RNA id: XM_021570198.2


Basic Information

Item Value
RNA id XM_021570198.2
length 1416
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110494854
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69353662 ~ 69389693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTACAGTCATAAATCGGACTCCGAGGAGCCAGGAAGTATGCAGCGCGACAGATAAAGTCGAGAGAGCGGGCGTTTGTTGTCAGTGGACGGGGATCACACGCTTCAGGGTGAGAGGGAATTATAGCCGAGTGCGAAATTGAGCCTAATCCATTGCAGTGGCAGAGACTGACCACTCAGTAGTTTAGATTTGAAAGCGGGGAGAGATCACGACCCTGCTTACAATTAGGTAAATATTACGTTAGCACATTGCTACAAAACAAGACGGAAGAGAATAGAAGCGGGATTGCTGTTATTTCACGGCAAAGGTTTGTCTTGCTCACAAAACAATTAGAATCAAGGAACATTTCTCAGCAAAGCTTCAAGATGCCTCGGGTGGTCCCGGATCAAAGGAGCAAGTTTGAAAACGAAGAATTCTTCAGAAAACTCAGTCGGGAGTGCGAGATCAAATACACAGGTTTCCGAGACAGACCGCACGAGGAGAGGCAAGCCAGGTTTCAGAACGCTTCTAGAGACGGTCGCTCAGAAATAGCTTTTGTGGCGACGGGCACCAACCTCTCGCTGCAGTTCTTCCCAGCCAACTTGCACGGGGAGCAGAGGCAGACACCCACACGAGATTATGTGGACTTTGACCGGGAGACGGGAAAGGTGTACCTGAAGGCCCCTATGATCCTGAATGGAGTGTGTGTGACCTGGAAGGGCTGCATAGACCTGCAGCGCTTGGATGGGATGGGCTGTCTGGAGTTCGATGAGGAGAGAGCACAGCATGAGGATGCCCTGGCGCTAGCATCCTTTGAGGAGTCGCGTAGGAGGACCCGGGACTTTGAGGACAGAGACCGCTCGCACCGAGAGGACCTGGAGgACCCTGTGGCATCAAAAATCTGGGACTGATGGCATTCAAGGACCAGGCCCAGGCGACAGCAGGACCTCAGCCCTGGCACCGACATGGGCAACAACGCTGATGATCACAAGATGCGCTAGAGGCCAGAGAGACGCAGGGGAGTGGGGTCAGGGTGACCTGTCCATCGTACTAGGCCAGTCTCACACCCTGTCACCAAGCTGTTAACTGGAGAGACCAAAGTCCACATTGCTAGGGATttgggggtgggtgggggtggggcCCTTTTTAATTTTAAGAAGGGACTGGGTGAGGTGGGTGTCCATTTTTAAGTGTGGTGTAAGAGGATCGACCCAAACCTCCTTGTCTTCGGGGGGGGGTTTGCACTATCTGATACATTCAGTTTAGTACCCACATTGCCTTCTGTATGCATGGAGCACCTGCCTACCTATGTTTTCTTTTGTCCCTCTATGCAAGCTATTTCGGCAGCACTTTCTTTTACAATGCTTTATAAATAGGAAATTACTGGGTGATTAAATGGAACACATTTGTTATTAAATAATTACATATTCTTCCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201446 lncRNA downstream 26834 69326308 ~ 69326828 (-) True G177323
TU201445 lncRNA downstream 27402 69325550 ~ 69326260 (-) True G177322
TU201438 lncRNA downstream 33718 69319561 ~ 69319944 (-) True G177315
TU201328 lncRNA downstream 41953 69310511 ~ 69311709 (-) True G177207
TU201393 lncRNA downstream 157676 69195541 ~ 69195986 (-) True G177272
TU201477 lncRNA upstream 50155 69439847 ~ 69458295 (-) True G177353
TU201564 lncRNA upstream 152683 69542375 ~ 69542883 (-) True G177428
TU201625 lncRNA upstream 200975 69590667 ~ 69591051 (-) True G177486
TU202014 lncRNA upstream 240161 69629853 ~ 69638176 (-) True G177834
TU202016 lncRNA upstream 241242 69630934 ~ 69638886 (-) False G177835
XM_036954464.1 mRNA downstream 11596 69331023 ~ 69342066 (-) True LOC110494832
XM_021570168.2 mRNA downstream 11597 69331023 ~ 69342065 (-) False LOC110494832
XM_036954461.1 mRNA downstream 11597 69331023 ~ 69342065 (-) False LOC110494832
XM_021570113.2 mRNA downstream 44758 69276978 ~ 69308904 (-) False nup93
XM_021570122.2 mRNA downstream 44758 69276978 ~ 69308904 (-) True nup93
XM_036954480.1 mRNA upstream 22077 69411769 ~ 69549679 (-) False gnao1a
XM_036954495.1 mRNA upstream 22676 69412368 ~ 69549683 (-) False gnao1a
XM_036954484.1 mRNA upstream 26380 69416072 ~ 69549683 (-) True gnao1a
XM_021566685.2 mRNA upstream 188477 69578169 ~ 69584885 (-) False LOC110492400
XM_021566688.2 mRNA upstream 188477 69578169 ~ 69584892 (-) False LOC110492400
TU198454 other downstream 2660812 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 2962896 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3015276 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 3055348 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 3431433 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 201443 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 303917 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 1170830 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1379466 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1515680 70905372 ~ 70906254 (-) True G179215

Expression Profile