RNA id: XM_036954356.1


Basic Information

Item Value
RNA id XM_036954356.1
length 6505
RNA type mRNA
GC content 0.49
exon number 48
gene id nlrc5
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69207423 ~ 69229555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGAAAACCACTCAAAAACGAAACTGAAAGTAAACGCATTTTATTTGGTTTGTTTCACTTTATTGCAGCGATGCGACCAACGACCAACAGCTACATTTGCATAAACTTGTACAGCTGATGGAAGCAGAGGAAGATGTCCAGAGTGTATTAACACAAGAGACCCATGAGCTGGCAGACATTCTGGGCTATCAAGATGATGCAGTTCTCTCCAAACTCTATAAAGTGATGGACAGCAGAGCGCGGGAACGGCTCGTGCGCGCTGCCAGTCACAGAGAACGCATCCTGGAGATGTTGGGTTACTTCAGCACAGCAGACCCTGCTATGTGCCGCCAATTTCTTCAAATGGTCTGCATGCACTGCGACATGCCAATGCGCCTGGAATCTCGGCTGATGTCTGTGACCGGATCTGTGACTAGTGATCCTTGGCCTACACTGGCAAGAGAGGCCCTATCCCTCTGTGATCCAGAAGTAATTGAAAACAACAGCCATACCCTGGTTGATGAGTCTATAGCATCTCAAGGTTGGTGTGTAAAACGCCCACGAATAGACCACGTAGAAAGCTACAAGGCTGCTGTGAGGAGATTTCTACTGCAGAGGTGGGAGAGGGTGATGCAGGGTGTGGTGAAGGAGGTTCGTCTGGAAGAGGCCTGGGTCAGTCTGCGCCACAGAACCCATGTTAGACCCAGAGAAAGGGCTGATGGAGCTCTGAGCCCCTCAGAGCTTCCACAGGGGGACGAGGAGGGGACTGTGGAAGACAGGGTGACTGTTCACTCCCTCCTAGGTTCGGAAGCCCAGGTCACACTGCTGTTAGGCCAGGCAGGGTCAGGGAAGACACTACTGATGCACTGCCTTGGCCAGAAATGGACACAGGACGCCTCTCCCTCCTTTCACCTACTGATCCTGCTAGAGTTCCGCCAGCTCAACCTTGTGGCTCGGCCGCTCTCTCTGAAGGAGCTGCTCTTTCGCTTCTTCCTCCCAccagagggtggggaggaggagtgTACCGCTGTACTTGACTTCATCCTTGAAAACCCTGAGAAAATATGCTTGATCTTTGATGGCTACGATGAGTTTCACACTAAAATAACCCACTCAGGGAAACTGAACAGCTCATTTGACCCACTGTGCCCACTCCCCATGGCAGAGCTGATCTCAGGCCTGTGCAGTCGCAGAATCCTCCCAGGATGCACTCTGTTGATTACCTGCAGGCCTCGGGATGTGACAGACTTGGAGAGCTCTGTGGACTGCATTGGGGAGCTGCTAGGTTTCAACCAGCGCAGTGTGAAGGAATATGCTGAACAGTACTTCCAGGACAAGGGTCTAAATCTGAAGGAGAAGGCAGTGAGTCATCTACTGGCCAACCACCACCTCCTCACCATGTGTTACCTGCCAGCCCTCTGCCATATCTGCTGTGTGTGCCTGGATCACATATTCTCCAGTGGTGGGTCTGAGCTTTTACCCCAGCTTCCAAACACCCTCACCCAGGTCTACCTCCAGATCCTCTGTGCCTTTCTGAGCCGATGCCCAGGGAGCAGCACACCCCTGTTGCAGAGTCACAgggcagaggtcacactgctgggCCGCCTGGCCATGAGGGGCCTGGAGGGGAGCAAGATTGTGTTCTTGTCTGAAGAGGTTCCACCAGACCTGGTGGACTTCGCCACTAAGGCTGGTCTCCTCTCACAGGTGGACCTGACCCATGAGGATGGATCTAAAGGCCAGGGCTACACATTCATGCACCTCACCATGCAAGAGTTTCTGGGCGCGCTACACATCATGACCAGCGACGACATCACAGAGGCCCAGCTCAGGAAGAAGTTCAACCTCAAGACCCGCTGGACCACGAAATCAAACCCCAAGACGGTTTTCACTGACTCCCTCCATCTGTATGTTTGTGGGCTTGCTGCACCAGCCTGCTTCTCTTACCTGCTTCAGCTTGTTCGGGGAGATGGGGCTGTGGCGTGGGTGAAGAAACGCCTGGCACTAGTTCGCAAGTTGCTCCGAAGCCTGGCAATGAGCACCAACCTGACTGGGCCCAAGGTGGTGGAGCTGTGCCACTGTGTCCAGGAGACCCAGGATGCCCAACTGGCCAGGGAGATGGTGGGGTCGCGACCCTCCTTCGAACTAAGGAACATCACATTGAACCCTGTTGATCTGGATGCCCTGGCCTTTGTCGTCTCGTCTGCTGGAGTGGGCATCGGGTTGGACTTTGGAGCCTGTTCTATGGAGCTGGAGTGTCTCGATATTCTACCCAGCTGCCAGCACATCGACTTTCTAATTTTTCGAAGCCGTAAGTATGATGACAGATTTGCAGATAAACTTTCTTGCATCCTTCCCAGACTACCAACCCTGAAAAGATTTGAGTTTATCTGTGGTAACCTCACTGATGTGGGAGCTGCCAAACTTGCCAGAGCCCTGGAGAGCTGTCCACAGATCACAGAGCTCAATTTCAGTGACAACAGCCTGACAGACAGAGGAGTCAGGGAGATCGCTGACATCTTTCCCAAGCTGCCCAGTCTGGCCTCTGTCTCGTTGGGGAAGAATGGCTGCTCTCTGGAGAGTATCTACATCCTTCTAGAGAAGATCACTTCCAGCCCCTCCATCCAGGGACTCTATGCTGAGGGAATGAAGGACGTCAGTGTCCTATTTGTCCCAAGCGTAGACATGAAATGTTCTATGGATAAAACTGGACTGACTGTCAGCCTGTTGAACTGCAGATTCACTACTGACCAGATGAACAGACTGTGTCAGTTGCTAGTGAGATGTCCTGGTCTCTCTGTCCTGGATCTCTCAGGAGCCGACATCAAGGATGATACTCTCAAGGCCCTGACTGACTCTCTACAGGAGCTGAACATCTCCAAACAGATTGTTCTGAATGAGATTCCCATATCTGTTGATGGGTTGATGGTTCTGACCAGTttcctgtctgtatgtcctgATGTGGTTCAAGTGGACATCAGCCTGCAGGACCCTGTGCGTGTGTCTATACTTTTTGCTGGGGGGATAGAGAAACAACATCCTGAGATGTCTAAGAAACTTCGTCTGATTGGCTGTGCTCTTCTTCCCCCTCACTTGGACCATCTGTGTGAGAATCTGACGGACTGCTCTGCTCTGACTCTGCTGGATATTTCCAACAATTCTCTGGGAAACAAAGGTCTAAAGAAGTTGTTAGACCTCTTACCTCAGCTTAGCAACATCCAGGAAATCAATGTCAGTGAGAATGCAGTTAGCATGGAAGGGGTGGTGCTGCTAGCTGACACGCTCTGCTCACACAGGAACATGAGCGAAGTGAATGTCAGTCAcggggggaagaagctgttcctGAAATTCCATTCCAGTAAAAGAATACAATCagaagcactcaggacctcaccAGATATGGAACAGGATAAGAAACTCAGtcTAACTCACAGTGATATCCAGCCCACTGACATGACCAGGCTGTGTAGAAGACTGGTACAGTGTCCCGGCCTACTGAAGCTAGATTTCTCCCATGGATCCCTGAAGGACGATGCCATTGAAAATCTATTGAATATCCTGCCTAAGATGACATCTCTTCAGCTGCTCAATATGAGCCATGTCCAGATGTCTACGGACGGAGTGTTGTTATTGGTCAGATCTCTGATAGACTGTCAGCGTGTCAGAGCTGTGGAACTCAGGCCCCAAGGAGAAGCGTTCATCAAGTTTGTCAACATGAAAGCAGAACAAGCAACTTGCAGACTCACCCAGTACACACTGAGCAGTGGGGATGTGGAGAAACTCTCTGGGATCCTGGAGCAGTGTCCTCATTTGTCTGACCTGGATTTATCCAGTAACCTCCTGAGAGACGAGGGAGTGAAGAGCTTTGTGGATTCTCTGCCAAGGCTGCGGATTGCCAGCTCAGTGAATCTTAATGATAACAGACTGACCCAGATGGGGGCGCTCTACCTGGTGAACACAGTGATGACCTGTGAGAAGGTGGCTGCAGTTGAAGTCAGTTTGGGAACTGAGGAGAGGTCGGTCATCCGCTTTGAACAGGACAGTGACTGTGGCAAAACTCTGAGTCTGAGAGAGTGTCATTTTGGGGCTGACCATCTGCAGAGACTAGCAGAGATTCTGACACGCTGTGCTGCTCAGTTGGTCAAGCTGAGAATAAGAAACAACGGACTGAGTGTTCAGGTGATTGAAGACTTGGTGAAGCAGCTGAGGTGTGGTCACGTCCAACGCTACATCAGTATTGAGGAGCCATGGATCACAGCAGAAGCAGCTGTAAACCTGCTCTCCTGCTGCTTGAACCTGAACCCCAACATACACACCATCGGGGTCAATAATTCCACTGTACACATTACTTTGGAAGAATGCCAAAATCCCACTGCTACCAGTGGTGGCACTTCTACAGACATGTCTGGCTCTCTGTCTACGGTGACCATAAGCCTGGTAGACTGTGCAGTGCAAGGGCACCACCTAGTGTCTTTGCAGACTGTGTTCCAGAGGTGTGTTCTGCTACAGGAACTAGATTTGTCATACAACAGCATTGGTAGAGTGGGAGCAGAGTTCCTCTGCTCTGTCCTACCATCCTTAGCTAGTCTGCGGAAACTCAGTCTTGAAACAAAAGAAACCTCTGAAGATGTGGTATTGCTCCTTGCCGAGGGGTTGTTGCAGGCTAAAAGCATTGAGAGCTTGAATTTGTCTGGTCATATGATTACTGACAGAGAAGCTGTAGCTCTGACCAGAACACTCCAAAACCTTCCTCATCTCAGAACAATCAATCTGTCCCTCTGCTATGGTTGGACACCAGCAGGGGCCTTGGAGCTGGTGAGAGGGCTGGGACGGTGCCTCTCTCTGGAAGGGATCAgCCTTGACTCTGTACAGCTGGATGAGGAGAGCACAGTGTGCCTGGCCCAAGGTCTCCATGCTATGACCTCCTTGAAGAGGCTGAATCTGAATAAGAAAGTTACCATGGTGACTGGATCCCCATGGGTGGGGGCCACTCTGGTCCTGCTGGCCTCTCTGGAGGGGCtcagagggatggaggagctAGAGTTGGATGGGATGAGGATTTCAGATAATGGAGTGGAGGAGCTTATCAAACACCTGCCCACCTGGTCAGGCCTGAGGAAGATCAGCCTGTCAGGGAACTGCATCAGTGACCAAGCAGGAGAGAGGCTGGTCCAGGCCCTGACAACCTGCACAGCACTGGAGGAGCTCAATCTGTCAAGGAATAATCTCAGCCTTGCCTGTGCTGCCAAGATGGGACAAGTTCTGCCCACTCTCACTCACTTCAGGGTTCTAGATCTCTCAGAGAACGAGATTGGTACAAAAGGATCTGTCAGTATCTCCAAAGCCTTGATCTCCATGAAGtatttgacaaagatacaCTTGACCTCCATAGGGACTTCAGAGCTTGCTGGTCTGGCTGACAGCCTGGCTCACTGTGTCTGTGCAGAGGATGTCAGTTTTGCGTGGAATGATTGTGGCGATGATGTCGCAGTGAAGCTTGCCGAGGTTTTACCACAATGCCAGAAGCTAAGGAGACTTGATCTAGAGTCTAACAGTATCAGCACTATTGGAGCAGAGGCACTTGCCAGAAGCTTACACTCTTGTCCATCAGTTGAAGTGATCAGACTGTGGAGGAATTTTATTTCTACCAGTGATGCCCAGAaactgagacagagggagaagaggcTCAACTTCTCCTCCACATAGTCTAAGATCTAATCTCACTCATTCAGTGTGTCAGCAGAACAGTAAACTTGcacttttatttttgttttatgcACTTAAAGTTGATTTTGTTTACATGTCATCAAATTCAAACAAACAATAATATcatccaggaggaggaggaacagtgAACCTTTATTCCAACCCTGGTAAGAGGATATAAGAGACAAATCTCCCTTTATACatcttccttcctcttcctggACAATCGGCTCATAGTCTCTTTCCACTCTCGTATTTATTTCTGGATTAATTTTGAATCAGGAATTTATTGATTGTTTGTGTTTTGCTAAAAACAAATATCCACCTCAGGTAGAAAGTGTGAGCAAATGACAAACTAATAACTCAAGTTTATGCTTCAGGTGTTCCCGCTCTCTATCTTGGTTTGTAAAACTTGAACTATTTATGTGATGTTGATCTCTCCCCAAATGTTAACTAAGCATTGAGGTAGAGTTGAAATATTGTTTTTCTGATGGAAGCCACTGCTTGGTGTGATTTTTATTTCTTACACTTTAGTTCTCTTGCACTGCTGGGTTCTAATGTCACTGCTCATggttcactgttatgtcattagATGTATTTCTGCTCATCTGCTAATTTATTTCTTATTCCTCACACTTGTTTTTGTAATGTTCATGTTTTAATCTCACATGCACTTTGGTCTAATAAAGTGTGAGACGTCTTTTTCATATTCCATGTAAATAGGGATTTTCTTTATCTGAACATACCTCTAGATGGCAATATACtcaacaggaggttatattgttaATCAGTAGGGGAAATAAACTGGGTGCCTTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201393 lncRNA downstream 11437 69195541 ~ 69195986 (-) True G177272
TU201365 lncRNA downstream 90260 69116867 ~ 69117163 (-) True G177244
TU201341 lncRNA downstream 93432 69112267 ~ 69113991 (-) True LOC110494649
TU201312 lncRNA downstream 101205 69049020 ~ 69106218 (-) True G177192
TU201274 lncRNA downstream 227966 68978979 ~ 68979457 (-) True G177154
TU201328 lncRNA upstream 80956 69310511 ~ 69311709 (-) True G177207
TU201438 lncRNA upstream 90006 69319561 ~ 69319944 (-) True G177315
TU201445 lncRNA upstream 95995 69325550 ~ 69326260 (-) True G177322
TU201446 lncRNA upstream 96753 69326308 ~ 69326828 (-) True G177323
TU201456 lncRNA upstream 135557 69365112 ~ 69365852 (-) True G177333
XM_021569993.2 mRNA downstream 2050 69179033 ~ 69205373 (-) True cpne2
XM_036954280.1 mRNA downstream 7663 69179033 ~ 69199760 (-) False cpne2
XM_021569929.2 mRNA downstream 40760 69141148 ~ 69166663 (-) True rspry1
XM_021569922.2 mRNA downstream 45140 69141148 ~ 69162283 (-) False rspry1
XM_021569983.2 mRNA downstream 66441 69138616 ~ 69140982 (-) True LOC110494669
XM_021570075.2 mRNA upstream 6101 69235656 ~ 69250282 (-) True LOC110494745
XM_021570086.2 mRNA upstream 21732 69251287 ~ 69265604 (-) False herpud1
XM_021570093.2 mRNA upstream 21732 69251287 ~ 69265605 (-) True herpud1
XM_021570104.2 mRNA upstream 36850 69266405 ~ 69274547 (-) True slc12a3
XM_021570137.2 mRNA upstream 47423 69276978 ~ 69308622 (-) False nup93
TU198454 other downstream 2514573 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 2816657 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 2869037 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 2909109 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 3285194 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 361580 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 464054 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 1330967 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1539603 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1675817 70905372 ~ 70906254 (-) True G179215

Expression Profile