RNA id: XM_021569456.2


Basic Information

Item Value
RNA id XM_021569456.2
length 4844
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110494421
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66775234 ~ 66790323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTCGAAAATACAGCACAATGGGGGCTGTGTTCGATTACTTTGAAGATGTATCCACCCTTTCTTCCTCGTGCATACACTAAACTGTATGAAAGCGGGAAACAATGTTGCCACGTATCCATATTTATCTCAGAAATGTGATTGTTCCAGGGGAAGGAATGTAAAAGTATTTTAACGGAGCCTGGCTTGTAAAATAGAAAAAGTGTGCTAAacgcttctttaaaaaaaaaatattaatctcGCGTTCTGCTTCTGACTTGTGTGGCCCATGCAAGGTAGGCTACAGTGAAGTGGGACGAAGCCAATGACTATGTCATTCCATTTGGGACGCTCCCTGTTATTTGTTTATATCTAGTTAGTTAGCGAGCTAGGAACACAATGTCCAGTACTGAGTCCGAGGTTAGCGTTGCAGGTTCGGTGGTGTCAGACCCTCAACACTCTCAGAAACTTCTCAAGGCCCTTCGCTCCTTTTGGCAAGAACAATGCTTCCAAGACGCAGTGTTAGTACTGGACGGGGAAAAGATTCCAGTCCAGAAAAACATTTTGGCTGCGGCTAGTCCATACATCAGAACAAAACTGAACTACAACCCTCCAAAGGAAGATGGATCCATGTACACCATTGAGCTTCAGGGAATCTCTGTCACTATCATGAAGCAGATCCTGGACTACATCTTTAGTGGGGAGATCAGTCTGAGTGAGGACACCATTCAGGACATGGTGCAGGCTGCTGACCTGCTGCTTCTGACAGACTTGAAGTCCCTGTGCTGCCAGTTCCTAGAGAGCTGCATTGCTGCAGAGAACTGCATTGGGATCCGGCTCTTCTCTCTACATTACTGTCTGCACCATGTTCACCATGTTGCcacagatttcctccagacacaTTTCCGTGATGTGGCTGCCACGGACGAGTTCAGGGAGTTACCCCCAGACCGGCTGTGTGAGATCCTGTCCATGGAGAAGCTCAACGTGGGCAATGAGAAGCATGTCCTGGAGGCTGTGGTGCGCTGGCTCGGTCATGACCTGGAGGAACGGAGGGTGCACATGAAAGAGGTGATGTCATCAGTGTGGATCCAGGGCCTGGACCAAGGTTACCTGAGGGAGCAGGTATTGGGAGAGCCCTTGATGAGGGAGGTGATCAGGGAGTACTGCAACGCTCCACTGGGGGGTGCTGCACTGCAGGGTGAGGCTCTTCTAGCCGCCTTCAAACCTCGTGGCTACTCGGAGTGCATCGTCACtgtaggaggggaggagagaggAACGAGGAAGCCGTCAGCCATGGCACGCTGCATGTGTCCACTCTATGATCCAAACCGTCAGCTGTGGATCGAGCTGGAACCAATGAGCATTGGCCGAATAGGGCATGGGGTGCTGGCTGCAGAGGGCTACCTCTTTGTGATGGGTGGTATGGATGAAACTAAGATGGTCCTGAGCAGTGGGGAGAAATATGACCCAGACACAAACACCTGGACCCCAATTCCTTCCATGAAACAGGCGAGGCAGAACTTTGGTGTTGCAGAGCTGGATGGGATGATCTATGTTttgggaggagaggatgaggacaTAGAGCTCCTGACTGTGGAGGTTTTCGACCCTCACTTTAACACCTGGACAACCCAAACCAGCATGACAATGGTCCGCAAGATTGGCTGCTATGCCACCATGAAAAAGAAGATCTATGCAATGGGTGGTGGGTCATATGGAAAGCTGTACGACTCAGTAGAATGCTATGATCCGAAGACCAAGCAGTGGACTGCAATCTGCCCTTTGAAAGAGAGAAGGTTTGGCTCAGTGGCATGTGGTGTGGGTCAGGAACTCTATGTGTTTGGAGGCGTGAGGAGCCGTGACTCAGACAACCCAGAATCCAGCACCATGACCACCTGCAAGTCTGAGTTTTTCCATGATGAGATGAAAAGATGGATGTACCTTGATGACCAGACTCTCTGTGTTCAGACCAGTTCCTCTTTTGTGTATGGCGCTGTCCCCATTGGTGCCAGCATCTATGTAGTGGGAGACTTAGACACTGgtACAACCTATGACTATGTGAGAGAATTCCGTCGCAGCTCTGGGACGTGGCACCGCACCAAGCCCATGCTGACATCTGATCTGTGCAAGACTGGCTGTGCAGCCCTGCGCATCGCTAACTGCAAACTGTTCCGTCTGCAGCTGAAGCAGGGCCTGTTTAGACTCAGGGTCCCGACCTCCTAGATGGAGCTCATTTAGGTGCTCTGTCTCCACACTCACAGCAATGGAACATGAGAATGGAGGTTGAAGGGATGACCCAATGGGGACGTTTGGAGTATTTATCTGCATATTTTGGTGGCTTTCTTAGGTTCCATCAGGGTATTATTCTATGTGTGGGTACTTGCTTGAAGAGGGATGGCTTTTTAAACATGACGTTATTTCATATGCAATTTAACAATGGGTATGATTTGTAAATAGGTTTTACTGACCATTTACCCATTGCTTTTTGTTTACTACGTTCTTGCTGCTGTTTGGTGGGTTTTAAAGAATTTAACACAAATTTTAAGGGGAGAAAAGCAAGAATGCCATAGTACTGTCATTCATTATAGCATAGGTAGTCATTTTTAAGGAAAATCTATACCCATGTCTAACACTGCATTTTTTTGTTAAAGATCAGTCGCTGAATGACAACGAGACATCCCATTTTCGTTGTTACCTTATAGTAGCTAAGGGATTCGTGGCCTTTGAATAGACTTGGGCGATATGGACAAATCCATAATTATATTGTGACTGAATTGTCACGATAATGATACATTTATTGTATAACATTAATGTGCATCGGTTACTTTTTACATTATCCTTAGGTACAACACTCAAAGTAGTAGTTATCACTTGTCCTGTTAGCATTCGCCCATATTAGCAGCCTTATTtcgtttcaaacttcacatttatTTAGTATAGACTACTTATCGATATCAGTAAGATGTCCTCGGTGGTGGGTTTGGTTGGTGGCAATAATTTTTCTGGTTTATCATGACAACTAGAGATACACGAGGAGACTTCTAAAATAACAGATGTGGTTTTACTTGTTCCCTTAGCTAAGGGACTTGTAGCCTATAAAATAAGCAAAATGTTGTCTTTACCCACAAACTTAACTTAGACTGTTTTTAAATGGACAGCTTTGAATGAGTAATGCCAGAAGCTGGAGCATACTTTGTATTGAAATGGTAACAGGTTTTATATAACGTTACTGTATCTTAAGTGAAATCTCTTTGGGACGTGCGTGTTTAGTGAATGTAAAGCTGAGTTAAGCCCCTTCCTTCCATTGGTTTCCCCTTAACCAAGCACTCTAGGCACTGTGTGGGCCAGAAATGGATTTAGAGTTACTGGTGTCACTCTTAAGTTGCTGGATGTATTTTGCTGATGACTTTTGAACTGGCTTTCCAGTCATTGTGGATGATTTTCTTGGCATCTGTTAACCCCATTTGTTCTGTGTGAGTTACAGCTGTTGCTGTCCATCCCATTTGAAGGGAAACTTGTCTCTCACACGGTACAGAACTCACAGAAACATATTTTTAAAATTCATTCACACGCCTTTATGAAGCCAACAGAGCTCAGGACACTTCTGAAAAGCACCAAGAACAAATGTAAGAACGGGTATCACAATTTACAATTAACACTGTATACTTGCAGCATGTTAGTGTATTGCTGAGAGACTCAACATTCCATAGTCTTTAGTGTAAACTGTGAGAGTGACACTATCTGCATTCTAGTGGTCCAAACAGTGCTTTCACAAAACATTCACCCATTGTGTAACTATCAGAACACTGTGATATGCGCTTTATGCATTGTTCTTTGAGGAATTCTGCAATAGTACCATCAAGTGGTTGTTAACCAAAGTTGGGATGTGAGAGGACCATGAATTCAAatctgtttatttttgtattcaaTTTTGTGGGGTAGCAAGGAaggtgtcatggaaagagctcaATTATGAGTCTTCAGTTTAACAAGATGATTAAACAACACTGGCCAACTCAGTAGTTATTCCTCTGTGACTTCAGCCCTGGTTTAAATCAAGTAGCATTCAGGGTGTTGGAGTTTTGTTTTTATGTTTCAGAGGATTCAGGAGAAAATGAAGAGGTATTCCTCAAATAATCCATTATATTTGGGTAATTGTTTGTTTTAATCTCTCGGAAACAGATTTTCTTGGTAAACTGTTACAGATTCAGTGACACTGTTGACTTGTAACTGTGTGTGTCTTAGATGAGGGGCAAGCATCGGATTAAGACAACAGGTTTACTGAAGATAATCAGGATGGAGTTAACCAAGCTGCTCTCATGACTTTCTCAATTTAACTATAGTCTTGTGACTCAACACCGAGTGGCTAATGTTAAACTGAGCCCTGAGAGACTACTGCTTCTGCTGCAGTTTGGACACAGGATTTAGGCTGGGATTCAGCTTGGAGCACTGCCCACTGAACTTCCACTAGAAAAGACTTGTGGCATGTGAAGGGAAGCCTATCAGAAAGCCACCAGCGCACTACACTGCATTGACAAAACCTGTTTGAGATTTACATTGAgcataatatttttttaaaataataatgcaGATTGTAAAGTAATTAATTCCACAGACATTAAGAAACCTCATGTTATTCCATAAGGTCTTGAGCTTGTTTGTAGGCCTTCATCGTTGCATTTCAGTGTGGTGGATCATTTTAAAAGACACTACATATGGGGTTAAAGTTCCTCATATCTGACATTTCAAAACTGCATCATGACAGTCACTGTTTTTCTTTCACTTTCAGCTTTACTTAACATTCAGGCATGAGCGGCTGAGGCACATCTGCAATGTCGTGGTCAAGTTAAGTAATGGGAGTGG

Function

GO: NA

KEGG:

id description
K10453 KLHL16, GAN; kelch-like protein 16 (gigaxonin)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198410 lncRNA downstream 40107 66733237 ~ 66735127 (-) True G174470
TU198457 lncRNA downstream 79555 66695293 ~ 66695679 (-) True G174508
TU198422 lncRNA downstream 120843 66652531 ~ 66654391 (-) True G174475
TU198372 lncRNA downstream 153230 66621575 ~ 66622004 (-) True G174447
TU198354 lncRNA downstream 221322 66553555 ~ 66553912 (-) True G174437
TU198534 lncRNA upstream 61178 66851501 ~ 66851815 (-) True G174580
TU198538 lncRNA upstream 73378 66863701 ~ 66863937 (-) True G174584
TU198540 lncRNA upstream 78433 66868756 ~ 66869181 (-) True G174586
TU198585 lncRNA upstream 129430 66919753 ~ 66919999 (-) True G174630
TU198587 lncRNA upstream 131662 66921985 ~ 66922274 (-) True G174632
XM_036953831.1 mRNA downstream 913 66735181 ~ 66774321 (-) True LOC110494415
XM_021569363.2 mRNA downstream 96465 66667874 ~ 66678769 (-) False LOC110494363
XM_021569372.2 mRNA downstream 96465 66667874 ~ 66678769 (-) True LOC110494363
XM_021569380.2 mRNA downstream 96656 66667874 ~ 66678578 (-) False LOC110494363
XM_036953795.1 mRNA downstream 131645 66641062 ~ 66643589 (-) True LOC110494342
XM_021569491.2 mRNA upstream 63983 66854306 ~ 66858988 (-) False ces3
XM_021569482.2 mRNA upstream 63983 66854306 ~ 66859005 (-) True ces3
XM_036934666.1 mRNA upstream 297904 67088227 ~ 67113877 (-) True LOC110494458
XM_021569617.2 mRNA upstream 439797 67230120 ~ 67232289 (-) True chtf8
XM_021569596.2 mRNA upstream 449722 67240045 ~ 67251423 (-) False LOC110494484
TU198454 other downstream 82384 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 384468 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 436848 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 476920 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 853005 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 2800812 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 2903286 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 3770199 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 3978835 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 4115049 70905372 ~ 70906254 (-) True G179215

Expression Profile