RNA id: XM_021617980.2


Basic Information

Item Value
RNA id XM_021617980.2
length 2414
RNA type mRNA
GC content 0.42
exon number 7
gene id il34
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 68980410 ~ 69003899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGGTGGAGCTGGAGACGACCATATGGACATTGCGCAATTGATCAATATTCTCTCGTTTTGGAGTTCTGGGCCAAAGAAAGTGAGGCTTCAGGGATTTTCCCAAATTCGCGTTCGCCTAAAACGGGGGTTTTACTCTGGGTGTTGCTGCGCGCAGGTCATCTATTAAAGATGACATTGTTTCAATATCACTGACCAGTCACGCACGCGTGGTTTCCCAGCCTTGTAAGTAAGTCGTTTGTGTGAACCATGTGTGCTTTTGGTCgctgctgctgatggtcattctgAAGATCACAGAGTGTTGAAGTTGCGAGTTTATGTGGAGTTACTGCTGGGATTGTGCAGGCTAACAAGGAGCGAGAAGGACCTTGTGGTGCTCTGGAAAAGTGTGTGATCTGAGTCGGAGGCCTCCAGCGTGTTTAAACGGGCATAAATTGGAGTATGGTCCGGTCAACAGCCTGGCTCCTGGGAGCTCTATTGGGTTTGATATGTGTACTACCTCTTGTTTTGATGACACCCAGAACTGCCCAGTGCACGTCTTTGAAGACATTGGAAAACAAACTCATAGGCAGAAGACGTAACATGAAACACAATTTACCCATTAATTACACCATCAGAGTTCACTATGAGGAGGTCTTCAAACTCAGCAATATCAGCAAGCTGAGGGCGAGGGTGGAGGATCTGGAAGACGGGGACCTGCAGGATGTGTGGCTGTTGGTCAACCGGGAGGTGTTGAAGAGGATTCTGAGGGTCTTGCCAGTGAGACACCCCTCCTACAAGTACACCACCGACCTGGAGGATCTCTTCAGGAAGGTCCAGCAGGTGTTCCCACCACAGACTGATGAGAGAGAGCCACCAGAGCGAATAGAGGAGATCTACAAAAGGGTTAAGGAGATTGACTCAAAAGGCTGGAGGTTCGTGACCCCCAAATCTCTGTTGGATAACTGCTATCGGACAATGCACTGTCTCTTCAAAGACTGCTTTTCCAGtgaagacagagagcaagacTATTGTGGCTTACCTCACTGGCGGAAGGGCAGAAAGAGACTACAGTAAACCTGAGAAGGGCGCTATTGTTTTCATAtgtatatttataatatattgTCTACTGATGTTTATGTTCTGTGTTTTGATTGCGGGTTCTAGATGTGTTTAGACAGTTGTATGGTATAGGGCAGGTGACTATGCTCAAGCAGAGCGCGATATAGCATTTCTATTttaattattttatatttttttgcaatCAGGGAACACTTATGGCTGACATAGGTATTAGCAACCGTTGCCCATAAAAGTAAGAACACAAACATAGCCAGCTACTCTCATCTCTGACTGTTTGTCTTTATGAATATTATAGTAAATGTGtttgtttaaaaatgttttttctctgttctgTTTTTTATCAATTGCTTTAAGGTGTTTTGCTGACTTGCAGGCATAGTCAGTGAATTCCAGCCACTCATTTGTTTGGCATTATGCACATCGATGCTGAAATAAAGATATTATTTCTGAAAATCTATTCCAGGTTCAACGAGTTAATTTCTGCAGTATGATTGCTTGTGGTCAGATTACATCAGATGTTTATGTAAACGAGattgtttacatgcacactaataattggatattaaactgattatggcagtagaCAGATTACGCAATAATCATGTCACAccttactctgtttatcttaatcGGTTTGAGGTCAAAATGGAAAAACTTAAAACggctggttttctgagcaatctttcaaattattaggacatgtaaacaccttaatcGGTGTTCCAGTAGTGTATTTGATCCGCGCATGTGCTAGCACCAGCCGAGCGAGTCTCCTTTAGCGATGGCTAAAGTTAGCTGTAGTTTTCTAATGGCTGTTTAAATAAAACTGAAGCATGGATTCGTTTTTCCTGACCCATAGACTACTTTCCGGGTGAGGAAATatctaacatcaagttgtaaaatagCGAACTACTCCTTTAAGGTGTCTACCGTTTAGAATCCttagttcactgcagctagcgactggaacaagctgcaacaaaacACTAACTGGACCTTttcatctccatctcttcattcaaagattcAAATCATGGACagtttactgacagttgtggctgcttcgcgtggtATATTGTCTCTATCTTGCCCATTGTGCTGTTGTCTTTGTACCATgatttgtgctgctaccatgctgtgttttcatgtgttgctgttatgttgtcttaggtctctatgtagtgttgtggtgtctctcttgtcgtgatgtgtgttttgatatttttattaaatgtttgatttttaATCCGAGCCCCCGTCCCAGCAGGGGggcttttggtaggccgtcactgtaaataaaaatgtgttcttaactgacttgcctagttaaataaaggtaaactatATATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201274 lncRNA downstream 953 68978979 ~ 68979457 (-) True G177154
TU200774 lncRNA downstream 65127 68915008 ~ 68915283 (-) True G176712
TU200750 lncRNA downstream 86720 68885939 ~ 68893690 (-) True G176688
TU200727 lncRNA downstream 118959 68861177 ~ 68861451 (-) True G176668
TU200723 lncRNA downstream 123671 68856535 ~ 68856739 (-) True G176664
TU201312 lncRNA upstream 45121 69049020 ~ 69106218 (-) True G177192
TU201341 lncRNA upstream 108368 69112267 ~ 69113991 (-) True LOC110494649
TU201365 lncRNA upstream 112968 69116867 ~ 69117163 (-) True G177244
TU201393 lncRNA upstream 191642 69195541 ~ 69195986 (-) True G177272
TU201328 lncRNA upstream 306612 69310511 ~ 69311709 (-) True G177207
XM_021569803.2 mRNA downstream 2712 68951337 ~ 68977698 (-) False lonp2
XM_021569811.2 mRNA downstream 2712 68951337 ~ 68977698 (-) True lonp2
XM_036954048.1 mRNA downstream 787517 67666186 ~ 68192893 (-) False cdh13
XM_036954055.1 mRNA downstream 787517 67666186 ~ 68192893 (-) True cdh13
XM_021569702.2 mRNA downstream 1456619 67491429 ~ 67523791 (-) True zgc:173742
XM_021569841.2 mRNA upstream 5951 69009850 ~ 69051084 (-) False sf3b3
XM_021569849.2 mRNA upstream 5951 69009850 ~ 69059398 (-) True sf3b3
XM_021569882.2 mRNA upstream 92843 69096742 ~ 69111871 (-) True aars1
XM_021569909.2 mRNA upstream 109881 69113780 ~ 69128027 (-) False LOC110494649
XR_005037658.1 mRNA upstream 110597 69114496 ~ 69128035 (-) False LOC110494649
TU198454 other downstream 2287560 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 2589644 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 2642024 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 2682096 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 3058181 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 587236 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 689710 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 1556623 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1765259 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1901473 70905372 ~ 70906254 (-) True G179215

Expression Profile