RNA id: XM_021570086.2


Basic Information

Item Value
RNA id XM_021570086.2
length 3547
RNA type mRNA
GC content 0.47
exon number 8
gene id herpud1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69251287 ~ 69265605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCGCGTGCAATTCAGACTGCTCCCGGAGCAGGAGCCTCCACGTCTGATCACGAGCCTTGGTTATCCAATCACAGCAAGCCACCGGGTGTTTCCAAACAACATCCCCTTTCACAGAACTACAGGCTGTGTAGCTAGCTACTTACTTCCTCATCATCTCAACTAAAAAGTTGTCGGCTGAATAAATTAATTCCTACTTTGTTTATCTGACATTTTAGCTAGATGATTAGATGCTGTAGTTACTTACTCCATTTATATTACAACTAAGAGGTCGCGTTGGAGAGGTCACAAGAAAACAAAAATGGACAACAGTGGTTTTCCTAACGTTAGACAAAAGACAATCACTCTTGTGATAAAAACACCGAATCAAGCCCACGGGGATCAGACGATTGAAGGAGTTGACACGGACTGGACAGTGAAAGAGTTGAAGACTCATTTATCGAGGGTGTACCCAAATAACCCGACTGAAAGTGATCAGAGACTTATTTACTCTGGCAAGCTGCTCCCAGACCAACTGCATGTCAGAGATATTTTCagaaagACGGACCTAACACCCACTGTGCACCTGGTGTGTGCAGTCAGAACTCAGCCCAGAGGTCCACTAGGAGCAAGACCAAAGGTCAGAGAGCCAGAACCACAACCGTCTGCCATGCCAACCAGACAGAACCCAGAGGGTGCCACCCCAGCCCCATCTGTGCCCACTGAACCAGAGCTGAGACAACGCAGGTACACTTCCACCTCTCCCGCCCCACCCGCATGGCCTGGCACTACAACGCCAGGGGCAGCAGAGATAACCAACCCAACCTTCCCCACCTACTCCCTCTACAGCCCTCAACAGCTGCTCTGGCTGCAGCACATGTATGCTCGCCAATATTACATGCAGTACCATGCAGCCTATGCAGCAGCAGCTTCTGCCCCCTTTGCCCCAGCCACAGGCCCATCCCTGCCTGCTGCTCCCCACCAAGCCGCTGTCCCAGCACCCCTGCCCAATCAGGCCCCCATTGACAACctgccagccaatcagaatgcgcAGGACGGCGCCTTTATCAACCCGGGAGCAGCCAATCAGAACCTGCGGATGAATGCCCAAGGCGGGCCTGtgatggaggatgaggaggaaatGGATCGTGATTGGCTGGACTGGGTGTACACAGCTGCCCGCCTGGGAGTGTTTCTCAGTATTGTCTACTTCTACTCCAGCCTGAGCCGCTTCGCCCTTGTCATGAGCAGCCTGCTCCTTATGTACCTgcacACAGCAGGCTGGTTCCCCTTCAGACAAAGGCCCCTGGTCAGAGGTCCAAACAACCAGGTCCCTGAGGTCATCCAGAACCAGGACAGGAACCCAGTGCCACCGGTGGAGGTCCCTGCAGGAGAAGAGGGGGCCGAGGCGGAGGTTGGACCTGATGAACCACACCCCCTGACTGCAGTACCTGTGCCTCAACACAGGGTGTCCATCGTTTGGAGTGCCTGGATCTTCTTCAAAGCCTTCTTTGCCTCCCTCATCCCAGAGGCCCCGGGAGTGGCTAACTGAATAATCGACTTTTCCAGCAGGGGGCACACTGGAACTGAAGTTACCCTCAGTATCAGACCTGCCTCTCTGTCACGGGAAGTCCTCTCTCTGGCCTTCTGGATGGATGCCTGGATGGATGCCTGGACATTTTGTGAGAAATCATGAATGATTAAAAGCGtcaatgcatacaaagccctggCTGTAGTCTGTTAAGGGTGTGTGTTTAGGGATATGATGATTCATTCGGCGCTTCCTGCCTTATGATAGTGACCAAAtggttgtatatacagtacagtacatacacctCTCTCTGCCAAATGGTTGTAAATGCTGTAAATGTTTATTGgaacaaaacatttaaatattattGTATTGTCTGTACACAGCACTTTACAAAACTTATCTTATTATTAGGGCTGGGACAATACTAATATCGCAATATTGTTTCCATTGCAAAAATGTAAACACGAAGCAGATCAAACTCTTTGCCCCTTTAAAAACcttctgtatgtaaaatattgtctgCTATatcttggaaaataaatacatgtgatacTGGATGAGTAGTAatgtacactcagtggccagtttattagggaACACCCATCGCCCACCGGGTCTGACCccttttgcctccagaacagcctgaattctcagggtcatggattctacaaggtgtggcGTTCAAACATTACTCAATTGGTATCAATGGACCTGATGTGTGCTAGGGAAACCaatccccacaccattacaccaccgccaccagcctgtaccgttgacacgaGGCAGAATATCAACGTAGTCAGATTCATGTTGCTAAATGCCAGATTTTGACTTTGCCATCAGCATGACTCAACAGGAACCAAGATTTGTCGGACcgggcaatgtttttccactcctcaattgttcaatgttggtgatcgcgtgcccactggagccgcttgttgtttttagctgataggagtggaaacCGGATGGGCTGCAAAatcccatccgtgacaaggaccgagttgtgcgttccgaaaTGCCGTTCTGTACACTACTTGTACTGTGCCATTATTTTCCAGTTTGTGGCCTGCCTcgtagcttgcacgattcttgccattctcctacgacctctcatcaacgagctgttttcgccaACAGACCTGCccctgactggatgttttttttcCCGCACGGTTCTCAGTTAACCGAAGATGACTCCGACGATTATACCATGCTTAAAGTCACTTACGTTACTTGTtatgcccattctaacgttcaatcgaacagtaactgaatgcctcgatgcccgtctgcctgctttataaagcaagccacggccacgtgactcactgtctgtaggagcaaacAATTTGTGAACGggttggtgtacctaataaactggccagtgATTGTATGTTTCCAACATACATGGGGCTGTTTTCCGAAATAGTTAAATccactttgtgttttgtttccttgccacgatactaacgagtatcgcAATACTGGTATTGTGCCGGCCATACTTATTATGCAAACTTGCTTTAATCTGGGTTAAATTATGAGATGCTTATAGTGCTGTATGGTAAAATAGTTTGTATTGCTCTTGCTCAGAGATGGAAGTGCTATACAGGGTTGTGCATGAGTATTGAATGTTTCTCTGGTTGTCTCAGATGTGAAATGGAAGGCAGTGTTAACATAGTGTGGCTTTAATTCATTAGACTGGTTAAAGATCTTCTGAAAGTTGAATTATGTTAAACACGGGAATATGCAGTTGTGTGGGGCTTAGGCCAGACTGTTTTTGCAATTAAAATGGAATCATGCATAGTGACCTCGCTCCCTTGTTACAcaatgagaaaaatatatattgtgaTTCCTTTTGGAATGCCTTTAACTGTACACATACACTAAGTGTAATTCCCCCCCTAGTACGTTCTAGTGTGatttatctttttgttttttattttggtAAAACAGCTTTTTAATGGATGCTACTGTATCAAGAATATTTTGTGGAGACTTGCAATAAATTTACTTATTTAAAAGGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201393 lncRNA downstream 55301 69195541 ~ 69195986 (-) True G177272
TU201365 lncRNA downstream 134124 69116867 ~ 69117163 (-) True G177244
TU201341 lncRNA downstream 137296 69112267 ~ 69113991 (-) True LOC110494649
TU201312 lncRNA downstream 145069 69049020 ~ 69106218 (-) True G177192
TU201274 lncRNA downstream 271830 68978979 ~ 68979457 (-) True G177154
TU201328 lncRNA upstream 44907 69310511 ~ 69311709 (-) True G177207
TU201438 lncRNA upstream 53957 69319561 ~ 69319944 (-) True G177315
TU201445 lncRNA upstream 59946 69325550 ~ 69326260 (-) True G177322
TU201446 lncRNA upstream 60704 69326308 ~ 69326828 (-) True G177323
TU201456 lncRNA upstream 99508 69365112 ~ 69365852 (-) True G177333
XM_021570075.2 mRNA downstream 1005 69235656 ~ 69250282 (-) True LOC110494745
XM_036954368.1 mRNA downstream 21732 69207423 ~ 69229555 (-) False nlrc5
XM_021570104.2 mRNA upstream 801 69266405 ~ 69274547 (-) True slc12a3
XM_021570137.2 mRNA upstream 11374 69276978 ~ 69308622 (-) False nup93
XM_021570130.2 mRNA upstream 11374 69276978 ~ 69308804 (-) False nup93
XM_021570113.2 mRNA upstream 11374 69276978 ~ 69308904 (-) False nup93
XM_021570122.2 mRNA upstream 11374 69276978 ~ 69308904 (-) True nup93
TU198454 other downstream 2558437 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 2860521 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 2912901 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 2952973 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 3329058 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 325531 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 428005 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 1294918 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1503554 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1639768 70905372 ~ 70906254 (-) True G179215

Expression Profile