RNA id: XM_036953681.1


Basic Information

Item Value
RNA id XM_036953681.1
length 2090
RNA type mRNA
GC content 0.47
exon number 7
gene id adat1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66434480 ~ 66460877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGAGCATGTCTTGTGTGCAAATAAGAATGTGTGTAATGCAATGAATATTGGCTGTATCGTTGAAATACATATACAAGAGAGACTACGAATAACCGTGTTTTATTCACTTTACGTACCTTCACAACAGGCTGCTGCCACCATAGTTAACCAGATAGCTAGTTTGTTTAAAACTCGCTGCAATATGTGGACCGCCGATGAGATTTCCAAACTGTGCTACCAGCGCTTTAGCGAGTTGCCCAAGAGAGGAAAGCCCGAGCCGGGCAGAGAGTGGACGCTTTTGGCCGCCGTAGTAAAGTGTTCAGTGTCCCCGAATCAAGAGAAAGTTGAGGAGGTAGTGTCATTGGGAACTGGCACTAAGTGTATTGGGCGCTCAGCCATGAGCTCAAAGGGAGATGTGCTCAATGACAGCCATGCAGAAGTCATTGCCAGGAGGGGTTGCATTAGGTATCTGACTGAGCAGCTGCGGATGGCAGTATGTGGGCAAGGCAGCACTGTGTTCTgtcagggagaggagatgggaaagTGGAAGGTGCAGTCAGGGGTGTCTTTCCTGTTCTTCACAAGTCACACACCATGTGGAGATGCCTCCATCATTCCCATGATGATTGACCGCCAATCCCAACCCTGCCCACCAATAAGGTCAGATGAGATCATCCCCAATGGAACCAATGAAAAAGCAGAAAGACTGAACCCGAAACGCAGAGCGGAGACACAGACTGATGGGATCAATAAGCATCCTCGATTAGAAGAACCGGAGAAGTCACAGTATGAGCTACAGTGTGGTGGGAGCCTGGTTGAAAATCTTACTGACAGCCCTGCACAGGCCCATGCAGAGAGTCCAAGGCCGGAGGGGAAGAACGCTCTGACCAACGTGGTGTTAAGACAAAGGGACAATGTTTTGACACAACAGTCTCTACAGGACATACACCGGACAGGTGCTAAGTGTGTCCCTGGAGGACCAGAGGATCCCCTCCAGCCCGGGTTAGGGTACCACAGTACTGGGCTGCTGAGAGTGAAGCCTGGTAGGGGGGagcccactctgtctctctcctgcagTGACAAGCTGGCCAGGTGGGCAGTGCTAGGTTTCCAGGGTGCGCTGCTCTCCCATTACCTACAGGGGGCAGTCTACTTCAGCGCAATAGTGGTGGGGAGATGTCCATACAGCCATCAGGCCATGCAGAGAGCTCTGATCACCAGGTGTTCTGAGGTGACAGCCCTGCCTGCTGGCTACACAGTGCAGCCTCCAGAGCTTCTGCAGTCCAGCCTGGAGTTTGCTCACAGCCAGGCACAGACTGAGCACAATCATCAGCCCGGCAAGGGCAGAGTCTCACCTTGTGGCGCAGATTGTATTTGGAACCCCATCGCCCCCGTTGCCTCGATGAATTGGTTTGACCTCTCTTTTTTGTTCAGTGCTTTTAGAAAGCATTAGTTACACCACTGGTGTTTTTAAAATGAAAAGGCACCTGCAAAATAATTGTATCTGTTTTGTTGTGCTGTTAGATTTGTGTCATTATTTCATGTCCGATGGTGTTGGTCCAATGGTGTTGTTAGATATAATTTGAGCTGCGTGTACCATAAGGGAATTCATTATAATCTTACTTTGCTTGTAAGAACCATGATGCGCAATGGCATGTCTGATTAGGCTTTGCTGTAGGGCAGACTCTGTGTAGCCTTCCATCAGCCTACCAAAGGTTGCACCTTAGCAAACAACTGCATGTCCGGTAGCTCGCAGACTGTCAATGAGTAGCTCGCAAGTAGATAAGTGAGAAATAATCAGTAGGCCTTATATTACATGATTAAATGTTTTCAAAAATCATCCTCCCCAGGCTGTTTACAGGCAATTAACACCATTCTGCAATTTTGCCATATACTTTCAGTTACAtattgggatattatttttgacggtacagtgcattcggaaagtattcagaccccttgactatttctACATTTTAGTacttttacagccttattctaaaatgaattaaattctTGTTTTTTTGTTCTCACCAATCTATACAAAATAccccatgacaaagcaaaatggtttttatttattttttgctaatttataaaaatgacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196314 lncRNA upstream 71010 66359997 ~ 66363470 (+) True LOC110494202
TU196352 lncRNA upstream 434916 65998895 ~ 65999564 (+) True LOC110494008
TU196370 lncRNA upstream 463522 65965873 ~ 65970958 (+) True G172658
TU196342 lncRNA upstream 504801 65929364 ~ 65929679 (+) True G172637
TU196335 lncRNA upstream 515262 65918913 ~ 65919218 (+) True G172630
TU197656 lncRNA downstream 86815 66530115 ~ 66530338 (+) True G173804
TU197657 lncRNA downstream 87152 66530452 ~ 66530710 (+) True G173805
TU197658 lncRNA downstream 88366 66531666 ~ 66531887 (+) True G173806
TU197660 lncRNA downstream 90158 66533458 ~ 66533659 (+) True G173808
TU197700 lncRNA downstream 91914 66535214 ~ 66535447 (+) True G173835
XM_021569052.2 mRNA upstream 12143 66375132 ~ 66422337 (+) False LOC110494212
XM_021569080.2 mRNA upstream 12143 66375132 ~ 66422337 (+) False LOC110494212
XM_021569091.2 mRNA upstream 12143 66375132 ~ 66422337 (+) False LOC110494212
XM_021569069.2 mRNA upstream 12143 66375509 ~ 66422337 (+) False LOC110494212
XM_021569060.2 mRNA upstream 12143 66375873 ~ 66422337 (+) True LOC110494212
XM_036953684.1 mRNA downstream 30506 66473806 ~ 66495082 (+) False LOC110494247
XM_036953685.1 mRNA downstream 30514 66473814 ~ 66495082 (+) True LOC110494247
XM_021569184.2 mRNA downstream 53659 66496959 ~ 66507990 (+) True LOC110494252
XM_036953694.1 mRNA downstream 64942 66508242 ~ 66529561 (+) False LOC110494260
XM_021569205.2 mRNA downstream 64944 66508244 ~ 66529561 (+) False LOC110494260
TU196564 other upstream 168457 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 498347 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 793504 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 793504 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 897693 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 298520 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 512224 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 795590 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 1042863 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2417538 68860838 ~ 68861368 (+) True G176612

Expression Profile