RNA id: XM_036954480.1


Basic Information

Item Value
RNA id XM_036954480.1
length 2314
RNA type mRNA
GC content 0.46
exon number 8
gene id gnao1a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69411769 ~ 69549683 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCAGGACCGTGGCTCGAGCATGTCTCCTGCGCTGATTGGTCCTGACGTCAGCAAGATTGTCTGAGTGCGGAGCCAAGCGCGCTCCCCTCTACATTGAGCAAGCTAAACGATGCGAGCGCTCGCATCCGTCGCCGCCGCCCAGTAGAGTTTCCCAGCCCGCGGACCAAGCACAACAACACCGAAAGAAATAGACCGTGTGAGGGCAATATACGAAGACCAGTGCTTTTTTCAAACAAGTGTCAAACGTTATCGTTTGggatttttttaaatgctttaaCTAGTCGCCgacagagcgcgagagagtgGAACGAGAGCGAGTCAGCCAGCCTAGAGAGGGATAAGGAAGAAAGAGGGAAAGTAATTGCTGGTATATTTTGGTCCTCGCCAACCGTTACTTTGGATATCAAGAAGATCAGAGGTTGTGTAGTCATGGGATGTACACTGAGCGCCGAGGAGAGAGCGGCTTTGGACAGGAGCAAGGCTATCGAGAAAAACCTAAAAGAAGATGGAGTCACTGCCGCGAAAGACGTAAAACTACTCCTGCTTGGGGCTGGGGAGTCAGGAAAAAGTACCATCGTGAAACAGATGAAGATTATCCACGAGGATGGCTTCTCTGGAGATGATGTGAAGCAGTACAAGCCTGTGGTCTACAGCAACACAATCCAGTCTCTGGCTGCCATCGTCCGTGCCATGGACACCCTTGGCCTGGAGTACGGAGACAAGGAGAGAAAAgcTGATGCTAAGATGGTGTGTGACGTGGTGAGTCGTATGGAGGACACTGAGCCCTACTCTCCTGAGCTCCTGGGGGCTATGATCCGCCTGTGGTCTGACTCCGGCATCCAGGAGTGCTTCAGCCGCGCCCGAGAATACCAGCTCAATGACTCTGCCCAATACTACCTAGACAGTTTAGACCGGATCGGTGCACCTGACTACCAGCCCACAGAGCAGGACATCCTCAGAACCCGAGTCAAGACCACTGGCATTGTAGAAACTCACTTCGTCTTCAAGAACCTGCACTTCAGGCTGTTTGATGTGGGAGGTCAGAGGTCGGAGAGGAAGAAATGGATACACTGCTTTGAGGACGTGACAGCCATTATCTTCTGTGTGGCACTGAGTGGGTACGACCAGGTGCTGCATGAAGACGAAACCACGAATCGCATGCACGAGTCTCTTATGCTGTTCGATTCCATCTGTAACAACAAATTCTTCATTGACACTTCCATCATTCTCTTCCTCAACAAGAAAGATCTGTTTGCCGAAAAGATCAAGAAATCTGCCTTGAGTATCTGTTTCCCTGAGTATACCGGTTCTAACACCTATGACGATGCAGCTGCCTACATCCAAGCACAATTTGAGAGCAAGAACCGCTCGCCTAATAAGGAGATCTACTGTCACCTGACGTGTGCCACGGATACAGGGAACATCCAGGTGGTGTTTGACGCTGTTACTGACATCATCATCGCCAACAACCTGCGAGGGTGTGGTTTGTACTAAGCCCTGATCCTCTCACCTCTGGAAATTATTCTAATTGAAAATGCAACTTGGTAAATAATGAAATTTTAAAAATAGGCATACGTATATctaaatgtatatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctagaattgtagaataatattgaagacatcgaactatgaaataacacacatggaatcatgtagaaaccaaaaaagtgttaaacaaatcgaaatagattttagattattcaaagtagccaccctttgccttgatgacagctttgcacactcttggccttctctcaactagtacaaaaaaagaaaaacccttgaatgagtaggtgtgtccaaacgtttgactggtactgtgtataatGGGGCCATACTTGCAAACATTAGAAACAgtttgcctttaaactgtttctCTGTCTCAAAATGTGCATCAGCCAATTAATATCGTTGATTAGTATCATTGTCCCATCAAATAGCCTGGCACATTTTAGCCCTATCCTAACCTCACCAGCTGTCGGGGATTATTCTGTATAACAAACTCCACAAAGACTTTTTATCCACCACGGCATTTCTTGAAATAGGTTAACCCTGGCCACCAGAGGGATATTTTAAACCTATTTGGTATGGTATGTTAGGCCTATGTACAACACTAATTCATCATGAAGTTGtttattttttcacattttatttcaccttcatttaaccaggtaggccagtgacaagttctcatttacaactgcgacctggccaaaatgaagcaaagcagtgcgacaaaaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201456 lncRNA downstream 45917 69365112 ~ 69365852 (-) True G177333
TU201446 lncRNA downstream 84941 69326308 ~ 69326828 (-) True G177323
TU201445 lncRNA downstream 85509 69325550 ~ 69326260 (-) True G177322
TU201438 lncRNA downstream 91825 69319561 ~ 69319944 (-) True G177315
TU201328 lncRNA downstream 100060 69310511 ~ 69311709 (-) True G177207
TU201625 lncRNA upstream 40988 69590667 ~ 69591051 (-) True G177486
TU202014 lncRNA upstream 80174 69629853 ~ 69638176 (-) True G177834
TU202016 lncRNA upstream 81255 69630934 ~ 69638886 (-) False G177835
TU202017 lncRNA upstream 81255 69630934 ~ 69638886 (-) False G177835
TU202018 lncRNA upstream 81255 69630934 ~ 69638886 (-) False G177835
XM_021570186.2 mRNA downstream 22076 69353662 ~ 69389693 (-) False LOC110494854
XM_021570205.2 mRNA downstream 22076 69356478 ~ 69389693 (-) True LOC110494854
XM_021570198.2 mRNA downstream 22077 69353662 ~ 69389692 (-) False LOC110494854
XM_036954464.1 mRNA downstream 69703 69331023 ~ 69342066 (-) True LOC110494832
XM_021570168.2 mRNA downstream 69704 69331023 ~ 69342065 (-) False LOC110494832
XM_021566685.2 mRNA upstream 28490 69578169 ~ 69584885 (-) False LOC110492400
XM_021566688.2 mRNA upstream 28490 69578169 ~ 69584892 (-) False LOC110492400
XM_036954507.1 mRNA upstream 28490 69578169 ~ 69584892 (-) True LOC110492400
XM_036954533.1 mRNA upstream 99154 69648833 ~ 69704421 (-) False LOC110494902
XM_036954525.1 mRNA upstream 99154 69648833 ~ 69767366 (-) False LOC110494902
TU198454 other downstream 2718919 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3021003 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3073383 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 3113455 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 3489540 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 41456 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 143930 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 1010843 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1219479 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1355693 70905372 ~ 70906254 (-) True G179215

Expression Profile