Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021569849.2 |
| length | 4546 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 27 |
| gene id | sf3b3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 69009850 ~ 69059398 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| id | description |
|---|---|
| K12830 | SF3B3, SAP130, RSE1; splicing factor 3B subunit 3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU201274 | lncRNA | downstream | 30393 | 68978979 ~ 68979457 (-) | True | G177154 |
| TU200774 | lncRNA | downstream | 94567 | 68915008 ~ 68915283 (-) | True | G176712 |
| TU200750 | lncRNA | downstream | 116160 | 68885939 ~ 68893690 (-) | True | G176688 |
| TU200727 | lncRNA | downstream | 148399 | 68861177 ~ 68861451 (-) | True | G176668 |
| TU200723 | lncRNA | downstream | 153111 | 68856535 ~ 68856739 (-) | True | G176664 |
| TU201341 | lncRNA | upstream | 52869 | 69112267 ~ 69113991 (-) | True | LOC110494649 |
| TU201365 | lncRNA | upstream | 57469 | 69116867 ~ 69117163 (-) | True | G177244 |
| TU201393 | lncRNA | upstream | 136143 | 69195541 ~ 69195986 (-) | True | G177272 |
| TU201328 | lncRNA | upstream | 251113 | 69310511 ~ 69311709 (-) | True | G177207 |
| TU201438 | lncRNA | upstream | 260163 | 69319561 ~ 69319944 (-) | True | G177315 |
| XM_021617980.2 | mRNA | downstream | 5951 | 68980410 ~ 69003899 (-) | False | il34 |
| XM_021617991.2 | mRNA | downstream | 5951 | 68980410 ~ 69003899 (-) | False | il34 |
| NM_001257301.1 | mRNA | downstream | 14805 | 68981537 ~ 68995045 (-) | True | il34 |
| XM_021569803.2 | mRNA | downstream | 32152 | 68951337 ~ 68977698 (-) | False | lonp2 |
| XM_021569811.2 | mRNA | downstream | 32152 | 68951337 ~ 68977698 (-) | True | lonp2 |
| XM_021569882.2 | mRNA | upstream | 37344 | 69096742 ~ 69111871 (-) | True | aars1 |
| XM_021569909.2 | mRNA | upstream | 54382 | 69113780 ~ 69128027 (-) | False | LOC110494649 |
| XR_005037658.1 | mRNA | upstream | 55098 | 69114496 ~ 69128035 (-) | False | LOC110494649 |
| XM_021569961.2 | mRNA | upstream | 79218 | 69138616 ~ 69140871 (-) | False | LOC110494669 |
| XM_021569974.2 | mRNA | upstream | 79218 | 69138616 ~ 69140871 (-) | False | LOC110494669 |
| TU198454 | other | downstream | 2317000 | 66692408 ~ 66692850 (-) | True | G174505 |
| TU197536 | other | downstream | 2619084 | 66375226 ~ 66390766 (-) | True | G173696 |
| TU197514 | other | downstream | 2671464 | 66335412 ~ 66338386 (-) | True | G173675 |
| TU197458 | other | downstream | 2711536 | 66277821 ~ 66298314 (-) | False | LOC110494122 |
| TU197229 | other | downstream | 3087621 | 65921850 ~ 65922229 (-) | True | G173431 |
| TU201626 | other | upstream | 531737 | 69591135 ~ 69591722 (-) | True | G177487 |
| TU201996 | other | upstream | 634211 | 69693609 ~ 69704399 (-) | True | LOC110494902 |
| TU202994 | other | upstream | 1501124 | 70560522 ~ 70560855 (-) | True | LOC110501848 |
| TU203498 | other | upstream | 1709760 | 70769158 ~ 70772536 (-) | True | fam169b |
| TU203550 | other | upstream | 1845974 | 70905372 ~ 70906254 (-) | True | G179215 |
