RNA id: XM_021569604.2


Basic Information

Item Value
RNA id XM_021569604.2
length 2383
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110494484
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67240045 ~ 67251423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGGCAGACGTGCTTGTCGTGCCAGCAGACCGATTTAACCCTCTCCTCAGAATAACTGATGCACAGACAGCTGCATTTCACTTCCTCTCCTTGACTCCCTTAACTATCTCCCGCTTTCCTTTTCTCTCCACAGTAGCTCTATTCATTCTTTCTCCTTCTTTCCGTTCCTCTTCCTGATTTTCCCTTGCAGTTTTCCCTGCTCAGATGGCTATAAAGACTTGTCCTGTAGCAGAGCTTGTGTAATCGCTGGCTTCACAGGAACACAAGAACAGGAGCCCCTGCCTCAATACCGGCCCAATAAGGAATACCAAGCACTGGACTGAACAACACAGCGTTGGAGGGAAGGATAAAACACAAGACATACAAAGAAAAACAGGCCACCTTTTCTAAACTCCAAGGAATAAGGATACAATACAGAATACAAGGAGTGGCAGAAGAAGAGACGAAACAGTGTGAGGAGTACAGGAAGAGTTCCGTGTTAGACCATGCCTGGCTGTCATGTCCGGACACCGCTGGTGCTGGTGCTCTGCATGCTGGTGCTGTCCTGTGGGTCAGGAGGCGCCCGGCGGATCAGGAAGAGAGGGCTTAACCAAAAGGACTATGAGTATCCGAACCAGCAGTCCCAGTCCACCCAGCACCAGAAGAACGACCGCTGCCCACCCCCACCTCAGATGCTACCGGAGCGGGCCTGCGAGGTGCCCGGCTGCCGCTCTGACTCAGAGTGTGAGCGCCACAAACGCTGCTGTTACAACGGTTGCATCTACGCCTGTCTGGAGTCAGTGCAGCCACCACCAGTGCTGGACTGGCTGGTTCAACCCAAGCCTCGGTGGCTGGGAGGGAATGGCTGGCTTCTAGACGGTCCAGAGGAGGTACTGCAGGCGGAGGCATGCAGCACCACAGAGGATGGTGACGAGCCCCTTCACTGTCCCACGGGCTACGAGTGCCACATCATCAACCAAGGAAACCCCGCCGTTGGCATCCCCAACAGGGGACAGTGCATCAAGTCGCGTGGTAACTCTGacGGACGTCCCATGAGGCAAAAGTCCTACAAGGACTATAAGGATTACTTGGGAACTGGAAGCAGCTCTAATAATGCTGTGGCCTATGAGAAACACCACCACAAACATCTGGGATGAGATCAATGTCTTTCCTTAGAGCATCGGATACCTCTCCACAGAACCTCAGCTATCAGAGCCCAGATACCAAACCTCTCATCAACAGAACACAACCAAACCAGACCTGGTAACCTCACGGTGCGTTACATTTCTCATGTCTGGCCTGGGAAAAGGACGAAAACAAGCCTACATTTCCTACCTCTTCTCTAACTGGTATACTCACTTTTGTTGTAATAATGGTCCAGGCAGGATTAACACATAATACACTACTTTGAGAGATTCACACACAGAAACGTGTTGTGATTTTGTCATGGGTAAAGAATAATGGCGTTATGGTTGAAGCAGAGAAAGGTATAAGACAGTAAACATCAAAGCACTTTTCTTTCCATCTCAAACtgggaaataaaaataaaacatgccATTATTCTATACATAATATCTAAGTAGATCCACTGCAAAACACTCCACAactagacgcacacacacacccgccaCCTAGGCAGACCAATGTTTCTCCAACTAATAAGTATTttcaccaatcagatcagctctgaaaaagaacTGTGAAAAGAAATGCAATTGCTCAAAACTAGTGGAAaaattggtctgcctgtgtaaacccAGACATTGAATCCTAACCTGAGGCTACTTGAGGGCTGGTCAATAGAAAATAAGAACCATGTGCTGCTGTTGGCCCACTCACCCTTCAGGCGAGCAGGATGAAGGTCCCATAAACACACAGGATTTATGGTTATCAGACTGAAACCCAGAAACAGACCCAGAAACAGCTGGGGGTCAACCAGAACCACAGACTCCATACATTCATGTAATAACTTCACAACTACCCTCCACTCTACTGACAGCTTGAACAAAGGCTGTCTGTCTATCATAGTGGGAGAGCAAGCTAGGCCTTACACCAATGATCACATCACTTTCAGAACATCGAATAGTTCAAACTATCGAAAGTGAATCAAATTGATCCTATTCCATCCAGTATTTTCACAAAAATGTGCTTTAGtataataaacagtgagtggTTAGGAGTCCACGTCTGTATTTGAGTACTAAATGAAATGGTGCTCAGTTCCAAGGCTGCCTCTTCTAACAGGACAATAAGCGGGTCTACACACAAAGACTGAATTACACAACTAATAAGCTAGAGGTATGAACAAGATGTAACTCTGAGTGAAACAGTGATATCCAAATGTTGTCAAACTGGTGCTGTAATGTTGCTTTGTGTATTCTAAATAAACTTGTTTGAGGCATG

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG:

id description
K23635 WFDC1; WAP four-disulfide core domain protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198779 lncRNA downstream 10999 67228819 ~ 67229046 (-) True G174814
TU198713 lncRNA downstream 152024 67087801 ~ 67088021 (-) True G174756
TU198712 lncRNA downstream 152333 67087498 ~ 67087712 (-) True G174755
TU198601 lncRNA downstream 305827 66933999 ~ 66934218 (-) True G174646
TU198595 lncRNA downstream 309739 66930099 ~ 66930306 (-) True G174640
TU198848 lncRNA upstream 13029 67264452 ~ 67264669 (-) True G174882
TU198869 lncRNA upstream 61202 67312625 ~ 67312845 (-) True G174902
TU198870 lncRNA upstream 63735 67315158 ~ 67315373 (-) True G174903
TU198871 lncRNA upstream 65300 67316723 ~ 67316986 (-) True G174904
TU198901 lncRNA upstream 113497 67364920 ~ 67365256 (-) True G174933
XM_021569617.2 mRNA downstream 7756 67230120 ~ 67232289 (-) True chtf8
XM_036934666.1 mRNA downstream 126168 67088227 ~ 67113877 (-) True LOC110494458
XM_021569482.2 mRNA downstream 381040 66854306 ~ 66859005 (-) True ces3
XM_021569491.2 mRNA downstream 381057 66854306 ~ 66858988 (-) False ces3
XM_021569456.2 mRNA downstream 449722 66775234 ~ 66790323 (-) True LOC110494421
XM_021569630.2 mRNA upstream 14032 67265455 ~ 67281288 (-) True si:dkey-246g23.4
XM_021569642.2 mRNA upstream 50777 67302200 ~ 67304139 (-) True LOC110494509
XM_021579654.2 mRNA upstream 97861 67349284 ~ 67354722 (-) True LOC110501813
XM_021569676.2 mRNA upstream 151718 67403141 ~ 67485766 (-) False si:dkey-246g23.2
XM_021569669.2 mRNA upstream 151718 67403141 ~ 67486026 (-) True si:dkey-246g23.2
TU198454 other downstream 547195 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 849279 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 901659 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 941731 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 1317816 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 2339712 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 2442186 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 3309099 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 3517735 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 3653949 70905372 ~ 70906254 (-) True G179215

Expression Profile