RNA id: XM_021569922.2


Basic Information

Item Value
RNA id XM_021569922.2
length 3543
RNA type mRNA
GC content 0.48
exon number 15
gene id rspry1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69141148 ~ 69166663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTGTGATGGGTCTAATTTTCAATAGCTCACTCTCCATATGAGCTGCAGATCTACAGCCAATTGCGGTGGTTTCTTATCTTATCAAATGGACATCtttttttttcaaaattcctCCCTGTTGATTTTCTACAAATATGTATTATATTACAGCTGTGGTTATTCATTTACGTACAGATCAAATGTTCAATAGCTTCCAGTCCAAATTACATATACATCTAAAATCACTTGGGGTTAGGTCTCTGAACTCCCTCGTCCATAGTACCAAAGACACTCGTTAAGAAACAAAAAAATTAACTAAAGTTGTTTAGAAACTCGTGCTGCCGTATCAAGCTACTCCGGTCCTGGTGACAGCTGATCAGATGGGGGATAGCCGACACTACGGAACTAGCTATCCGTACAGCCGTCAACGAAATCAGACAAAGGGGTGTGAGGAAGTAAATGTTTTACACGATTGAATCAAGAAGGAGTGGATTAAATATGAATGTTAACTAGCTTGTTAGCTTATTTTGTTGATAGCTACCGTGTTATCTAGCAAGGTAGGCTacacgttagctagcgagcctaACGTAAACGCTTTTTCCCTAAAGCTTTTGAGGCCTGTTCATCTCCTGACAGTTTATTTTATAGTTCTTTAACCGAGGACACAACTAGCTCATTTGCGAGCTATCTGCCATCCGCAGCAGCAGGATGACTGACGTACCCATCCGAATCATCATGAGACGCCTCCACCAGGGCTCCAAATGATATGATAGTAGCTAGCTGGATTGCATTCTGTGCCAGCAGGAGCCTTGTGCAGGTTCTGCTGCTCTCATTGGAGCAGTTATCACTAGGGTTTTGGGAAAGCCTTGAGACATCCGGGACTATGGGAAACAGCTGCGTTTGTAGAGAAGAAAGTGACGTGGAGGATGGATCCGCAACTCGCAGGCAACTCAGGCGAGTTGATCACCCCGCTGCCGATCCCCCTGAGGCACGAAGCAGTCGGCCCCGGGACCCTGTCAGACCCCCACGGCGTGGCCGGGGACCCCATGAACCCCGCCGGAAGAAACAAAACGTGGATGGGTTGGTGCTGGACACACTAGCTGTGATCAGGACTCTAGTTGACAAcGACCAAGAGCCCCCCTACTCCATGATCACGCTGCATGAGATGGCAGAAACGGATGACGGCTGGTTGGAGGTGGTCCAGTCTCTGATCCGGGTCATACCGCTGGACGACCCACTGGGACCAGCTGTGATTACCCTGCTGCTTGACGAGTGCCCACTGCCCACCAAAGATGCTCTACAGAAGTTGTCTGAGATGCTGAGCTTGAGTGCCACTGTGGCCCGCCAGGATGCCATCATCCCTTCTAAGCACCGCAACACTACTGCTGTACTGGGCTGCCTGGCTGAGAAACTGGCTGGTCCAGCCAGCATTGGACTCCTGAGCCCTGGAACTCTGGGGTACCTGCTGGAGAGCCTGAGTTCTGAGGCCCATCCTACTGTAATGCTCTTTGCCCTCATAGCCTTGGAGAAGTTCTCACAGACCAGTGAGAACAAGCTAACAGTGTCTGAGTCGTGTATAAGTGAACGACTGGGGGTTCTGGAATCGTGGGCTGACCACACAGACTACCTGAAGCGCCAGGTCGGCTTCTGTTCCCAATGGAGCCTAGATAACCTCTTCCTGAAAGATGGCCGTCAGTTCACCTACGAGAAGGTGAACTTGAGCAACATCAACGCCATGCTGAACAGCAACGACGTCAGCGAGTATCTCAAGATCTCTCCCAGTGGACTGGAGGCGCGCTGCGACGCGTCCTCCTTTGAGAGTGTCCGCTGTACCTTCTGTGTGGACTCAGGCGTGTGGTACTATGAGGTCACAGTGGTCACCTCCGGGGTCATGCAGATTGGCTGGGCCACCAAGGACAGCAAGTTCCTTAACCATgagggTTATGGGATAGGAGATGATGAATACTCGTGTGCATATGATGGCTGCAGGCAGCTAATCTGGTACAACGCTCGCAGTAAACCACACTCCCACCCCTGCTGGAAAGAGGGAGATGCCATAGGTTTCCTACTGGACCTCAGTAAGAAGCAGATGCTTTTCTACCTGAATGGACATCAGCTCCCCTCAGAGAAGCAGGTGTTTTCCTCTGCAACGTCTGGCTTCTTTGCAGCAGCAAGTTTCATGTCCTACCAACAATGTGAGTTTAACTTTGGGGCGAAGCCCTTCCGCCATCCCCCGTCTGTCAAGTTCAGCACCTTCAATGACTTTGCCTCACTGGCGTCTGATGAGAAGATTATCCTTCCCAGACACCGGCGCCTGGCCCTGCTCAAGCAGGTGAGCATCAGAGACAACTGTTGCACCCTCTGCTGTGACCAGATGGCCGATACAGAGCTGAGACCCTGCGGACACAGTGGGATGTGTATGGAGTGTGCCTTACAGCTGGAGACGTGCCCGTTGTGTCGCCAGGACATCCTGACCCGTGTCAGACTCATCTCACATGTGTCCTGACACATCACCTTCAAACCAGGACATGAACGCTCCTCCCCTCCTATCACCTTTATCCCAGTAATCAACCCGACCAATAGGACTGTGAGGCTGTGCCAGGGTTCCTGATCGGACCCTGGGCCTAATGTGAGGAGGGAGTGATGGGacctgacagagctccaggaGAGATACAGTGTGGGGGATAGTGTAGGGAGAATAGGACAAGGAGGGGTAACCCTTTCTTCTGCTGCACTCCATGGCTTGTTCTCTCTGTGAGGAGATGGGGCCCCACACCCCGTCTGGGAGCAAAAAAAGTGCTTGTAGAGTGAGGGGGCAGTGGGAGGAAGACAATTAGAGACATTACCAGGCAGCAGCATTTCCAGAATCACCCCATCAATCTTAATGTCATAAACTCAGTGTCTGCACATGGATCTGCCTAATGTTCCCTCTCTTAGGCTCTGGTCAATATGTCCTGTGTATCTCTGCTCAGAGGTTTTACATGTATCTGTGATTCTCTTGTTTTATTCTGACTAAACGTAAAGGCACAACAATGAAGAGACAGCCTTGGTTGGTTCAGTTGGCTGAGACAATGATGTTAAGGCCCTGCTCGATCATACAATATTAACTGAGCACAGatttgtccctctctcctctacttgaAGCATTTCTGGGTTGAGTAACCATGCTGTTATAAATGAGATTGAACATTTTATGAAATAACTGTTACACAAAATATTATTATCTACAATTCAAACAAAATGTAATGAAATTGGGGTTATTGAAATCACAGCTAATCACATTTTAATTATAGGGTTATATGAAGTGGTTGTGGAAAATCTGAAGGTACTACATCTCAATCAATACGAATGACTACATTTGGCCACAGTGTGTATATATGGAGGACCAGTTGTCTCCAGTCCACTCCTGACAATGATTTAGTCATGGAAGAAATTAAGAGTTAAACGTTCAATTGTATCTGTCTTTAATGGAGTAGCCCCAGGGGTTACAAAGATGTGATTTACTGAATAATCATTGTTTTCTGGGTTATGATAATtgtaataaatgtattgtgttgCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201365 lncRNA downstream 23985 69116867 ~ 69117163 (-) True G177244
TU201341 lncRNA downstream 27157 69112267 ~ 69113991 (-) True LOC110494649
TU201312 lncRNA downstream 34930 69049020 ~ 69106218 (-) True G177192
TU201274 lncRNA downstream 161691 68978979 ~ 68979457 (-) True G177154
TU200774 lncRNA downstream 225865 68915008 ~ 68915283 (-) True G176712
TU201393 lncRNA upstream 33258 69195541 ~ 69195986 (-) True G177272
TU201328 lncRNA upstream 148228 69310511 ~ 69311709 (-) True G177207
TU201438 lncRNA upstream 157278 69319561 ~ 69319944 (-) True G177315
TU201445 lncRNA upstream 163267 69325550 ~ 69326260 (-) True G177322
TU201446 lncRNA upstream 164025 69326308 ~ 69326828 (-) True G177323
XM_021569970.2 mRNA downstream 166 69138616 ~ 69140982 (-) False LOC110494669
XM_021569983.2 mRNA downstream 166 69138616 ~ 69140982 (-) True LOC110494669
XM_021569952.2 mRNA downstream 258 69138616 ~ 69140890 (-) False LOC110494669
XM_021569942.2 mRNA downstream 262 69138616 ~ 69140886 (-) False LOC110494669
XM_021569961.2 mRNA downstream 277 69138616 ~ 69140871 (-) False LOC110494669
XM_036954280.1 mRNA upstream 16750 69179033 ~ 69199760 (-) False cpne2
XM_021569993.2 mRNA upstream 16750 69179033 ~ 69205373 (-) True cpne2
XM_021570054.2 mRNA upstream 45140 69207423 ~ 69229539 (-) False nlrc5
XM_021570046.2 mRNA upstream 45140 69207423 ~ 69229555 (-) False nlrc5
XM_036954356.1 mRNA upstream 45140 69207423 ~ 69229555 (-) False nlrc5
TU198454 other downstream 2448298 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 2750382 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 2802762 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 2842834 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 3218919 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 428852 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 531326 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 1398239 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1606875 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1743089 70905372 ~ 70906254 (-) True G179215

Expression Profile