RNA id: XM_036954547.1


Basic Information

Item Value
RNA id XM_036954547.1
length 5236
RNA type mRNA
GC content 0.54
exon number 39
gene id LOC110501833
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69834632 ~ 69870691 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCCTGTCTCAGGGCTCCTAGCTTGCTATGGTTTCACTCTGAGTGTGGTAGACAGcagcaggatgtgtgtgtgtgtacctcccaGACCTGCCTGAGCTgcctctgctgctgctactcccACGCTCTCTCTTACCCCTACTGACAAGAGCTGGGCCCAACATCATGGCTGGCAATACTGACATCTCTTACAGCTTGCAAGAGCACATCACTCAGCTGCTGAAGCCCCAGAAGATTTGTCTCATGCGGCAGGTGCAGCTAAACCAACCCAAGGGGAAGGCTGAGAGCAGGGCTCTGGTGATGACTCTATGGAGAGCTTATGTTGTCCACAGAAAGCAACCTGCTAGgGTGGAAAGCTCCTTCAGCTATTTAGAGATTTATGCCATCAGCATTGAGAGTCTTAATCAGGTGGTGAttgagacggacagacagacctactCTCTCAGTCTGACGTCTGTTGAGGACCTCGAGGCTATGGTCAGTCATGTGACGGCTTCTCTGAAGAAGATCTTCCCTGATTCATCTCCAGGGAAGATCCTGAAGAAGATCCCTCCAGACCTGCAGGAGCGGCTGTGGAACCTGGCAACCCGGGTGGAGGAACACCTGACTGGAACACTGGGACCATGTGGAGGCTTCTCAGAGACGTATGCTGCTCTATGTGACTTCAATGAATTACCTTGCAGAGAGGAGGTCCAATGGGATGTGGACAACATTTACTATGTCCAGAATTGTCGAGAATTCAACCTCCTGGATTTCAGTCATCTGGAAAACAGAGATTTGGCCTTATCAGTGGCCGCACTTTCCTTCAACCAATGGTTCACCAAGATCTCCAGCAAAGACCTCAAACTGAGCTCAGAGGTCCAAGAGCAGGTTCTCTTCATGATCAACAGATCCTCCACcttggaggaggtgtgtctagaGGGATGTGGGCTCAAACTGGATTTTGCAGTGAAGATGGCTTGTGCCCTGCGAGATCACACCTGCTCCGCCATCCACACCATCAACCTGTCAGCCAATCACATAGAGGACAAAGGTGTGATAGCTCTCAGTCAGGAACTGGAGAATCTGCCCAATGGTCTCACTCAGCTGTCCCTCTCCAGGATTAGTGTCTCTCACAAAGGTCTAGGAAATCTGACTCAGGCGTTACGGCAGAACAAGGCCTTCTCCAGCTCTCTGTGTCACCTGGACCTGTCAGGGAATACAGGCATTCTGGCTACAGAGGAAGCTGTGAACCTGTTTAAGTTCCTGTCTGGGACCAATGCTGTATCTTACCTGGACCTGAGTGGCACAGACTGCCCTGTGGACACTCTGTTTGTATCTCTGTCAGCAGGCTGCTGCCCCAACCTGGCCCACCTCAACCTGTCCAGAAACCCCTTCTCCCACAGGAAGGTGAGGGAAGTGACGAGGACTGTAAAGGAATTCTTCAGTAAGTGCAATGAGCTCAGATACGTGGGATTGGCAGGAACCAAACTACCCCCAGAGGCTCTCAGATTGTTGTTGCAGGGTCTTGCCACAAATACTCATCTGTGTGGACTGGAGCTAGACCTGAGTGGCTGTGAgCTGAGGTCTGCTGGGGCCCAGGTGATTCAGGAGCACATCTTTGAAGCCAAGGCCATCAGCAGTCTGGACCTCTCTGACAATGgtttTGAGAGTGACATGGTCACCTTGGTGCTGTCCATCGGTCGTAGTCACTCCATTCGCCATCTGGCTTTGGGACGCAACTTTGCCATGAAGTCCAGAGCTCTAACAGATGTCCTACAGCGTATCGTCCAGCTCATTCAGGAGGAGGAGTGTCCCCTGGAGTCTCTGTCAGTGTGCGACTCCAAGCTGAAGACAGGCACCACCATCCTCATCAACAGCCTGGGTTGCAATGCCAGCCTCACTAAGATAGACATCAGTGGCAACTGCATCGGAGACACTGGAGCCAAGATGCTGGCCAAGGCCTTACTCATCAACACTAAACTCAGGACTCTGGTCTGGGACAGGAACAATGTGACAGCCAGGGGATTTCTGGATGTGGCCAATGCTCTAGAGAGGAACTTCACACTGCAGCACATATCCATCCCCATGAATGATGTCACACACGGGTATCGTAACAGTCCTGAGAAGACAGAGGAGGCTCTGCAGAAGATCCAGTCGTGTCTGATCAGGAACAGCCAGAGAAAGTCTGCAAGCCCAGACCAGATACTAAACCTCCAACAGGGCCTGAAGACCGTACGCTCTGAACAGCTGGTTCAAGGTCTGTGTCAGAGGTTACAGGAGAGTGTCCGACCTTTAGCCCCCTGCAATATACAGGAAGTGCAGTCAGACATATTGGCTGCAGAGGAAGTGCTTCATAATACTAAAACCTCCATTATGCTATTGCCTTCACTTTATGATCTGGTGAAGACACCCTCTAGTGGTGCAATGCTGCAACACATACTGAATGACACGGCCAAAACAGTCACCAACGAAATAACAGAGGAGATTCAGGAGCTGGCTCAGGCCTTGTTGCAGTCAGCCCAGACCCTCTGTCCTAGGGTCACCCACAGGTCAAGTGTCTGTGAGCAGCTGGCTGACTGTGTGGCTAAGAAGtccagacagacagctctgttcATCCAGGACACCTTCATGCAGCACATAGGAGAACTCATCAGTAACAAACTAAGTGAACTCAAACTGTCAGTTAGTGTCTCCTTGGTGGAAAGTATCATTGATGAGGTTCTGCTGGACTTGTCTGTGGCTCAGCAGAAAttgGACCGTCATATGAGGGAGCAGACCACCTCTGGACTCAAAACCAACGTCCCTCATCTACGAGTGGTAGACCATGACTTCCCCATGGATGATtatgTTCCTGTCATTTGGAGGAGCAGCATCCACTCCAAGAGTATCCGTCCAGCACCCTCAGTGAAAAgtCTCCTGGATGTGGACTCGGAGCAGCAGGCAAGAGAGAGCATGCATTATCAGCAGGAAGGAGCATGGGTAGGAGGGAAGGTGCAGGCACTGTCGTCAACGACGACACTGTCAGTCACAGTGGGAGGCCAGCTGAAATCCGAAGGCCCCTCCCACACAGGGAGAGAGGCGGatgctgctcctgctcctgcaGCTGCTGCGGCTCTTAGCAACAGTGAGCCCCGGCGCCCTGAGCCCGCACCTCCTCAGGCCCCTATGGACCTGCCCATCGACTGCCACACACTGAGGCACTACACCCGCTCCAGGCCCAGACCCAACCGCCGGAACAGCAAGCCGCCCAGCAAGACCCAGGAGCAGGCAGCTGAGAGTGAAGAGAATGGAGCCAATGAGACCATTGGCAGGGTGGatgagggagtagaggagttctTCACTAAGAAGATCATCCATGATGACTCTCTAAAAGCGCAGAGGGAGGAGATCCTTGACAAAGCACAACCCACAGAGTCGACTTCCACCACCCCTGCCCCTCCCAGCACGTCTGCCCCGGCCCtgcccccctccaccaccacctcctctagcacctcttcctcctccgcgACTGAAACAACCACCCTTTCCTCCGCCCCCTCCAAAAACATCAAGAAGAAGTTTGGGGACTTCTTCGCCTTCAAGAAAGGCCGTGCCAGCCGGGGGTCGAAGGGCGAGGTTTGCCCAGAGGGCAAGGTCAAAAAGACCTCCATTGCAGATCTAATCAGACCACTCAGGGAGGCaaaagagaaggaaaaagagagggagcgagacaaAAAGGGGAAattggaagaggagaggggtgcTAAGGCCACCAGTGTTAATGATTCTGATGCCACCACAACAGTAAGAGCAGCAGAGGACAACACCATGGCCCCCGCCACTCCCTCTGACGTCGCCACTACCTCCGCCTCCCTGCCCACCAGTGCCTATGCCCAGGAGAAGGGGACCTCCATGTCCCCCAGCGCTCTGACCCCCAGCCCCGTCATCAGCCCTATTGGGGGGTTCttggtggagagggagaagagccGGACTCTGGAGAAGAGCAGGACcccagatggagagaggaggctgaAGGCCACACGGCGCTCCCTCAGGGATGGGAAGTCCCAGTCCCTCATCCTGCTGACAGGCCTGGAGGAAGGCACTGCCACACATGGAAAGAAACACGCATCTGAGAGCACATCCAGCCTTGAGCAGCGTCTCCACGTCATGCTCCACCGCATGGGGGTGACCAAGACACCTCCTGCAGACACAAAGAccagccagAACAAAGAAGAGGAGCTGAGAAAAGCCAACTCAGAGGgTGCAATTCTTGACAAAAAACCTGAACCTCCAACCACGTTGATGAAGCCTCGCACTATGTCCACATCAGCTTCAGACACCAGGTGGCCAATCAGAGCAGGCCTAACTCCTCTGGAGGCTCCCCGAACAGATAAGCCCCTCCTCCCAGGACGACCCATCGGCCCCCTCCCTCCCAAGCCCACAGTGGCAGCCAAAccccctctccctgccccccAGCAGCCCCCTGCTGCAGCTAGGACGTCCCCGGGGTTCCCCCGGCAGCCAAGCAAAGCCACAGGCCCAGAGACCCAGCCAATGGAACCAGAGCCCTCCCAGAGCCAGACCCAGCCCCAGCAGAGGGAGCCCCCCTGCCCCTCCCCCCGCAAGGAGACTCCTCCTGCCCCATCGCCACGCAGGGGACCCTCTGCCCTGGAGAGCAGGGAGCGCTCTGAGAGAGCACAATCAGTTACTGAAGAGAGCCTTCCTAAACCCCGGCCCCGCATGAAGCCCTCTCCCCAGCGGAGAGCTGTGTCTGTCTACGACGACTCTCTCCTCCGAGAACATGCTGCTCTGCTGGACTATGAAGaGCTGAAGGCAACATTGCCACGATTGCAGAGGTCACCAGCCCAGAAACGTGCCAACCCCGGGGAGCTCCCTACCTGTAGTGAGGACCAGCCTGAGGGGAAGGATGTGGAGGAGAGGACTGGCGAGGGGATGGACAGCTGGCCAATAACAGAGGACAAGCCAGGGCCAAGCCCAGTGGGGACCAGTCAGGGAGAGAGCACAgtagagaagaggggagagactgTCTCacagcagcacacagcacaggcagaaacatcagaccaaagaactgaACCCCCCTTACCAGAGACACACATGGATTGACCTGCGCATAGTCTATTTTCTATCATGTCTACCTTTGCCTTGCACGCCAGATTatggaaaaaaaataattataaacaaaatgttttaaaaagagTAAATCCATACATATACTTGTTAATTATTAAAAAGTTGATTTTGAAGTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202101 lncRNA downstream 75647 69758619 ~ 69758985 (-) True G177909
TU202091 lncRNA downstream 86658 69747773 ~ 69747974 (-) True G177901
TU202086 lncRNA downstream 96282 69738105 ~ 69738350 (-) True G177896
TU202085 lncRNA downstream 96621 69737547 ~ 69738011 (-) True G177895
TU202080 lncRNA downstream 99982 69734440 ~ 69734650 (-) True G177890
TU202220 lncRNA upstream 57293 69927984 ~ 69945427 (-) True G178005
TU202274 lncRNA upstream 206486 70077177 ~ 70077507 (-) True G178056
TU202292 lncRNA upstream 232451 70103142 ~ 70103632 (-) True G178074
TU202293 lncRNA upstream 233983 70104674 ~ 70104899 (-) True G178075
TU202294 lncRNA upstream 234663 70105354 ~ 70106158 (-) True G178076
XM_036954576.1 mRNA downstream 7153 69775927 ~ 69827479 (-) True LOC110494926
XM_021570267.2 mRNA downstream 7154 69775927 ~ 69827478 (-) False LOC110494926
XM_036954525.1 mRNA downstream 67266 69648833 ~ 69767366 (-) False LOC110494902
XM_021570248.2 mRNA upstream 110 69870801 ~ 69890649 (-) False LOC110494911
XM_021570256.2 mRNA upstream 110 69870801 ~ 69892079 (-) True LOC110494911
trnav-aac mRNA upstream 60838 69931529 ~ 69931601 (-) True trnav-aac
trnav-aac-2 mRNA upstream 65122 69935813 ~ 69935885 (-) True trnav-aac-2
trnav-aac-3 mRNA upstream 69383 69940074 ~ 69940146 (-) True trnav-aac-3
TU201996 other downstream 130233 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 242910 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3141782 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3443866 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3496246 66335412 ~ 66338386 (-) True G173675
TU202994 other upstream 689831 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 898467 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1034681 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 1055999 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 1055999 70926690 ~ 70944761 (-) False ttc23

Expression Profile