RNA id: XM_036953800.1


Basic Information

Item Value
RNA id XM_036953800.1
length 2307
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110494358
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66656844 ~ 66665610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCTCCACCAATGAAGTGATGGGCAGGGTTCAACACCCATTTTCGGGGGCTTGCTATAAAGCTGGTTTATAACAGACTTAAGTACATATAGAGTATTTTGCCTGAATTCCTTCATTTGGAGTGTGAAATTATTTTGAGATTGTAAagTTGCAACATGGAGGACAATTCCTATGTGGTCAAAATGAATGGGAATGGTGTCAATGAGAATAATTCTCTCAATGGCGTCAATGGAAAAGGTCTTAATGGGAATGGTATCCAACATAAGACTGTGAAAGGCAGTGTTTATAAATCCAAGCAGAAGAGCCGCAGGCAGAGATGGAACATCCGGCCCTCAGAGATGTCAATCAACACATTGAATCCCATCCGTGCCATTGTGGACGGGATGAAGCTCACACCCAACCCCGAGAAGCCCATGATTGCTCTATCCATTGGGGACCCTACAGTGTTCGGGAACCTGCCTACCGATGAAAAAGTTACCCAGGCCTTGAAGGATGCCATTGACTCAAACAAATACAACGGCTATGCTCCGTCTGTTGGTTATCAGAAGAGCAGAGATGTGGTGGCAAACTTCTACAGTTGCCCCGAGGCCCCCTTGGAGGCAGAGGATGTGGTTCTGACCAGTGGCTGCAGCCAGGCTATAGATCTGGCCATCACGGTGCTGTGTAACCCTGGAGACAACATCCTAATCCCCTGCCCTGGATTCTCCCTCTACAAGACTTTGGCTGTGTCTCTGGGCATCCAGGTCAAACTGTACAACCTGCTGCCAGAGAAGTCTTGGGAGGTCGATCTTCAGCACATGGAAAGCCTGATCGATGACAGGACAACCTGCCTGATCATCAACAATCCTTCCAACCCTTGCGGCTCTGTCTACAGTAAAGAGCACCTAAAGAATGTCCTCTCTGTTGCCTCCAAAAATTGCATCCCAATCCTGGCTGATGAGATCTATGGTGACATGGTGTTTCCAGGTTGCAAGTACCAATCTATGGCGTCCCTCAGCAGTGATGTACCCATCCTGGCATGTGGCGGTCTGGCCAAGAGATGGTTGGTTCCTGGCTGGAGGATGGGCTGGATCCTCATTCATGACCGGAATCAAATCTTCGGGAAAGAGATTCGTCAGGGTTTGGTTAAGCTTAGCCAGAGGATTCTGGGAGCCTGCACCATTGTCCAGGGGGCGATAGAGAGCATCCTGAACGACACGCCCCAGGAGTTTTACTACAGAACCATCAGTTTCCTCAAGTCAAACTCAGAGATCTGTTTCTCTGAACTGTCCACTGTTCCTGGGCTGACCCCTGTGCTGCCAGCAGGAGCCATGTACCTCATGGTGGGGATTGAGATGGAACACTTCCCAGAGTTCCAGAATGATGTGCAGTTCACTGAGCATCTGGTGACTGAGCAGTCCGTCTTCTGCCTGCCTGCTACGGCATTTGAGTACCCAAATTACTTCCGGATCGTGGTGACCGTACCAGAGGAGATGATGGTGGAGGCATGTGCACGGATCCGGGAGTTTTGCCAGCGCCACTACAGACCCTGCAGCCAAGACAGCAACGAGCTGGACCAATGAGAGACAGcctgagagagaaggagggagaccaGAGAGTATGGATGTAGTAAGGGACAAAAGTGAATGTGAAAAAAAGAGAACGGGAAGAGAGCGGGTGAAAGAAAGAAGAGGAACTAGGGAAGAGGAGTGAGAAAATTATGTTGCACTGCAGGAGCAAAGGATTTAGTAAGAAAGAAGAGGAACTCGGGAAGAGGAGTGAGAAAATTATGTTGCACTGCAGGAGCAAAGGATTTAGTAATGTAATTGGTGGTCGTCCATCTTTGGTAACTTCAATTTATGAGCAGACCTGATATTTATATTTTGTACGGCCATTTTATGTTAAACTTACTTTGACTAATTATTTGGCTTCATGGTTGTACCAATTCTCAAGGCTCCAATGTTACTTTATATGTTGGGTCGACCAAAACCCCATTGGGCCTATAGAACCAGGGACCGGGGTTTTACCCACCCCTTTGTTCAAACCATGATGGGGTTAATGGTTGGGTTGATCCTACCAGGAAAACAAATGGAACTCAAGCACCAGCAGATTACATACAGTGCTTTCCATAGTCTGTgttacatactttttcttgctaGGATTATGATGCTCAACCAAAACCTTTGCTATCTACTTGTTAATCTATCTTCATGTAATAttgaatgttattttttttatgtgaAAAAGTTATTTAAACCAAAGTAAAGCTATGAAATACCTGTTTGTTTGTTGTGACTCATTAGCTCATGGTAATATAAAAACTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197764 lncRNA upstream 6628 66649802 ~ 66650216 (+) True G173893
TU197761 lncRNA upstream 10831 66645803 ~ 66646013 (+) True G173890
TU197760 lncRNA upstream 11219 66645419 ~ 66645625 (+) True G173889
TU197759 lncRNA upstream 12310 66644299 ~ 66644534 (+) True G173888
TU197739 lncRNA upstream 34264 66622344 ~ 66622580 (+) True G173870
TU197756 lncRNA downstream 12566 66678014 ~ 66678467 (+) True G173885
TU197773 lncRNA downstream 25558 66691006 ~ 66691283 (+) True G173902
TU197795 lncRNA downstream 67803 66733251 ~ 66735127 (+) True G173923
TU197787 lncRNA downstream 108024 66773472 ~ 66774254 (+) True G173915
TU197880 lncRNA downstream 186759 66852207 ~ 66858924 (+) False G173989
XM_021569256.2 mRNA upstream 45254 66586399 ~ 66611590 (+) False vps9d1
XM_021569265.2 mRNA upstream 45254 66586399 ~ 66611590 (+) False vps9d1
XM_036953756.1 mRNA upstream 45254 66586642 ~ 66611590 (+) True vps9d1
XM_021569243.2 mRNA upstream 75193 66555547 ~ 66581651 (+) True LOC110494295
XM_021569233.2 mRNA upstream 104487 66549545 ~ 66552357 (+) True LOC110494286
XM_036953816.1 mRNA downstream 12306 66677754 ~ 66688505 (+) False LOC110494385
XM_021569393.2 mRNA downstream 13687 66679135 ~ 66688505 (+) True LOC110494385
XM_021569405.2 mRNA downstream 39854 66705302 ~ 66711432 (+) False meak7
XM_021569411.2 mRNA downstream 39896 66705344 ~ 66711432 (+) False meak7
XM_021569417.2 mRNA downstream 40244 66705692 ~ 66711432 (+) True meak7
TU196564 other upstream 390821 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 720711 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 1015868 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 1015868 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 1120057 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 76372 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 290076 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 573442 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 820715 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2195390 68860838 ~ 68861368 (+) True G176612

Expression Profile