RNA id: XM_021570113.2


Basic Information

Item Value
RNA id XM_021570113.2
length 2780
RNA type mRNA
GC content 0.55
exon number 21
gene id nup93
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69276978 ~ 69308904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGGTTGCGAGACTTCTCGATCTACCACCTCCATTACACTCCGGCGCAGCAGGTGGCGGCAGAGAGCTGCCCACAAGTAAAAAGCGCAATGTCGTTTTGGAAAACGAGACATCATCCAATCATCGTAGACCTCAGAAGTGCCGGGGTAAAATTGGTTGCCATGGAAGCGGAGGGCTTTGGAGAACTCCTGCAGCAGGCAGAGCAGCTTGCAGCAGAGACTGAGGCCGTGTCTGAGCTTCCTCATGTTGAGAGGAACCTTCAGGAGATCCAGCAGGCTGGAGAGAGGCTACGCTCCCGCACCTTAACTCGAACATCACAAGACGCTGCTGATGTGAAAGCGTCCATCCTCCTTGGGTCCAGAGGCCTGGACATCTTCCACATCTCCCAGCGTCTGGAGAGCCTGAGTGCTGCCACCACCTTTGAACCTCTAGAGCCAGTGAAGGACACTGACATCCAGGGCTTTCTGAAGAATGAGAGGGACAATGCGCTGCTCTCTGCCATCGAGGAGTCACGTCGCAGGACGTTCCTCTTGGCAGAGGAGTACCACCGCGAGTCCATGCTGGTTCAGTGGGAGCAGGTGAAGCAAAGAGTACTGCACACCCTGTTGGGAGCAGGGGAAGATGCTCTGGACTTCAGCCAAGACATAGAGCCCAGCTTTGTGAGTGACGCAGGAGTTCCTGGACGGAGTGCTCTTGACAGCGTGGAGGTGGCCTATGGACGACAGATCTATGTTTTTAATGAGAAGATAGTGAATGGACATGTCCAGCCCAACCTGGGAGACCTCTGTGCCTCAGTGGCAGACAGCCTGGATGACAAGAATGTGTCGGACATGTGGTTAATGGTGAAGCAGATGACAGACGTGCTGCTGGTCCCAGCCAAAGACACACTGAAGAGCCGCACGGCCTTGGACATGCAGATGGCTTTCGTCACGCAGGCCCTGCAGTTCCTGCAGAACAGCTATAAGAACTACACCATGGTGACGGTGTTTGGGAACCTGCACCAGGCCCAGCTAGGAGGAGTCCCTGGCACCTATCAGCTGGTTCGCAGCTTCCTCAACATCAAACTGCCAGGGCCTCTGCCAGGCATGCAGGATGGTGAGGTGGAGGGTCACCCAGTCTGGGCTCTGATCTACTACTGCCTGCGCTGTGGGGACCTGGGGGCTGCCATGCAGGTGGTGAACCGGGCTCAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAGTACATGAACAGCCCTGACAGACGCCTGGCCCCCGCCACAGAGAACAAGCTGCGTCTCCACTACCGCAGAGTGCTGAGGAACTGTGCTGACCCCTACAAGAGGGCCGTCTACTGCCTCATCGGGAAGTGTGACATCGCAGACAACCATGGAGAGGTGGCCGACAAGACCGAGGACTACCTGTGGCTTAAGCTCAACCAGGTGTGCTTCGATGACGACGGCAGCAGTGCTCCTCAGGATAGACTGACATTGGCCCAGCTACAGAAACAGCTTCTAGAGGACTACGGAGAGTCCCACTTCTCGGCCAGCCAACAGCCGTTCCTGTACTTCCAGGTGCTGTTCCTCACGGCCCAGTTTGAGGCTGCTGTGGCCTTCCTGTTCCGGGTGGAGCGTCTACGCAGTCATGCAGTTCACGTGGCTCTGGTTCTCTACGAGCTACGGCTGCTGCTCAAGTCATCAGGGCAGAGCGCACAACTGTTGAGTCAGGAAGCTGGGGACCCCCCTATGGTGCGTCGGCTCAACTTCATCCGGCTCCTCATGCTCTACACGCGCAAGTTTGAGTCCACAGACCCCCGGGAGGCTCTACAGTACTTCTACTTCCTACGGAATGAAAAAAACAACCAAGGAGAGAACATGTTCATGTGCTGTGTTAGCGAGCTGGTGATTGAGAGTCGAGAGTTTGACATGCTTCTAGGAAGACTGGAAAAAGATGGCAGCAGAAAGCCTGGAGTGATTGATAAATTTGCCGGAGACACTCGAGCCATTATCACAAAAGTGGCGCTGGAGGCTGAGAACAAGGGCCTGTTTGAGGAAGCAGTAAGACTGTATGAGCTGGCCAAGAATCCAGACAAGGTCTTAGAGCTGATGAACAGGCTGCTGAGTCCTGTTATCGCCCAAGTCAGCGCTGCCCAGTCCAACAAGGAGAGACTGAAGAACACTGCTGTTGCCATCGCTGAGCGGTACCGGACCCAGGGTGTTGCTGGAGAGAAGTCTGCAGACAGCACCTTCTACCTGCTGCTGGACCTCATGACCTTCTTTGATGAGTACCATGCTGGAAACATAGACCGGGCCTACGATgtGATGGAGAGACTGAAGCTGGTCCCTCTGAGTCAAGACAGTGTGGAGGAAAGGGTTGCTGCATTTCGCAATTTCAGTGATGagGTCAGGCATAATCTGTCGGAGGTACTCCTGGCCACCATGAATATCCTGTTCACGCAGTGCAAGCGGCTGAAGGGGGCCGCAGCAGGAACCCCTGGTCGACCACAGAGGTCCATGGAGGACAGAGACTCGCAGCTGCGCAGCCAAGCCCGTGCACTGATCACGTTTGCTGGGATTATCCCGTACCGCATGGCAGGCGACACCAATGCCCGGCTGGTGCAGATGGAGGTCCTGATGAACTGACCCCAGAATACCTTCAAGCCCCAGCCATACCCACCCTTTTCATCAACTGTCAGATTTTGTTTTTCTTCGTCCCCATTTTATGTTTCTTTGTCCTTATTTGTTGCTCCATATTAGTATTTTTTTCAAAAATTCAATAAAATGTCAGTTAAATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201393 lncRNA downstream 80992 69195541 ~ 69195986 (-) True G177272
TU201365 lncRNA downstream 159815 69116867 ~ 69117163 (-) True G177244
TU201341 lncRNA downstream 162987 69112267 ~ 69113991 (-) True LOC110494649
TU201312 lncRNA downstream 170760 69049020 ~ 69106218 (-) True G177192
TU201274 lncRNA downstream 297521 68978979 ~ 68979457 (-) True G177154
TU201328 lncRNA upstream 1607 69310511 ~ 69311709 (-) True G177207
TU201438 lncRNA upstream 10657 69319561 ~ 69319944 (-) True G177315
TU201445 lncRNA upstream 16646 69325550 ~ 69326260 (-) True G177322
TU201446 lncRNA upstream 17404 69326308 ~ 69326828 (-) True G177323
TU201456 lncRNA upstream 56208 69365112 ~ 69365852 (-) True G177333
XM_021570104.2 mRNA downstream 2431 69266405 ~ 69274547 (-) True slc12a3
XM_021570093.2 mRNA downstream 11373 69251287 ~ 69265605 (-) True herpud1
XM_021570086.2 mRNA downstream 11374 69251287 ~ 69265604 (-) False herpud1
XM_021570075.2 mRNA downstream 26696 69235656 ~ 69250282 (-) True LOC110494745
XR_005037675.1 mRNA downstream 47423 69208643 ~ 69229555 (-) True nlrc5
XM_021570168.2 mRNA upstream 22119 69331023 ~ 69342065 (-) False LOC110494832
XM_036954461.1 mRNA upstream 22119 69331023 ~ 69342065 (-) False LOC110494832
XM_036954464.1 mRNA upstream 22119 69331023 ~ 69342066 (-) True LOC110494832
XM_021570198.2 mRNA upstream 44758 69353662 ~ 69389692 (-) False LOC110494854
XM_021570186.2 mRNA upstream 44758 69353662 ~ 69389693 (-) False LOC110494854
TU198454 other downstream 2584128 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 2886212 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 2938592 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 2978664 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 3354749 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 282231 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 384705 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 1251618 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1460254 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1596468 70905372 ~ 70906254 (-) True G179215

Expression Profile