RNA id: XR_005037655.1


Basic Information

Item Value
RNA id XR_005037655.1
length 2266
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC118941448
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 68963784 ~ 68968557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAGAGACTCAGTATTAGGAGCACAGCTAACACTCAGCAACAGGAATGCATATTTCATTATACTCAACTGGTTAGCGACCATTACTAATGAGCTGCATGTCTACCAGCTGCAGATGTAGAAACATttacactgtgtgtgtctgtgaattgTTGGTTCAGACTTCACACTGCCAGGGGCAATAAACAAATCATTCTGCTTTGCTTCCTCCCCCacatcccttctcctcctccctgctctgcctctctctatccctctgggcacccaagcagagagagaggaagaaaaatagagagagtgagagggaaagtgGGAGTAAGAAGGTGGAATGTTGAATGCAGCAGAACAGTGGACCTGATGGGTAATTCTGTGACTGAGCCTGAAGTTTTGGTTTGGCTGTGATGTGTTCTGCAAACACTGGCTCACACAAAGCAGGACTACATTGCCGCGCAGGACTACATTACCGCGCATGTCTACCTTACAGCGCGGGACTACATTACCGCGCATGTCTACATTACCGTGCAGGCGCAGAACTACCTTACCGCTCAGGACTACATTACCGCGCAGGACTACATTACCACGCAGCACTACATTACCACACAGGACTACATTACCACACAGGACTACATTACCACGCCAGTAGATAAAATGATTCAAGCAAacaaagggacagagggagcaTGTGGAAGCATGTAAGACGGCTTTTGAACTAGgagtgtgtgaaagtgtgtgtaacagagagagacagtgtgtgtggcaTGTCTGAGTAGTCCGCACCATTCCGAATTGGGGGTCAAGCTTGGACTTGAGGCTAGTGGGGCTCTTATCGGAGCTAGCTGTAATGCATTCCCAGAGATGAATCTTCTCCTGGTATCAGCAAGGCTATCACACTGCTGCAGATAGGTAGGTATCCCGCTCACCTAAACATAGCGACTCACGTCTTCAGGCCATTACACTAATTTAATTTGAGACTCCTCACATACATTCAGTGGTGAGTGAGTAGGAATGGTGCGCACTACTCAGACATGccacactcactgtctctctgttacacacactttcacacactcCTAGTTCAAAAGCCATCTTGCATGCTTCCACAtgctccctctgtccctttgtTTGCTTTAATCATTTTATCTACTGGCGTGGTAATGTAGTCCTGTGTGGTAATGTAGTCCTGTGTGGTAATGTAGTCCTGTGTGGTAATGTAGTCCTGTGTGGTAATGTAGTCCTGTGTGGTAATGTAGTCCTGTGTGGTaatggagtgagtgagtgagtgagtgagtgtggacACTACAGTGCTCATTTGTCTCCGTCCATCACTGTGATGGGGATTCTTAATCCCTCCTCTCCCATTGTGTTTCCAGGAGGTGAAGTGGGACGGTGATGCACCATAGGAGCTGATAACTCCAGCAGGAAGTGGAGCAGGGCCAGGTGAACCAGCCGAGGTCACAGACCTACCTCCAGGGGACCTCTGGGTCTTTCTAGAGATCAGACAGTGTACCTGTGCCCGCGGATGTCAGACTGGTCACACACCCCTCCCAGGGCAATACGGTGGAACTCCCTGCCCAGGGTACGGGCGATGGAGCGCCCCACACTGGTCTTTCCCACCCCAGGCGGCCCCACGAAGCACAGGATGGGCCCCTTGAGGGTGCTCTTCAGCTGCCTCACAGCCAGGTACTCCAGCACTCTCCTCTTCAGCTTCTCCATGGCATAGTGGTCACTGTCCAACAGCACCCGCGCAGCACGGATATCAAGACAGTCTGCAGAGACAATGCAGATCAGGGTTTAATTCCAACACCGTGAATATTGTCAAAGACCTTATCTAATGTCAACCAAGTGATTAAGATAACCATTCATCTAGATTGTAATAACAAGTATTGTTTTATGTCGCTACATGACTAAGCAGACATATGGTATGGACTCCCCTGTGTGGTAATGCTGAATCATCTAAATGTCCCCAATACTCTCAGTGTCTAATGACTGGCTATAGAGGACAAAGCAACCAGTGACAAAATATGATATTGAGCTCCCTCCAGTGGTAGAAGCCTTTAATTCCATTTTGAACAGAGAGTTCAAAAAAGAGAGCTGTGGTGGACTTCCTCGGGGTACACTTTGGTTTCTACCCCTTGTCCCAAAAAAATGCCCTATCCCATTAGAGATTTTCAAGGTATAACGTGCATATGATGTGCTCTGTATGTATGGATATGTACATTTCTAAGTTCAAAGAATAAAGTGTAAAAGAATAAAGAAATGAATCTGA

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0016558 protein import into peroxisome matrix biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0005782 peroxisomal matrix cellular_component
GO:0009295 nucleoid cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200791 lncRNA upstream 11374 68951347 ~ 68952410 (+) True G176724
TU200640 lncRNA upstream 152556 68810810 ~ 68811228 (+) True G176583
TU200540 lncRNA upstream 162505 68734696 ~ 68801279 (+) True G176494
TU200587 lncRNA upstream 167045 68796267 ~ 68796739 (+) True G176534
TU200538 lncRNA upstream 225492 68733873 ~ 68738292 (+) False G176494
TU200818 lncRNA downstream 10483 68979040 ~ 68979298 (+) True G176751
TU200820 lncRNA downstream 12775 68981332 ~ 69003884 (+) False G176752
TU200821 lncRNA downstream 12775 68981332 ~ 68993911 (+) True G176752
TU200882 lncRNA downstream 39841 69008398 ~ 69008682 (+) True G176801
TU200851 lncRNA downstream 101074 69069631 ~ 69085455 (+) True st3gal2
XM_036954134.1 mRNA upstream 16678 68928169 ~ 68947106 (+) False siah1
XM_036954143.1 mRNA upstream 16678 68928169 ~ 68947106 (+) True siah1
XM_021569834.2 mRNA upstream 17685 68920701 ~ 68946099 (+) False siah1
XM_036954156.1 mRNA upstream 17685 68920750 ~ 68946099 (+) False siah1
XM_021569790.2 mRNA upstream 54312 68883169 ~ 68909472 (+) True LOC110494586
XM_036954204.1 mRNA downstream 116796 69085353 ~ 69093075 (+) False st3gal2
XM_021569895.2 mRNA downstream 143506 69112063 ~ 69113805 (+) True exosc6
trnal-cag mRNA downstream 166226 69134783 ~ 69134865 (+) True trnal-cag
XM_021570013.2 mRNA downstream 198238 69166795 ~ 69176697 (+) False psme3ip1
XM_021570021.2 mRNA downstream 198248 69166805 ~ 69176697 (+) False psme3ip1
TU200792 other upstream 5898 68956263 ~ 68957886 (+) True G176725
TU200669 other upstream 102416 68860838 ~ 68861368 (+) True G176612
TU198304 other upstream 1475583 67486163 ~ 67488201 (+) True hsbp1b
TU198150 other upstream 1723888 67238890 ~ 67239896 (+) True LOC110494472
TU197931 other upstream 1991329 66955524 ~ 66972455 (+) False LOC110494451
TU201174 other downstream 488001 69456558 ~ 69457433 (+) True G177067
TU201991 other downstream 1138729 70107286 ~ 70113440 (+) False G177812
TU203144 other downstream 1826853 70795410 ~ 70807904 (+) True igf1ra
TU204899 other downstream 3091160 72059717 ~ 72065195 (+) False LOC110495604
TU204900 other downstream 3091160 72059717 ~ 72065195 (+) True LOC110495604

Expression Profile