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 614902 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 898268 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 1145541 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2520216 68860838 ~ 68861368 (+) True G176612

Expression Profile