RNA id: TU201996


Basic Information

Item Value
RNA id TU201996
length 652
RNA type TUCP
GC content 0.58
exon number 2
gene id LOC110494902
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69648833 ~ 69767366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtCGGGAGAAGCAGCgaaggacagacacagagagagagagatgtaaatgGGACAGTCTCATTCTTGCACTCTGAGATCACAGTGCCAGAGAATGTGTTAGGATCTTCCCAAGTACTTCTCCCTTGGAAAGAGACAACAGGGAACTTTAACTGGTGGCTAGACAGGGGCTGTTTCCAGGACCAAATCGCTGCCCTGTTACTCCTGTCTGGAGTCTGTCGGACGGACTCACACAAGAGGGCTGAAAATGAACTATCTGAACGTGTTGGCCAAGGCCCTGTACGACAATGTGGCCGAGTCCCCAGACGAGCTGTCCTTCCGGAAGGGTGATATCATGACGGTATTGGAGCGGGACACCCAGGGTCTGGACGGCTGGTGGCTCTGCTCTCTGCATGGACGCCAGGGCATCGTCCCCGGCAACCGACTCAAGATCCTGGTGGGCATGTATGACAAGGCgggccagcagcagcagcctccactcctccaggCCTCCCAGGCTGGCTCTGCCCAGACCCAGAGCCTGAGCCAGCTGGCCTTCACCCCGCAGAGTGCCTACACTaagtcctccccctcctcccagtACACAGCCATGCACCCTGCcttctccaaccctggtcctgtccCCGCCCTACCCGACAGCATCTACATGATGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202048 lncRNA downstream 6582 69686361 ~ 69687027 (-) True G177859
TU202045 lncRNA downstream 11281 69682047 ~ 69682328 (-) True G177857
TU202043 lncRNA downstream 13316 69680004 ~ 69680293 (-) True G177855
TU202041 lncRNA downstream 14678 69678599 ~ 69678931 (-) True G177853
TU202038 lncRNA downstream 17222 69676117 ~ 69676387 (-) True G177851
TU202066 lncRNA upstream 10879 69715278 ~ 69715548 (-) True G177876
TU202071 lncRNA upstream 23244 69727643 ~ 69727860 (-) True G177881
TU202077 lncRNA upstream 28537 69732936 ~ 69733246 (-) True G177887
TU202078 lncRNA upstream 29278 69733677 ~ 69733986 (-) True G177888
TU202080 lncRNA upstream 30041 69734440 ~ 69734650 (-) True G177890
XM_021566688.2 mRNA downstream 108717 69578169 ~ 69584892 (-) False LOC110492400
XM_036954507.1 mRNA downstream 108717 69578169 ~ 69584892 (-) True LOC110492400
XM_021566685.2 mRNA downstream 108724 69578169 ~ 69584885 (-) False LOC110492400
XM_036954495.1 mRNA downstream 143926 69412368 ~ 69549683 (-) False gnao1a
XM_021570267.2 mRNA upstream 71528 69775927 ~ 69827478 (-) False LOC110494926
XM_036954576.1 mRNA upstream 71528 69775927 ~ 69827479 (-) True LOC110494926
XM_036954544.1 mRNA upstream 130233 69834632 ~ 69870691 (-) False LOC110501833
XM_036954547.1 mRNA upstream 130233 69834632 ~ 69870691 (-) True LOC110501833
XM_021570248.2 mRNA upstream 166402 69870801 ~ 69890649 (-) False LOC110494911
TU201626 other downstream 101887 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3000759 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3302843 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3355223 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 3395295 66277821 ~ 66298314 (-) False LOC110494122
TU202994 other upstream 856123 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 1064759 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1200973 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 1222291 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 1222291 70926690 ~ 70944761 (-) False ttc23

Expression Profile