RNA id: XM_036953684.1


Basic Information

Item Value
RNA id XM_036953684.1
length 3520
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC110494247
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66473806 ~ 66495082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCGCCCTGTAGCCTACTTTGATAGGATGGTGGGTTCAATATTTTGTGGGTTGGTTGGATGATGCTCTGGATGAGTGAGACAGGGGCGGAGCACAGCGGCTGTTGGGATACGCTGCAGTGGAGCCAAAAATCTGGGGAACCAGACTGTCAAACCTAAGGTTGATTGCGACACTGGCGTAAGGTTTCCGCCTCCTCTCCTTTCGGCACTGATTGAAATTCATGCAGATCAAAGATCGCTTTCGTTTACTGTTATGGTAACTCGCAGCTGCGGCAGTTGAGTTGGCGTGCTGTGGGGAAGGAAGGAACTCGGCGGGAACAGATAATGGCCTCCGAGCCGGCGGAGTAATGGGATCGGTCGCCTACCGCAGTCATGGCCAGATCAACAAACAGAAGCGCCAAGGATGGAGATTCCAGGGTGTCTGCTCCCACGGACCGGGCAGAGGCGCGGGACCTGAGCGACCCCAGAGAACTGTCTCTTGAAGAAGTGCTGAAATCCTACGAGCAGCCCATAAACGAGGAGCAGGCTTGGGCGATGTGTTATCAATGCTGTAGCTGGTTGAGAGTGCCGCGCCCGGCCACTGTGACTGGTGGAGTTTACAGGGTGAAGGGCCCGTCCTCTATACTCCTACTCAGGGATGGGACGGTTTCCCCAAAGCAAGAATCAGATGACACAGATGGACCTCCCCTTCCACCAATCACAGAGCGCCAGCTGGTTCAGTCTCTGGGCGTGGCCATCTACCAGGCCCTAGACTGGGGACTGGATGACAGTGAGGAGCGGGAGCTGAGTCCTCAGTTGGAGCGGCTCATTGAGCGCATGGCAGGAGGAAATCATAGCCTGCAGGCTGACTCCGGCGGTGGCAACGGAACAACAGATGAGGGCTACAGTggacaggaggaagaggaagaggagggagaaaagggggctATAAGACCAGTGTGTACATTCAGCCAGGTGATGACGCTGTGCACCTCCAGATTGGCAAACCCTGCTCTTGCTCCGGAGCACTACCAGGCTGTGTGCAGAGCCTTGTTCGTTGAGACTCTTGAGCTGCAAACCTTCCTGATCAAAATCCGAAATGCCAAGGAGATGCTGAAGAAGATCAATGGAGAGGATCCTCAGGAAGATCAAGCTGAGATCGatgcactgaaacacacagactgGACTCGTCTCTGGGTCCAGTTGATGAAGGAGCTGAGACAGGGGGTGAAACTGAAGAAGGTGCAGGAGCATGAGTTTGACACACTGCCCACTGAGTTCAGCCTCACTCCCTTTGAGATGCTCATGCAGGATATCCGCACCCGCAAGTTCCAGCTGCGGAAAGTCATGGAGGATGGTGACATCCCCACACGAGTGAAAAGAAATGCCCATGAGTTTATTTTGGACTTCATCAGGTCTCGCCCTCCACTGAAACCAGCGTCAGAGCGCAACCTGGCCCCTCCTCCTCAGGAGCAGCAGTCCCTTCACGAACGCGTCCTCGCTGAAATCAAACAGGAGCGCAAACTGAAGCCTGTGGACTCACCCGGCTCCAAGAGATCGTTTGGCTCCTTGCCCTGTCTGGCACCCACCTTCCCGTGTGATTTCAAATCTACTTCCTGCATTGACCTGTCAGTCTCAGAGCTTAGGTCCCGCCCCCCATCTCATCCTCGTGTTCTGCTCAAAGCTCCTACTCTtcaggagatggaggagatgagtATTTTGGagGATGAGGAGTCTCCAGGAGAGCTCTGCCGGGCTGAGAGTTTTCCCACATCCATGAAACGGGACCGCTCCTTCTCTGAACATGACCTGGCTGAGCTCAGGGGGGAGATTCTCCCCTCACTGTCCGAATCCGCCCATCTGGGAAGGGCTGTGTTGTGGAAGGGGGAGAGACCAcggtcacacacactctcaggggCTGGGCCACCCCCCACGCACAGAGGCTGGGTGCCCCTCTCCCCTGCCCGTATCTCTCTCAGCTCAGTGGATGAGACCACAGAAGGGGCAGAGACTGGCTCCAGCTCTCGGGGTGGCTATAAACCCAAGTGGATGGAGGAATTCAGTCACCCAGTGGAGAGTCTTGCCTTAACAGTCGATGAGGTCATCAATGTGCGTCGTGTGCTGGTGAAAGCAGAGATGGAGAAGTACCTCCAGAACAAGGAACTGTATTACAATCTGAGGAGAGGCAAGGTGTGCTGTTGCTGCAGAATTAAATTCCCCCTCTTTTCCTGGCCATCCACCTGCCTGCTCTGTAAAAGGTCTGTCTGTGGATCCTGTAGTGCAAAGGTATCCTACAGCCCCTTCCTCTTTGACAGTATGAAGATTCCTTCCAAGAAGATGGCCCACATCCCAGTCTACACTGTGGGCTTTCACAGCAGCCCAAAGAGCCATGGTCGCAAGAGTGAGGTTTACAAATCTTTGCGTACTCTCTCCCGCCGGTCTGTGGAGGAGGAGTTCCCCCACCTGTACGCCCATGGCTGCAGCCTGCGGGATGTCTGTGTGGACTGCACCAAGTTTGTGGCTGATGTCATCTCGTCCAGTCGCAAGAGCCTGGACATCCTCAACAACACTCCCAAGAGGGAGAGTGCTACGCCCAAGACACACCCCCAACCTCATGCGTCACCACATCCGCCCACCTTGAAGAGGAAGAACAAGTGAATAGATCCGACTGTTGGTTTTTCCTGCGCCTCCTTAACAGGGTTGCACCTGTGCTGCACGACTAGCCTACTCAAATACCCCACCATTCCCCCTAACCTGCAAGTATCCCCTCCTCCTGCTGAAGTGCTTGTTAAGGGTTGTTCCTCCCCCACTCCACTGTGGAGGTTCATAGGAGGATATGGCCTAGGAACAACAATAAGTCTGCCTCATCACAGCAGTGATTACTTCACTCACTGGTCTGATACACAGCTGAAACTGAGAGAGAGGACGTAAGGGAGAAGTGGAGGGCAAGCAGAGAAGGGAGGcaaaacagagggaggaggaaatgggtgagagaggaagaggtaagGATGATTGGAAAAAGGAGATGTATCTACTGTAGGAGCCAAGAGTTTGGTTTAGACTAAACATTTAGCTCCCTAGTTGCCTTGTTGTAGTTGTGAAACACCAAAATAACACATTTTAACTGTAAACGCACCTTGCCATGACACACCTTCTTAGAacactggattttttttcctggAATTTTAAAATAACACTATGGCAAGCTCAATAGAAGAGATATTTCACTATGACAATAGTTGTTGGAATGTGCTAGGATTGTCTGTGGTCCAACTTAATGATGCATGGTGACATTGTCTGTACGACTGTTTGAATGTAACCGGGTCTGagaggactagtaaaggtcaGTTCTGGGTAAAAGAGATCCTGAGAGAGACCATTCCTGTTGGCACCACACGGGACTGGACCCCAGCCGTCTATCTCTGCTGCTTCAGAATTACATTTaagccccctctctcaccctcgaTGGTCCTGTGAGATCTGCTCTAATTTTCTAAACACTAAGTAAACCTCAACTGCAATAAATCTAATGTAACCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196314 lncRNA upstream 110336 66359997 ~ 66363470 (+) True LOC110494202
TU196352 lncRNA upstream 474242 65998895 ~ 65999564 (+) True LOC110494008
TU196370 lncRNA upstream 502848 65965873 ~ 65970958 (+) True G172658
TU196342 lncRNA upstream 544127 65929364 ~ 65929679 (+) True G172637
TU196335 lncRNA upstream 554588 65918913 ~ 65919218 (+) True G172630
TU197656 lncRNA downstream 35033 66530115 ~ 66530338 (+) True G173804
TU197657 lncRNA downstream 35370 66530452 ~ 66530710 (+) True G173805
TU197658 lncRNA downstream 36584 66531666 ~ 66531887 (+) True G173806
TU197660 lncRNA downstream 38376 66533458 ~ 66533659 (+) True G173808
TU197700 lncRNA downstream 40132 66535214 ~ 66535447 (+) True G173835
XM_021569157.2 mRNA upstream 12929 66434480 ~ 66460877 (+) True adat1
XM_021569147.2 mRNA upstream 12930 66434480 ~ 66460876 (+) False adat1
XM_036953681.1 mRNA upstream 30506 66434480 ~ 66443300 (+) False adat1
XM_021569052.2 mRNA upstream 51469 66375132 ~ 66422337 (+) False LOC110494212
XM_021569184.2 mRNA downstream 1877 66496959 ~ 66507990 (+) True LOC110494252
XM_036953694.1 mRNA downstream 13160 66508242 ~ 66529561 (+) False LOC110494260
XM_021569205.2 mRNA downstream 13162 66508244 ~ 66529561 (+) False LOC110494260
XM_036953707.1 mRNA downstream 21339 66516421 ~ 66529561 (+) False LOC110494260
XM_021569214.2 mRNA downstream 21553 66516635 ~ 66529561 (+) True LOC110494260
TU196564 other upstream 207783 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 537673 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 832830 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 832830 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 937019 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 246738 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 460442 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 743808 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 991081 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2365756 68860838 ~ 68861368 (+) True G176612

Expression Profile