RNA id: NM_001185030.1


Basic Information

Item Value
RNA id NM_001185030.1
length 1301
RNA type mRNA
GC content 0.40
exon number 4
gene id il17c2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67177661 ~ 67180759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAAACCGAGCAAAAGCACCTGGGCTCCTCTACTACCAAGATATTTGATATTTTAACATGCCAGGCCTATTCAAGATTATGCAGACTCTAATTTTACTTGGACTTGTTATCGCTACATCAGAGGCACACAAGTATAAGGGATGCTTCAGTACAGAAAAACTGGAGCATAGAGCTCTCAAGATCCTTCACCGAAACCGGTACCAGACAGATGTTCATATTGATGAAACACAGTATCACAAACTGGGTATGAAGAAGACCTGCCCCACTGTGCTTCGTTCACAGTCAGTAGACTACAACAATCGTTCAGTCTCCCCCTGGCGGTACAGCATCGATAGCGTGGAGGGACGATTCCCTGAAAAGATTGTTGTTGCTGAATGTCTATGCGAGGGATGCCTCATCATTAAAGGGCCTGGACACCACGGGGCCCAACATCATGCATATAACTCTGTGCCTATAGAGCAAACCCAGATGGTATTGATGAAGACCGTATGCCTGAACAACCCAGAAAAATACTCACTTACATCACACTTTGTCAAAGTGCCCATTGCCTGCACCTGTGTCAGGAGTAGGATATGATTGCCTCTCATAGAGGACAGTTTTTAGACAAACTGTCGTGACatgtttcacattttgttgtttgtttttaaaATGCACTTACGCTGTTGAAAGTATTACACTTAATATGCTTATGGATAATACGCTATAGAGAATACATGCATTTTTATATGAGACAAAATGATTTGTGTACAGTATTTATGTTTCAAGATTGTATTTATTTGATGATCTATTGATTATTTATTGAACTAGCTATGTTCTAAAGCTGTTTATTTATATATGGTTTTTGGTGACTTTTGTTAATAGGCCTGCCTATTCCTTTCAACATCAATGTGTTCTTCTGTTGTTGTTTTCCCATCAGCTGCTCcacaggctcccgagtggcgcagcggtctaaggtactgcatttcagtgcttggggtgtcactacagacaccctggttcgaatccaggctctatcacaaccggccaaaattgggagtcccatagggcggcgcacaattggcccagcgttgtccgggtttggctagTGTAGGCCaaattaagaatttgtttttaactgacttgcctaggtaaattaaggttacatttaatatatatatagcatctCCACTACAaaggtagtatatatatatatatatatatatatatccatggaTATTGATTGGTAGTGATGCATTTATAGAAATGTAGCATCATTTATGGGATTTTATTGTTGATTCCTTAATAAAGATGCCTAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198052 lncRNA upstream 90996 67087793 ~ 67088059 (+) True G174155
TU198048 lncRNA upstream 95720 67082972 ~ 67083335 (+) True G174151
TU198047 lncRNA upstream 96090 67082535 ~ 67082965 (+) True G174150
TU197928 lncRNA upstream 183544 66993617 ~ 66995511 (+) True LOC110494451
TU197978 lncRNA upstream 200006 66972995 ~ 66979049 (+) True G174083
TU198125 lncRNA downstream 22113 67202872 ~ 67214318 (+) True tango6
TU198145 lncRNA downstream 33894 67214653 ~ 67214887 (+) True G174244
TU198155 lncRNA downstream 47093 67227852 ~ 67228503 (+) False has3
TU198153 lncRNA downstream 47995 67228754 ~ 67229385 (+) False has3
TU198152 lncRNA downstream 48319 67229078 ~ 67230076 (+) True has3
XM_036953889.1 mRNA upstream 2533 67135942 ~ 67176522 (+) True LOC110494462
XM_036953899.1 mRNA upstream 2712 67135942 ~ 67176343 (+) False LOC110494462
XM_036953894.1 mRNA upstream 3337 67135942 ~ 67175718 (+) False LOC110494462
XM_021569506.2 mRNA upstream 183534 66900017 ~ 66995521 (+) False LOC110494451
XM_021569469.2 mRNA upstream 350420 66825247 ~ 66828635 (+) True foxl1
XM_021569556.2 mRNA downstream 341 67181100 ~ 67214348 (+) False tango6
XM_036953918.1 mRNA downstream 36033 67216792 ~ 67230218 (+) False has3
XM_036953931.1 mRNA downstream 36033 67216792 ~ 67230218 (+) False has3
XM_021569582.2 mRNA downstream 36034 67216793 ~ 67230218 (+) False has3
XM_021569567.2 mRNA downstream 51519 67232278 ~ 67239902 (+) False LOC110494472
TU197931 other upstream 206600 66955524 ~ 66972455 (+) False LOC110494451
TU197812 other upstream 436842 66741820 ~ 66742213 (+) True G173938
TU196564 other upstream 913032 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 1242922 65935596 ~ 65936133 (+) True G172639
TU196057 other upstream 1538079 65593517 ~ 65640976 (+) True jph3
TU198150 other downstream 58131 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 305404 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 1680079 68860838 ~ 68861368 (+) True G176612
TU200792 other downstream 1775504 68956263 ~ 68957886 (+) True G176725
TU201174 other downstream 2275799 69456558 ~ 69457433 (+) True G177067

Expression Profile