RNA id: XM_021569393.2


Basic Information

Item Value
RNA id XM_021569393.2
length 1650
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110494385
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66677754 ~ 66688505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCCCTCAGTTGACCATTGGGAGGATGTGAATGCTGCGTATGGGGACATCGCCGCTCTAGTACGGCAACCTGATTGACAAACATCACCAACGCCCATAAACTGGATATAGGAAATGAATCGAGTAGTGAAAATAGTCTATTTCTCTGATAATTGAGAAAAGATACACCCTTTTCCGCGCACTTCTCGTGTAATAGCGCATGTTCAATAGGGGCGCGTGATTTCAGACTATTGAGTCGTCTATTGTAGAACTCACGTTCTGctcattttggattgttcttttCTCGGTGTGCTTTCTTTCATCTCTAGGCTACTGTCCATTTGCGTCCACCCAAAATGGCAACAAGAATCGATAAAGAGGCTTGCAGGGAAGCGTATAACCTCGTCAGAGACGATAACACGGAGATAAACTGGGCAGCGTTTAAATATGAGGGCCATATGATTGTGCCGGCGGGCCAGGGGACTGATTATGAAGAATTCAAGAGTCAGTGCACAGatGATGTGCGTCTCTTTGGCTTTGTGCGGATCACAACGGGTGACGCCATGAGCAAGCGGGCCAAGTTCACCCTCATCACCTGGATAGGGGAAAACGTAAGTGGCCTGCAGCGTGCCAAGATCAGCACTGACAAGACACTGGTGAAAGATATTGTCCAGAACTTTGCTAAGGAGTTCATGATCAGTGATGCTCGTGAGCTGGAGGAGGACTACATTCGCACCGAGCTGAAGAAGGCAGGCGGGGCCAACTATGACGCCCAGGGAGAGTAGAGTAAAGTCCACAAGGGCAGGGGAGGGGCTGCTACCttttgggggagggaggggtctcCATgcctggatgagagagagagggggatatacacacatacacacatacacacatgcacaaacacacacgcacacacagaaacacaacaacaacaacaaaaagcacaTTGAGACACACTTAGACATATGCCTACAgtcctatcctcagccctcttaCCAGTTAGGTCATGGTTGattatctactgtactgtgcatCATCTCACTCATCTCAGCTGCGCCACAACGTTTAGAACTATCTCAATCTGTGGTGCTGTGTTTGTTACAACTGGAAAAGACacgttactgtactgtatatcagaaGGGCAGAatgattctctttctctctctgattggaCTTATCATCATTGTGCTTTTACTGTATCTTCCTCTGTGGTTGTAGTCCAAACATGCATCATTGGCTAGTAGAGGTCTTTCCTGCCCAGCAGTCTCGTCTCCCAATCCACCCCCAAGGTATACCCCACTGTGTTTACTGCCTTAATCTCCCATGGAGAGAAGGGCATCATGGGAGTTGTGTTTGTGGACACTACACTGTTATTGGCTATCCTCCACTCGGGGGTGGGACTAAGATTCGCCTATGGAACACAAACCAATAGGGCAGGGCTGTAGCACTGTCAGTCGGCCCAACCCAGGAGCAGCCATCTCTCTGTTGTAGCCTCTTTTTATTTGGATTAAACCCCAAAAatgaatgtttttattttctctAAGAGTTTAACCTTTGATTTATTCTTGAGAGCAATGTTATGTAGGAGATTTACGGAGACATTTAAAAACTGAACTGGGCACACGATCAATCATTTCTGAATAAAACCGTTGTTTTTTTTCAAGCTC

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197756 lncRNA upstream 668 66678014 ~ 66678467 (+) True G173885
TU197764 lncRNA upstream 28919 66649802 ~ 66650216 (+) True G173893
TU197761 lncRNA upstream 33122 66645803 ~ 66646013 (+) True G173890
TU197760 lncRNA upstream 33510 66645419 ~ 66645625 (+) True G173889
TU197759 lncRNA upstream 34601 66644299 ~ 66644534 (+) True G173888
TU197773 lncRNA downstream 2501 66691006 ~ 66691283 (+) True G173902
TU197795 lncRNA downstream 44746 66733251 ~ 66735127 (+) True G173923
TU197787 lncRNA downstream 84967 66773472 ~ 66774254 (+) True G173915
TU197880 lncRNA downstream 163702 66852207 ~ 66858924 (+) False G173989
TU197878 lncRNA downstream 165820 66854325 ~ 66858924 (+) False G173989
XM_036953806.1 mRNA upstream 13525 66656928 ~ 66665610 (+) True LOC110494358
XM_036953800.1 mRNA upstream 13687 66656844 ~ 66665448 (+) False LOC110494358
XM_021569256.2 mRNA upstream 67545 66586399 ~ 66611590 (+) False vps9d1
XM_021569405.2 mRNA downstream 16797 66705302 ~ 66711432 (+) False meak7
XM_021569411.2 mRNA downstream 16839 66705344 ~ 66711432 (+) False meak7
XM_021569417.2 mRNA downstream 17187 66705692 ~ 66711432 (+) True meak7
LOC110501804 mRNA downstream 28681 66717186 ~ 66731976 (+) True LOC110501804
XM_021569469.2 mRNA downstream 136742 66825247 ~ 66828635 (+) True foxl1
TU196564 other upstream 413112 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 743002 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 1038159 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 1038159 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 1142348 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 53315 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 267019 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 550385 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 797658 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2172333 68860838 ~ 68861368 (+) True G176612

Expression Profile