RNA id: XM_036953756.1


Basic Information

Item Value
RNA id XM_036953756.1
length 3304
RNA type mRNA
GC content 0.45
exon number 16
gene id vps9d1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66586399 ~ 66611590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTGACCGCAGTTGGCGCTGCGTTGCAATGAAGCCCCTTCAAAATGCCATGAAAATGGCTAAAGTGGCTATACAACTGGACGCGGGGAACCGACAAAAGCTGACTTTTTCTCTCTAGGAAGCTTACTGTGAATACTTGAGGAGTATCAATTTCATCTCCCACGCACTTCTGGAGGATGCTGAATCGAGGAaggaggaggagatggtagCAGTAGAGGTGGAAAAGATGTTGAGGCTAGCTGAGCAGTGTTTGGAGAGAGTCAAGTCCCTCGTAGGAAAGAGAGATGAaccccctacccctccctcttccaCCACCACACCAACCAACTCAGCAGCACTCAGCCTGACCACAGCCTTAGCCCCATCTGTTGCAGTAAACCCTGGAAAGATTGTTTTGCCACAACCACAAGAGAAGATTGACTCGGGGCCTAAATATAACCCCAGGCCTGGACACCGCAGAGTTCTCTCTGAGGGTGGAGGGGTGGTCTCCCTCTTCCTGCCCCCAGAAGTCTTCCAGAGGTTGCAGACAGTGGAGTCACAGGACACCAGGAAGGAGCTTACACCCATAGAGGAGGCATCACGGTTGAACCAGAAGTTGAAAGCAAATTGTGAAGCTCGTCTGGCCCGACTGCCCCCTGCTCAGGCCCGTACACAGAAGACTTCTCTGACTCTCTCTCTTCAGAGGCAGATGATGGAGAACCTGATTATTGCCAAGGCCAGGCAAGATGCACTCCAAAGGaagatggaggaaaggagactGAGGCTGCAGGAGGAGGCCAACAGGAGGTTTGCTGCGTCTGGAACAATTAATGGAGAAGAACAGGAACAACGTGTTCTGTACACAAATATTTTGGAATATGAACAAGATCATGACTGGCCCAAGCTTTGGAAAGCGAAACTCAAGAAAAATCCTGATGATGCCACCTTGGTCACCGGCCTTGTTTCATGTCTTCTCAGCTGTCCAGACCACCCTGTGATTAAGCTACTGAAAAGGCTCCAGTACAGAGTTTACAACAGGCTTTATCCAATCGTGAGCAAGAGTCTACCTGCAAGTCCTGCCCTGCCCATGAAACCCTCCCGCAGCACTCAGAGCTTGTTGATCTCAGACTCTCATCAGAACGTTTCAAAATCTGGCACAGGTCTGTCCTCCGATGCCTCTCTCAATATCTCCTCCTCCCATGACCATAATGCCAACGAGGCAGAGTTGGATAGTGATGGGCCCCATACTCTGGACAGGGAGAATTTGTTTGAGGATATGGAGCAGTTCCTGACACAGATGGACCGGGACCCCTCTCATAGGGACCCTGACATGATCTTTGAACCATCACAGTTAAATCAGGAGTTCCTCGTTCAGGACTTGGAGATGCATGCTCTCAAAAAGCACCTGAAGGCTATAGTGAAGGACATCCATATTGCCATTGATCaactgctgtctctgtgtctgctctCATTTGAGTGTCTGAACACAGCCAATTCTAAGGACCTGTGTGTGGCCAGCATAGAGGAAGCCTTCTTCACTCCCATCTGGAGCCCTCTGTTGACCCTCTTCAGGAAGGTCCACAGAGAGCGGGAGCTGTCCTTTGAGTCCAGTATGAGGCTGTATCAGGACGCCTCACCTGGTGACGTTGGTGTCGCATCGAAACTGTACCCCCAAGACCATGTTGTGCTGCATGGTTCCTACCCCTATGAATCAGCAGTGCAGGAGCTTCGCTTGCTGTGCAGAGATTGCTGTCCCCAGAAAAAGCTGGAGTGCATTGTTCGGACATTGCGTCTGATCTGTGCTTGTGCTGAGGACTACTGCTGCCTTCATGAGGCGGATTCCAAAACAGCAGCTATTGGGGCAGATGACTTGTTGCCCATCCTCTCCTATGTGGCTCTGCACTGTGAGCTGCCTCAGCTGGTGTCAGAGTGTGCTGCCCTGGAGGAGTTCATTCATGAAGGgTATCTGATTGGAGAGGAGGGCTACTGCTTGACATCTATGCAAAGTGCTCTGCAATATGTGGAGTCATTGCACACAGGAGGTTTTCAGTTGCACAACACTAAATCGGCCTGATACAGGGTGCTGCTTTGAAATGGAAACCTGTATTTCCCCTTGTTGCAGTGCTCTGGAGTGACAGTGCCTGTTAGCTGCAGACTGGACCACCATTCAACTTAATTCAGATATTCTGCGCAAGAAAGGATCCTATACTTCGGCtttcaaatacattttcttttttttaaagtgcTCCCTATTGAACTGTAGTTTCTATGCAACAATGGTTCTGATGGGCTGGACATGATTTCCAAGTTCTGCTTGTGTTCAGCCAAGTGATTTGACATGGCCTGTTGACTGGTACTTGGACTAGTTGCAATGTGGTATGGTCTGGATGGACTACAGCGTCTGTGGTTATGAGTCCCCTTATTTGAGGGGCATTTAGGTCAAGTGCTTGAAGCTTTGTCATAAGTCACTGAAGTCTAGAAAATATTTTCTTGCTATTGTCCAATATTGCTAATTTTAAATGCTTTCATTTATGAACTGACCCTGTCATTTAATTGAGTTCATGTCTGAAAAAGcactatttaccaccacagagcAAAATGTGTGTATTTTTGAAACTCTAAAAAAGCATGGATTGATAAATGATTGTGGAGATGCTTACAGTATATTATGATAAATGATTCTTATTTTAGGAGAGGAGGTGGAAATGAAGACCCGTATGCCTTTAGATGTATTTAGATTCTAGTTTCATTTTAATCCTTGCATTCAGGAGATGTTTTAGGATCATTCTGAAGAAAATAACTAGGTTGGTATTTATTGTGCTACCTgggaatgtgtgtgcgtgcaataATGTGTGGGATCAATTCCTCTGTGTAAAAGTACATGCACAATTGAGATATGGGGACCCCATGTGACCATGATTAAAACAAATTTACTGTTGAAATTAGTTGGTAATAACTTGTTGGCAGATATTTAGAAGTAATCTTTTGTATTTTGTGCACTTGGGTGGATGGTGTTATAGAGGGGATTCacaagggagggggggggtgttatTTGCTCTTTAGGAGCATCTTAGAACAGAAATTGATAATACttacattttaatttaattaTAACTTTTGCACTTTAGGTTTGTCCCACTTCTGAAATCCCCATCACAAAATCACTGTAATAGTGTGCGCGCAAGATATGGAAGGCATTTTGACATGTTTTCACAACAATAGTGTTTTATACTTACAGAATTTAACATGAATTTATCATGAACTGGTGTTATTACAGTATAACGTTGAGGCATGTTAATTAAAGAGTTttataaaattttatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197700 lncRNA upstream 51195 66535214 ~ 66535447 (+) True G173835
TU197660 lncRNA upstream 52983 66533458 ~ 66533659 (+) True G173808
TU197658 lncRNA upstream 54755 66531666 ~ 66531887 (+) True G173806
TU197657 lncRNA upstream 55932 66530452 ~ 66530710 (+) True G173805
TU197656 lncRNA upstream 56304 66530115 ~ 66530338 (+) True G173804
TU197709 lncRNA downstream 1054 66612644 ~ 66614161 (+) True G173843
TU197710 lncRNA downstream 2783 66614373 ~ 66615201 (+) True G173844
TU197706 lncRNA downstream 3775 66615365 ~ 66617682 (+) True G173840
TU197737 lncRNA downstream 9450 66621040 ~ 66621275 (+) True G173868
TU197738 lncRNA downstream 10002 66621592 ~ 66622003 (+) True G173869
XM_021569243.2 mRNA upstream 4991 66555547 ~ 66581651 (+) True LOC110494295
XM_021569233.2 mRNA upstream 34285 66549545 ~ 66552357 (+) True LOC110494286
XM_021569225.2 mRNA upstream 39314 66537955 ~ 66547328 (+) True LOC110494278
XM_036953707.1 mRNA upstream 57081 66516421 ~ 66529561 (+) False LOC110494260
XM_036953800.1 mRNA downstream 45254 66656844 ~ 66665448 (+) False LOC110494358
XM_036953806.1 mRNA downstream 45338 66656928 ~ 66665610 (+) True LOC110494358
XM_036953816.1 mRNA downstream 66164 66677754 ~ 66688505 (+) False LOC110494385
XM_021569393.2 mRNA downstream 67545 66679135 ~ 66688505 (+) True LOC110494385
XM_021569405.2 mRNA downstream 93712 66705302 ~ 66711432 (+) False meak7
TU196564 other upstream 320619 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 650509 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 945666 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 945666 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 1049855 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 130230 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 343934 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 627300 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 874573 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2249248 68860838 ~ 68861368 (+) True G176612

Expression Profile