RNA id: XM_036954507.1


Basic Information

Item Value
RNA id XM_036954507.1
length 4586
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110492400
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69578169 ~ 69584892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTGACTCTCAGAGGTggtgaattccaattattttaaatgtgctagccaggtatgcCCTGGGTTACTCTGTGTGAGTATTGTGTAGGAGCGTTCTGTGTGGGCGCGGTAGGTAGATTCTGTGTGGGTTACCTTtttatgttctgatgttctgtgtggacatctgaccagttctgtgtgagcatctgaccaatcctgtgtggGTGATCAGTAAAATTCTGTGTGAAGTACTTAAGGAATTCCTGTTgtaatttttttttctctccctgtgtgtgtgagagagaggaggagtgagattgtgtgtgtgtgagactaagGAGCCATGGGCGCGCGCGAGTGCAAAGAACCAGGCATTCCGGACCCTCCTACTGGAGCCTTGAAGGTTATGGTAGATAAATGGGGTAGGGATATTCTGGAACAGGTACTTCTATGGCATAGAGAGGGTGGTTTTCCTTTGACAGGGACACTAAGTGTGACGCTGTTAGATGAGGTAAGACAGAGATTGGTAGAGAAGGAAGGTAAACTAGGAAAAAAGGATCAAATTGACTGGGTGAAATTCAGGAAATGGGAAAGGGAAGCTGACAAACGGAAGAAAAGACAGGACACATTTCGGGGAAAACCCTGTCAGAATATGATAGTTCAGACTGAGGAAGGAGAAAAGAAGGGGAAAGATGAAACAGTGAGAAGGAATAGGAAGGATGATGATGACAGAGACTGTCcccctccatactgtactcctcaaaCTCTCTACCCAGTGTTGCCGGACCTCCCTCCTCCTCGGGCGCCTCCTGCTGATCCGCTGGATGCAAGACCACTACAACCTGCAGCCTCACCCCCTGTCTCTCCCAACACCACGGTGATTGATCGTCTGGCACGGAGCCTGGCTGAAGTCCTGACAGGGTCTGGAGTGACTCCGGCCAGTCTCACTGGAGGCGCAGTGGGGGGAGCACGCCagaaggggaaaaaaatcaaCAACCCTTTTCTCAAGGCTCCTCCACTCAGCTCCAGTGAGGAAAGTGAGGACGGAGGGGCACCCCAGCTGACTCCCCCGTTGAAGGACCGTCTACGGACTAGGACGGAGAGGCGGGTCTCTACCCCCTTCCAATACGACCCAGCATCAGACATGTATCATCAATACCCTCTGATGGCCTGTCCTAACCCTCAGCCTCGACCTGATGATGCTAATGCTGCTGCCGCCGCAGCATGGAACCCCATTGTGTATGTCCAGAGGACGTggagacatgatgaaatcaaagACATTGTAGAGGACCTACCAGACCCAAGTAAGGACGCTGTGAAATATTCAGCAGAGATGAGGGTATTAGTGGGTCAGTACAAACCATCTGCTGCTGAGATAGCCCATATCTGTAAAAAGAAACTGGGACTCAGGTGGGCGGATGTACAGGGACAGTTTGATTGCAACTACCTGTGGGCTGAGAATGGCGCATATCAGGACCAGATAACGGCGCTGCTGGCCAGGATTGTGGAGATGTATCCAACTAAGACTGACTGGACTGCTATCAGAGAATGCACTATGAAGAAAGATGAGGGCCTGGAGGCTTTCAGAAAGAGACTTGAGACCTGTTTCAGGCTACACAGCGGTATCAGACCAAACGAACATGCATATGGGGATCTGCTGAAAGACGCCCTAGTGAGGGGTCTGACACCGGGCCTGGAGAAAGCTGTGAGGACTACCTGCATCAGTTGGGAGACTGAGCCATTAGCAACGGTGGTACAGCACTGCAAGCATGCTGAGAGACAACAGAGTACACAGAAGGAAGACAAAATAAACGAAGAAAAAGTAAAGACACAGAAACTACAGGCTGCCCAGATGACGTTTTACAAGGGAGCAGCCCCAGCAGGGACAGGACGAGGGGGTGGAGTGCGCAGGTGCTACAACTGTGGGAAGCCGGGTCATTTTGCTGCTGACTGCTCTGAGCCAACGAATCCACAGAGGAACAAAGACAGGGGCGGACCGAGAGGAGGGGCCTGAGAGGAGGGggcaagaagaggaggaaaaggagcACATGCATGGACAGCCCCATTCCAACAACAGCCGTGGCAGCCACCTCCCAAGCAATGGCAGGTCGGGCCACCTCACGGGGTCCAGCAACAGCAACAGTGGGGACCACAAGGAGTCCCTCCAGGCAGAGGACAAACTGGAGCCTGGCAGACGGGGCCGCCGGCACAGACGACCCTGTACAATCCAggacagggacaggaggaggagtaTTGACATGATGAGAAGACAGGGACAGTTGTGCTAAAATCCTCAGAGCAACAAGAGCATTTGTTTTTAAAGTGTCACACCCTTCTGAGAGTAGAGCCAACAGTGGAGGCTTGCGTCAATGGCAAAGACGGCCCATCTAACACCAGCTCGACTGCTCCATTATCAGAATGTTCTTCTGACAATGTGTCATGTGACCCTGAAGAGGTGCACTGTGTTAAATCCTGCTACTTTGTTGCCCACCGAGGATGATGGAGAGCCGCACGACTGTGCTGAACTGTTGGAGCTTGTCTCTAAACCAAGGTTGGATTTAACTGATGTCCCTTTGCAAAATGCACATTTGGAACTGTTTGTAGATGGCTCTGCTCAGCGTTCTGAGAAAGGAGAACCATTGGTTGCGTATGCGGTTACTACTGCCTCAACCACACTGGAAAGTGCTAAATTACCCTCCCATCTTTCTGCTCAAGCAGCAGAACTCTTTGCACTCACTAGAGCTTGCATATTAGCTAAAGGCCAGTCTGCTACAATCTATACAGATAGCAGATATGCCTTTGGTGTGGTACATGATTTTGGTACTCTGTGGAAACAGCGCGGCTTCCTGACATCCTCTGGTAAGGCGATCTCTCATTCAAAACTTGTTGATAACTTGCTAAAAGCTATTTTGCTCCCTTCTGAAATTGCTGTTtgtaagtgccttgctcatgcTAACTCTTCCGACCCTGTCTCCAAAGGTAATGCTATGGCTGACTTGGCAGCTAAGGCAGCAGCTGTCTCCTTGGAGGCCCCTGTGTTACATATGGTTTTACTTCCTGATAGTAACCTTTTCTCTCCCACTGATATCTCTGACTTACAATCCTCTGTAGGTCCTGTTGAGTTGAGGAAGTGGAAACGACTATGTACATATGACCAGGTGCAGAAACTCTGGCTGGGCCCAGCTGGGCTACCAGTTTTACCACGTTCATGTTTCCCCTACTTAGCTAAGTTGTCACATGGAAGAGATCATGTGTCAAAGGGGGGAGTTGTTGattttgtaaatacattttgGTTTGCACCTGGGTTTTCTGTGTTTGCTGAACAATTTTGTGCAAAATGTGTGATTTGTATGACTAACAACATGGGAAGAGGTATTCCCATGCCACTGTCGGCTCATCCGACCCCTGAAGGACCATTTGAACACATAATGATGGATTTTATTGAACTCTCTCCTTGTCAAGGTTACAAATATTGTCTGGTGATAGTGGATGCCTTCTCCAAGTGGGTAGAGGCATTCCCATGTCGACATTCCACTGCTATGGCAGTAGCCAAGAATCTCCTTAGGGAGATCATCCCAAGGTGGGGGTTACCATCTAAATTAACCAGCGACAATGGCTCCCACTTTGTAAACCTGGTGATACAGAACTTGTCTGAGAGTCTGCAGATAGACCTCAGGACCCATTGTAGCTATAGGCCCCAATCCGGTGGTTTAATTGAACGCGCTAATCAAACGCTGAAATCTAAGATGGTGAAGCTTATGGCAGAGACGGGGCTTTCTTGGGTCACTGTGATCCCCCTGGCTCTGATGTACATGCGAGGGAGGCCCCACAGAACCACTGGATTGGCTCCTCATGAGGTTCTGACAGGTAGACCAATGAGGATGATTCATTCTCCTTTCCCACAGAACAAGCTGACACTGATGGGCTGCGACGATGACATGGTAAGTTATTGTACTGCTCTAAACAATGTTCTGAAGACTATTTTCCCCAGGGTGAAAGCGGCTCTACCCCAGCCACTGGTGGGGATCCTGCACAAACTGCAACCAGGTGACTGGGTGGTGGTGAAAGACCTGAGACGAAAGCATTGGAACCAGCAGAGGTGGACTGGACCATACCAGGTGATGCTGATTACCCCCACTGCTGTTCGCGTAGCTGAGAGGTCTACTTGGATCCACGCCCATCACTGCAGGAAGGTGCCATACTGCCTACCAGACCCTGAGGATGGAGGACCAGAGACGCCGGAAGTCACCGACTAGATGGGAGGATCAGGCCCAGACTCTACACATAATGTTTCTTGCTCTGGTCTTGAGCATTCTCATTACAGTGGCCATATGGACAGTGACTCAAGGACAACCGGTCCTGGAAAGACAACATGGTACGGACTCGACTGATAACCGTTCAGTCCCACTGCGGGACTTAAATAACAGCCACTCCAGCTCGAGCCAACGGGAGGCTCAGGACAGGAGTCCAGCAAACAATAGCCGCTCCCATACCGAAAGAAGAAGAAGGTCAATGCATCCACTGGATGAGCATCACAGTAGGAATCACGAGGGAAACACTTGGTGGTCACTGCTTAACTATACAGTAAAGACTGAACTGATGTTAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201564 lncRNA downstream 35286 69542375 ~ 69542883 (-) True G177428
TU201477 lncRNA downstream 119874 69439847 ~ 69458295 (-) True G177353
TU201456 lncRNA downstream 212317 69365112 ~ 69365852 (-) True G177333
TU201446 lncRNA downstream 251341 69326308 ~ 69326828 (-) True G177323
TU201445 lncRNA downstream 251909 69325550 ~ 69326260 (-) True G177322
TU201625 lncRNA upstream 5775 69590667 ~ 69591051 (-) True G177486
TU202014 lncRNA upstream 44961 69629853 ~ 69638176 (-) True G177834
TU202016 lncRNA upstream 46042 69630934 ~ 69638886 (-) False G177835
TU202017 lncRNA upstream 46042 69630934 ~ 69638886 (-) False G177835
TU202018 lncRNA upstream 46042 69630934 ~ 69638886 (-) False G177835
XM_036954495.1 mRNA downstream 28486 69412368 ~ 69549683 (-) False gnao1a
XM_036954484.1 mRNA downstream 28486 69416072 ~ 69549683 (-) True gnao1a
XM_036954480.1 mRNA downstream 28490 69411769 ~ 69549679 (-) False gnao1a
XM_021570186.2 mRNA downstream 188476 69353662 ~ 69389693 (-) False LOC110494854
XM_036954533.1 mRNA upstream 63941 69648833 ~ 69704421 (-) False LOC110494902
XM_036954525.1 mRNA upstream 63941 69648833 ~ 69767366 (-) False LOC110494902
XM_036954526.1 mRNA upstream 63941 69648833 ~ 69767366 (-) False LOC110494902
XM_036954536.1 mRNA upstream 63941 69648833 ~ 69767366 (-) False LOC110494902
XM_021570267.2 mRNA upstream 191035 69775927 ~ 69827478 (-) False LOC110494926
TU198454 other downstream 2885319 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3187403 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3239783 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 3279855 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 3655940 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 6243 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 108717 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 975630 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1184266 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1320480 70905372 ~ 70906254 (-) True G179215

Expression Profile