RNA id: XM_036954525.1


Basic Information

Item Value
RNA id XM_036954525.1
length 5050
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110494902
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69648833 ~ 69767366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcagtgatacACGCAGCCGCCCAACCTGGCCGCAGCAAGATTGTTGAGCAACATTTTTCCCCCTTCTGTATGACACTGGTGCGATTTAAAACATTATTATATTTGTTTTATACATTGGATTCTTGGGAGGATAAACGAAACGTGTGACATAGAAGAACAATAGGAGAACGTGTTTACGGTATTGGAGACACGGGTACTCTGGACGTTCATGAGGTGGACTTCGCCGCATTTGGTGGGCTGCTCCTAGCTTGGAAAATCCCACCACATATCCCTGACATTCATTCCAAACTCGACCTGTACGGTGAACTGTCACCGACGTAGATACATTTTAAAGGAAAAGCATGGAATAAAGCCTGACATCGAAGGAGTCCTGAAGAAAAGTCGTTTTTTTTTCTGGTGAAAAGTAGTCCACTGCTTATTTTAAATAACCTATTCATTATTAAGTAGCCTAGGAGAGGCATAGCCTACACTTACAACTCATCACAAGATGTCTGTTCCGgtgttctgtaGAATGTTTGACTGCCTGCAGGGGGCATCATCAGAGAACGTGTTGGCCAAGGCCCTGTACGACAATGTGGCCGAGTCCCCAGACGAGCTGTCCTTCCGGAAGGGTGATATCATGACGGTATTGGAGCGGGACACCCAGGGTCTGGACGGCTGGTGGCTCTGCTCTCTGCATGGACGCCAGGGCATCGTCCCCGGCAACCGACTCAAGATCCTGGTGGGCATGTATGACAAGGCgggccagcagcagcagcctccactcctccaggCCTCCCAGGCTGGCTCTGCCCAGACCCAGAGCCTGAGCCAGCTGGCCTTCACCCCGCAGAGTGCCTACACTaagtcctccccctcctcccagtACACAGCCATGCACCCTGCcttctccaaccctggtcctgtccCCGCCCTACCCGACAGCATCTACATGATGCCCCCCAACCATGGCAAGCCCTCCCCTTCAAGCCTGTACCAGATACCCACGGGCCCCCAAGCCCCACCCAAGGCCCCCATGCTCGCCCAGAAGCAGTACCACGCCCCTGTTCAGGACATCTACCAGGTGCCTCCCTCCATGGGGCCAGCTCCTGTCCAGGACATCTACCAGGTGCCCCCTTCAGCAAGAGGGCCTGTTCCTGGGCAGGATATCTACCAGGTTCCCCCCTCACTGAACCAGACTCAGATCCCCCCCTCCATAGAAAAGAGGAGCTGGGACTCTAAACCTCTAGGAAAGgTGGTGGTGCCGACGCGGGTGGGCCAGGTGTATGTGTATGACACGGGAATGTCGGAGCAGGAGGAGTATGACGTCCCCCCCAGACACATGCCTCCCTCCCAGCAGTCACAGGATATTTATGACGTTCCCCCAACCCGCGCCCAGTACAGCCAACAGGTGTATGACACACCCCCAATGGCGGTGAAAGGCCCCCCCAGTGGTCAAGACATCTATGACACACCCCCCAGTGTGGACAAGAGCCAACTGCTCTCTCAGCAAACGgTGTACGACTTCCCACCCTCCGTCAGCAAGGATGTTACAGACGCTCCTATCAGGGAGGAGACCTACGACGTGCCCCCCCACTTTGCCAAGCTGAAGAGTCTGGAGAGCCAGAACCAGGGCTATCTTATCCCCGGGGGGCCTGAGTCCCCCATCCCTGAAGATGTGTACGatatccctccccctcccctcaccgGAAAGCACCACCCAGACGCCCACCTGGGTCAGGAGATCTACGACATCCCCGCCAGTCTGAGGAAGGGTGGACTCCATGACCCCCAGGATGTGTACGATTTCCCCCGCGAGCGGCCTGCAGGCGAAGACTCCATCTATGACATCCCCCCTCAGGTGGTGCGAGATGCGGGCGCCACAGAGGAGCTGACGGTCAGCTTCAAACGCCTGTCTGCCTCCAGCACGGGCAGCACCCGCAGCAACCTGTCCACCTCCTCTCTGGACATGGTGCCAGTCAGGGAGTCGGCGGTGCCCAGCCAGGCCGGCCCAGGGAAACTGTTGATCCTGGATCTAGATCAGGCCATGGAGCGCCTCTCCCGTCTGCAGCAGGGGGTGGAgggctctgtctccctcctcatgTCCTTCATCAGTGGGAACTGGCGCAGCCCCACCCAGATGGAGGCCAACCTGCCAGCCATCAGGCAGGCGGTGGACAGGATGAGGGTAGCTGTCAGGGACCTGCTGGAGTTTGCCAGGGGGGCTGTGGCCAACTCTGCCCAGGCCACTGACCGCACGTTACAGGCCAAGCTGGGCAAGCAGGTGCAGAAGATGGAGGAGGCCTTCCAGGGCCTTGTCAAGTACAGCCAGGCTCTGGATGCTGTGGCCTGGGCCCCTTCTGCCCTGATGACGCCCTCAGCAGGCAGCAGTGGGGATGACCTGGACCGGCTGGTCATGTGTGCCCGGGGTGTGCCTGATGACACCAAACAGCTGGCCTCCTTTCTCCATGGCAACGCCTCGCTGCTCTTCAAAAGGACAAACAAGCAGCAGCAGCTTCCTCTGCCCCCCGTCCCCCATGCCGCTGACCTCATGGGTCAGATGACCAACAACAACATCTCAGCCTATCAGATGGGAGACGGGAGAGCCAACATTCAGTCCCGCCCCCTGCCGTCCCCGCCCAAGCTCACAGCCGAGGAGGAGACCCGTGACCGGCCATACGAGACCACAGAGGAGGGCTGGATGGAGGACTATGACTATGTGCATTTACAGGGTAAGGAGGAGTTTGAGAAGAATCAGAGGCAATTATTAGAGAAAGGGACCAGACACAACAAAACCACACTGGAACAGCAGCAGCAGCTGAAACAGTTTGAGCGACTGGAGCAGGAAGTCAGCCGGCCAATCAACAACGATATCTCAGGCTGGACTCCGCCTCCCCACTACCCAACGGCCCAGCGGAGCAAGCTGAGCATGGGTGACCGGCAGCTGCTGCTCTTCTACTCGGAGCAGTGTGAGGCCAACATCACCACCCTCACCAACGCCATCGACGCCTTCTACTCCtccatcaacaacaaccagccgCCCAAGATCTTTGTGGCTCACAGCAAGTTTGTCATCCTCAGCGCACACAAGCTGGTGTTCATCGGGGACACGCTCTCGCGACAGGCCAAATCCTCAGAGGTGCGGGCGCATGTGGCCCAGCACAGTAACACGCTGTGTGACAAACTCAAGGACATCGTAGTGAGCACCAAGACTGCAGCGCTGCAGTACCCGTCCCCCGGTGCGGCGCGAGACATGACGGAGAGGGTGAGGGAGCTGGCCGGCTGCACACAGCAGTTCCGCATGGCTCTGGGTCAGCTGGTGGCCATGTGAACCTCCGGTCCTGAGACACTGACATGGGGAGTCCACACTGGGACACACAGCACCCACACACCCAGTGGGTCACTGTCACAGACACATGGACCCTTCAACCTCCTCTTGTGCTTTTTATTTCAAAAAAGGACAACTATCTGACTGGGCTGGGCCATTGGTTGTAAATGAATCATTGTAAATATTTTAAGTTACTATTAGCCAGAAAAAAAAGTCAAAGAAAATGAACttccactatatatatatatatatatgtttttgagACCTGGAAAACATGATGTAGTTTTTAGACAATgtccattattattattgttgctatACTGTAATTATTGCTCTGCTTATTATAATTGTTATCATTATTGTTATAATGCGTTGATTAAGGATGTTTACATTTCAAACACATTGTATGTATTACGTAATGCTGTTTTTCATCCCAGATGATCAAATATGGTGGATTTTGTTAAAGTAATGTACTTGTCAGGTGAGCTGTAGGATATGTTGACAGAAAATGAATAGCTTTCCTTGGAGCTGTCAAAGGAGGCTGGGGATCATGTTGTGAGTGTAAGGCATTCTGGGTAGGGGCTGGGAGGGAGAGGTTTCCCTGACAGTTAATAACATTCTCAGATATACTGCTCTCATGGGACAGGATTAATTTTAGTAGTTCTACATGCTAATTAAAATGCCCCAATTAGAAGACTGTCTTATAATACCTTTGAGATAGAAGTCAGAATGAAAAGAACAAACCTGATTTGGAGGTAAAAAATCGGAGGTTAAAGGAAATATGAATTTACGTATTTTTTTCTGCATTACAACTTCCCTTGTTTTTCAAAAGCACAAAGCTTTATCCGTCTGTCTGCTGCTCCTAGAGTGCTTGTTGTAATCACCCACACTCTCCCAGACTCTCATAGTCCTGCATGCTCTCTGTGATCTAAAAAGGGTTGGTTTGGACTCCTCTGTGGCTCCACTGTTCTAGAAGTCGCCTGTGTTCCAGACCAGGCTCTCTGCTCACCTCATACAGGAATAACTCTGCTTTCCCTCCCCCTAGCACTTCCTGGACAGCACCACTGCACCCTGCAGGCCAGGGAAACCCGCTATGGGGGTAAAGGTGTGAGAAGTGCATTTGAATCATTAGCATACACTCAACACCCTTGTAAATTGATGAGCAAATTAGGGAGTGGTTGTTTGTGAGCCACATCTCTGCATTTTACCAAAtgtatgtgtacacacacacacacacacacacacacacacacacacacacataatattgAAGGTAATGTCTGTTTGCATAACAGTAACCATTCTTGACACTTCAAATGACTTTGCAGCAACTGTATCATATCCCCACTTCCAATAGCTGTACCAGAGGTATGTGAGTTAGCTTGGCCAGTGGGTGTGTTTTACTAGTTCTTGAGTCCTGGCGACATCTCCACATGAAGCAGAGGAATCTGGTGCCGCTCCAGTTTCCATTGTCCAGTTTTCTAAAACCTGATTGGCTGTATTCCAAGTATCAGATTACATATTGTACTATAAAGCGCTGCAACATGTTGTTGTGGATATAGTTGAAACCCCTATCAAGTAAAAATAATACCTTGAAAACAAAGCAGACTGGTATTTGTGGTGATGTTATTATGGTCTCAAATCTGTGTTTTAAGATTTGAAATATATATGTTAAGGACATTGCATAACTGGAAAATATATGCTTaatatattttcattaaaaaataaACTTCAAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202025 lncRNA downstream 5514 69635556 ~ 69643319 (-) True G177838
TU202024 lncRNA downstream 5968 69634825 ~ 69642865 (-) True G177837
TU202017 lncRNA downstream 9947 69630934 ~ 69638886 (-) False G177835
TU202121 lncRNA upstream 64460 69831826 ~ 69863384 (-) True G177925
TU202166 lncRNA upstream 100215 69867581 ~ 69868797 (-) True G177969
TU202220 lncRNA upstream 160618 69927984 ~ 69945427 (-) True G178005
TU202274 lncRNA upstream 309811 70077177 ~ 70077507 (-) True G178056
TU202292 lncRNA upstream 335776 70103142 ~ 70103632 (-) True G178074
XM_021566688.2 mRNA downstream 63941 69578169 ~ 69584892 (-) False LOC110492400
XM_036954507.1 mRNA downstream 63941 69578169 ~ 69584892 (-) True LOC110492400
XM_021566685.2 mRNA downstream 63948 69578169 ~ 69584885 (-) False LOC110492400
XM_036954495.1 mRNA downstream 99150 69412368 ~ 69549683 (-) False gnao1a
XM_021570267.2 mRNA upstream 8561 69775927 ~ 69827478 (-) False LOC110494926
XM_036954576.1 mRNA upstream 8561 69775927 ~ 69827479 (-) True LOC110494926
XM_036954544.1 mRNA upstream 67266 69834632 ~ 69870691 (-) False LOC110501833
XM_036954547.1 mRNA upstream 67266 69834632 ~ 69870691 (-) True LOC110501833
XM_021570248.2 mRNA upstream 103435 69870801 ~ 69890649 (-) False LOC110494911
TU201626 other downstream 57111 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 2955983 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3258067 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3310447 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 3350519 66277821 ~ 66298314 (-) False LOC110494122
TU202994 other upstream 793156 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1001792 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1138006 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 1159324 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 1159324 70926690 ~ 70944761 (-) False ttc23