RNA id: XM_036954143.1


Basic Information

Item Value
RNA id XM_036954143.1
length 2677
RNA type mRNA
GC content 0.49
exon number 4
gene id siah1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 68920701 ~ 68947106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCTATGGTGCTCAGCCAGGACTGTCTGTTTCACCCTAATACCTGCCTCTCGCTGCCTTttccactgactgactggatcACTCAGAAGATAGTGACCGAGCAGGGAGTGGTTACCTAGACTAGGGCTTTCAGGAGAAGAACACTGCCAGTGTTTCCTTAGCTTCCTCTTCAATGTGCTCCATTTCTCTCCCTGGCTGGGCTGCCTGCTTGCCGCGGAGCTGGATATACTTGTGTAACATTCCTGGATTACAGCTacgtgttatttaaaaaaaaaaatatatatatatatatatatatttttttttattctctACTTGGGCCCCTCCTACCCATGGCTCCTCCACCCTTCCTTGTGGCCTTTTCCTGGGCTGCACTTTAAAGAGGATTAAGACTACAGCCTCCTGCCCTCTGCCGTGCTGGTGAAAGAAGTGCGTGAATCGGAGTCTCTGGCTCTGTTTGAGGCGTCCAGCCCGCCAAGGTGTCTGGCCCTGGACCCCCAGGCTCTGACTGCAGTAGTACATCTGTTTTCTGATGGGAGTTTAAGTAGAGACCTAGGGAGAGTGACGGGAAAGGATCTGCCCTCTGTTATGGGCTGTTTTTGTTCTTATGGAAAAACCGCGATGAAGAGTTCCCTCACACTCTCCCTATGTCGGGCAGAGCTAATGTTCAGCCCATGAACTCATGGAAGGGGGTGCTCAAGCTCTTCACATGCATAGCTTCTAGAACAACTGCCAACAAACCTAAAGAGTTACCCATTTTTCAAGAGAAGAAGAAAGCCTTATTTGGGAATCTTATGGACGAAGAAATGAGTCGCCAGACCGCCACAGCGCTGCCCACAGGAACCTCCAAGTGCGCCCCCTCCCAGCGCGTCCCCACCTTGTCCGGCACTACGGCCTCTAACAGCGACCTGGCCAGCCTGTTTGAGTGCCCTGTCTGCTTCGACTATGTGCTGCCCCccatcctgcagtgccagagCGGCCACCTGGTCTGCAGCAACTGCCGGCCCAAGCTCACTTGCTGCCCCACCTGCCGGGGCCCGCTGGGCTCCATCAGGAACCTGGCCATGGAGAAGGTGGCCAACTCTGTGCTGTTCCCCTGCAAGTATGCGTCGTCGGGCTGTGAGGTGACGCTGCCCCACACAGACAAGGCAGAGCACGAGGAGCTGTGTGAGTTCCGGCCATACTCCTGCCCCTGCCCAGGGGCCTCGTGTAAGTGGCAGGGCTCGTTGGACGCGGTCATGCCCCACCTCATGCACCAGCACAAATCCATCACCACGCTGCAGGGCGAGGACATCGTGTTCCTTGCCACGGACATTAACCTGCCTGGGGCAGTGGACTGGGTCATGATGCAATCCTGCTTCGGATTCCACTTCATGCTGGTCCTGGAGAAGCAGGAGAAGTACGACGGTCACCAGCAGTTCTTTGCCATTGTGCAGCTGATTGGCACGCGGAAGCAGGCAGAAAACTTTGCCTACCGCCTGGAGCTCAACGGGCACCGGCGACGGCTCACCTGGGAGGCCACGCCCCGCTCCATCCATGAGGGCATCGCCACTGCCATTATGAACAGCGACTGCCTAGTGTTTGACACTTCCATCGCGCAGCTGTTTGCTGAGAACGGAAACCTGGGCATCAACGTCACCATATCCATGTGCTGAGGACTGTCAAATGGACagccactaacacacacacacacacacacacacacacacacacacactttctctcacactctctcacacacacatactcggACACATTTCAGACACTACAGGACACCTGAAGTTGTACCTGGGGGGTTTGGAGGGGGGCAAGATCTTTCCCAGGGAACCTGTTGTCTTCAAACAATGTGATTTAGAACATTCAGATCGGTTAGATTGATGAAAACAATGGAACTCTATCCCTGGGATTCAATTTTAAGCTTCATTACAATATTAGTTCTAAAGTAAAGGTATCCTTTTTTTACCTTAATGTTATGAGAATAATCCAGCATTGCCCCTTGAACCCAGAGCACACACTTCAACAGATGGGCTCAGTTTGCAGTGGGAAGCTGGCAGAAGGGGCTCAGGGGATAGACACGGTGGGAGGAGTCAATTTGAGGGAGGATGGGGAATATAAAACAACTTATTTTTTGAAGATGTTGCGTTTTTCAGCTTAGTCAAAGTGAAACTAACTTCTTTCGGTTCATTATTGTTTTGATTTTTAGTTCTGTCCCCCCCCCTCATTGGATGAGAAGAGAAGGTCCTGATATTGTGTGCACAGACATTGGCTGAGACGAAGCTAGTTTGGTCTCTCTCTGGAGCCTAACAGTTTTAGCCTAAACCACTGAATATCTGACCAGGAATGGGGACAATTTCTACAGTTATATTATTATTCAATGGAGATTTATCATTATCATTTTTTTGTAAGGACTTTTAATGAATGAAAAAGGCTGTAACCTTGAGGCTAATCTTCAGTGTTTGTAGATAAATTGTGTTGTTCTTTCGAAGACttcaatgtattttattttgtaagTTAGATTTTTCTCTTTGTTTTGTCAGTCTTTGTCTACATTCTGTTTGAGGAGTGGGTGACGCAAAGCCAAACATCTCTGGATACGTAGAACTATTGCTGGTCCCatcattattttgttttattttgtcatTAAATAAATCTATCTTTTTCATACCTTGTGCAATT

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04506 SIAH1; E3 ubiquitin-protein ligase SIAH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200640 lncRNA upstream 116941 68810810 ~ 68811228 (+) True G176583
TU200540 lncRNA upstream 126890 68734696 ~ 68801279 (+) True G176494
TU200587 lncRNA upstream 131430 68796267 ~ 68796739 (+) True G176534
TU200538 lncRNA upstream 189877 68733873 ~ 68738292 (+) False G176494
TU200544 lncRNA upstream 190935 68733570 ~ 68737234 (+) False G176494
TU200791 lncRNA downstream 4241 68951347 ~ 68952410 (+) True G176724
TU200818 lncRNA downstream 31934 68979040 ~ 68979298 (+) True G176751
TU200820 lncRNA downstream 34226 68981332 ~ 69003884 (+) False G176752
TU200821 lncRNA downstream 34226 68981332 ~ 68993911 (+) True G176752
TU200882 lncRNA downstream 61292 69008398 ~ 69008682 (+) True G176801
XM_021569790.2 mRNA upstream 18697 68883169 ~ 68909472 (+) True LOC110494586
XM_021569775.2 mRNA upstream 274669 68645475 ~ 68653500 (+) True cbln1
XM_021569763.2 mRNA upstream 335310 68553754 ~ 68592859 (+) True si:ch211-212o1.2
XM_036954080.1 mRNA upstream 376703 68403659 ~ 68551466 (+) False LOC110501822
XR_005037655.1 mRNA downstream 16678 68963784 ~ 68968557 (+) True LOC118941448
XM_036954204.1 mRNA downstream 138247 69085353 ~ 69093075 (+) False st3gal2
XM_021569895.2 mRNA downstream 164957 69112063 ~ 69113805 (+) True exosc6
trnal-cag mRNA downstream 187677 69134783 ~ 69134865 (+) True trnal-cag
XM_021570013.2 mRNA downstream 219689 69166795 ~ 69176697 (+) False psme3ip1
TU200669 other upstream 66801 68860838 ~ 68861368 (+) True G176612
TU198304 other upstream 1439968 67486163 ~ 67488201 (+) True hsbp1b
TU198150 other upstream 1688273 67238890 ~ 67239896 (+) True LOC110494472
TU197931 other upstream 1955714 66955524 ~ 66972455 (+) False LOC110494451
TU197812 other upstream 2185956 66741820 ~ 66742213 (+) True G173938
TU200792 other downstream 9157 68956263 ~ 68957886 (+) True G176725
TU201174 other downstream 509452 69456558 ~ 69457433 (+) True G177067
TU201991 other downstream 1160180 70107286 ~ 70113440 (+) False G177812
TU203144 other downstream 1848304 70795410 ~ 70807904 (+) True igf1ra
TU204899 other downstream 3112611 72059717 ~ 72065195 (+) False LOC110495604

Expression Profile