RNA id: XM_021570256.2


Basic Information

Item Value
RNA id XM_021570256.2
length 4175
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110494911
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69870801 ~ 69892079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTCGCCACCGCCCCCCTTCAATGCACAGGCGCACTAACTTTCACAAGGCCGCCATTTTGTGCGGAGCCCACTCTGCAAAAGCGGGAGAGGATTAAAACCGCAGGAGAAGAAGGGCGCAATTCTCAGCCATCTCGATCTGATTGAAGAACATACTCTGGGCTTTCTGTCGAATTCAGTGAGGAATTAAACGACGTAGAGCAGGTGTTACCGATGGACGGAGCACCAACAGATGTTGTGGTTGAGGCCAAGGACTTCACCtatgagggggaggaggtggtggcaGACCTGCTCCAGCAAGCAGCAGAAGGGGTGATGGACCAGCAGCCAGAGGGAGTTGCTGGTCTGGATACCCAGCAGCTGGTGGAGGGAGTCAATGTGGAGATGATGGTAATGGACTCCCTGGACCCGGCCCTGCTGCAGTTGAAGACTGAGGTGATGGATGCCCCTGTGGCTACAGCCCACGAGGCCACGGTCACCACGGTGGATGAGACCCAGATCATCACTCTGCAGGTTGTCAACATGGATGAGCAGCAGCTGGGGGGCCTCAGGGAGCTACAGCTGGTCCAGGTCCCTGTCTCTGCTGTCCCTGTCACCCAGGCCACTGTAGAGGCGCTACAGGGCACCTTCGTGGACACCACGGCCATGCCCAAAGACGGAAACCCTGTTATCTGCCACACCCTGCCCCTGCCAGAGGGATTCCAGGTGGTGAAGGTGGGTGCGAATGGTGAGGTGGAAACAGTGGAGCAGGATGAGCTCCAGCACCAAGAGGAACAGCAGGTCCagcctgaggaggaggaggaggagctgcagTGTGAGCCCCAGCCTGAAGAACCACAATGGTCCAAGGACCCCGACTACCAGCCCCCTGCCAAGAAGACCATCAAGAAGGCAAAAAAGAGCACGCTGCGCTACAACACAGAGGGGGATAAAGACAACATGGACGTGTCTGTGTATGATTTTGAGGAGGAGCAGCAGGAAGGGATGCTCTCTGAGGTCAACGCAGAGAAGGTGGTGGGCAACATGAAACCCCCCAAACCCACCAAAATTAAGAAGAAGGGTGTGAAGAAAACATTCCAGTGTGAGCTGTGTAGCTACACCTGTCCCCGCCGCTCCAACTTGGACCGACACATGAAAAGTCACACAGATGAGAGGCCCCACAAGTGCCATCTGTGTGGAAGGGCCTTCAGGACTGTTACCCTGCTAAGGAaccacctcaacacacacacagGTACCAGACCACACAAGTGTCAAGATTGTGACATGGCCTTCGTGACCAGTGGAGAGCTGGTCCGACATCGTCGCTACAAGCACACTCATGAGAAACCCTTCAAGTGCTCCATGTGTGACTATGCCAGTGTAGAGGTGAGCAAGCTAAAGCGGCACATCCGTTCCCACACTGGGGAGCGTCCGTTCCAGTGCAGTCTGTGCAGCTACGCCAGCAGAGACACCTACAAGCTGAAGAGACACATGAGGACACACTCGGGAGAGAAGCCGTACGAGTGCTATATTTGCCACGCCCGTTTCACCCAGAGTGGAACCATGAAGATGCACATCCTGCAGAAGCACACAGAGAACGTGGCTAAGTTCCACTGCCCCCACTGTGACACAGTCATCGCCCGAAAGAGTGACCTGGgTGTCCACCTGCGAAAACAGCACTCGTTCATTGAGCAGGGCAGGAAATGTCGTTACTGTGATGCTGTGTTCCACGAGCGCTATGCACTCATCCAGCACCAGAAGTCCCACAAGAACGAGAAACGCTTCAAGTGTGACCAGTGTGATTACTGCTGCAGACAGGAGCGCCACATGCTGATGCACAGGCGcacccacacaggagagaagccttacgcCTGTAGCCAGTGTGAGAAGACCTTCCGTCAGAAGCAGCTCCTGGACATGCACTTCCGGCGTTACCATGACCCCAACTTTGTGCCCACCGCCTTTGTGTGCACCAAGTGTGGCAAGGCCTTCACCCGCAGGAACACCATGGCCAGACATGCAGAGAACTGTAACGGGGATCCTAGTGAAGGAGAGAACGGATCCCCACCCAAGAGGGGACGaggtgggaggaagaggaagatgcgCTCAAGGAAGGACGAAgacgatgatgatgacgatgacgaCAGTGAGGACAATGCTGATCCTGAGCTGGATGACATtgatgaagaggatgaggaggctgAGGAAGCActgctggaggaagaggaggaggaggaggagatgatggAGTTGGAGCAGGCTCCACCCACCAAACCTATTCCTGCCCCTGTAGAGCCACCTGTCAAGAGGAAACGCGGCAGACCTCCCAAGAATATTCCCAAACCCTCCCCTCCCGCCAAAGCCAGCAAGGCTGCCCCCAAAAGCAAGGCTGCTGCAGCTGCAGCCGTCATCCAGGTGGAGGATGAGAATACCGGCGCCATAGAGAACATCATAGTGAAGAAGGAGCAAGAGGCTGAGCAGGCTGCCCCAGAGGTGGTGGTGGAGCAACCAGAGGAGGCAGGGGTGGAGACGGTGGAGCTGCCTGTAGCAGACGCTGCCCCCAACGGAGACCTCACCCCTGAGATGATCCTCAGCATGATGGACCGGTGATCTAGCCCACACAGACTGCTCAAAGACATCCCCTTGTCTCAACCTTTCCCTTCAACAAGTCTACCCTCTTCATACGATCTGCCATCTTACAAACCACTCTGCTTTACACTTTTGGTTTTTGTCTTAAACTAATCGGTGTGTTTTCTTATCACTCTCAAACCCACTTCCTTCCATGCATTCACTGTAACAGTTTAAGTTCTAGCTGCTTGGTCTGTAGAAATGTAGATCTTTTTTTGTGGGAGGAATGTTGTAGAAACGTGTAATAATGAATCCCTTCATGGAGGGATGGTAGCTGAGGTTTGACACGTGGACATTTTCTCTTTTTTCCCTCCAACTAATAAACTATTTTCTTAACCTGTTTGTGAGCTTGACATGGCAACAGTGAGTGCCAGTAATTTCAGCCTTGTTATCTAGGACCTCTGCGgtagactaaaactattactttcACTGTCAAAGGAAGTCCTTCCATTTTTTAACACTTTATTCACTGCATATTACATTTTACTTACTGTTATACTTGTCACATTATGGAGTTTGTAGAGGCTTTTACATTAACTACTATAATCGGGGACAGTGACATGCATCGACCCACAAAGTTTTTAAGACTGCAGTTATGTTGTACAAACGGTCATCGGCTGGTTTTGCCTGTAAATACTTTTTTAGTTTTATTACAAACATATTTGAATCTTTTTCTAGTGATCTAAAAAACTTTAATGCTGGGAGAAAGGAACTATTAACCATAGCTGTTTGGAACACAGGCAGTATGGAGATTTCTAATCTCTTACATGGGAGGCTTTGCCCACCCTGTAAATCATGTTGGAGATATGATCTTTCCAGTTTTGAGCTTTTTAGCCTGAATATCTACTGTTCTTTTTGGAGGTATAGAGGTTGGAAGCTTTACTCACTCTTAACCTACCTAACATCTCGACCGCATGGACTAATGTTAGAGGTTTTGAAAGATGACCATGTACGTCTTGTTTTGCTTTTCAAGATAAGGTAGAGAGATTGGGATGTAAATTGCGCCCATGTTCTGGAAAGCTAGAATCTAGTTGTGTGTTAAACTGTAAAGGAGGGAGGTGTCCACTTGAACTAGCTTCAGGTCTTAACTGTAAAGGAAAGATTATTAAGGCTTTGGTAATCTTGTGAAGCAGAACCTTTCTCCCAGTTCACTGTTCATTTCTCAAACCATTTTGTCCTAATGGTGCAGTTGTGTTGTGGGATGTATACAGACGCGGTCAGAGGGCCTTGTGGAATTCTGATTAGGAGGTTCAAAAAGGGGAGAAGAGAACTATAAGGGAAAGATATTTTGTATAAAGGTTGTTAGTCGTTTCAGAGAACAATGTTCTTTCTTTCGTAGACCATTTGACGCTGATACAACATGAAGCTTCCTTCTATATGTAATTGCATTTAAATTGCTTTTGTCAAGCTCTTAAAAATTATAGGTTGATGCATTTTTGTACCTGGCTGTACTGTGTGAATTTTACAATGATCTGAAAACCAACATAAATACATGTATTGTTGGGTTGAGAGGGCATGTTGGTATGCGGAATGTCTTACTGTACAGCTAATAAAAAGATATTGGCCTA

Function

GO: NA

KEGG:

id description
K23195 CTCF, CTCFL; transcriptional repressor CTCF

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202166 lncRNA downstream 2004 69867581 ~ 69868797 (-) True G177969
TU202121 lncRNA downstream 7417 69831826 ~ 69863384 (-) True G177925
TU202101 lncRNA downstream 111816 69758619 ~ 69758985 (-) True G177909
TU202091 lncRNA downstream 122827 69747773 ~ 69747974 (-) True G177901
TU202086 lncRNA downstream 132451 69738105 ~ 69738350 (-) True G177896
TU202220 lncRNA upstream 35905 69927984 ~ 69945427 (-) True G178005
TU202274 lncRNA upstream 185098 70077177 ~ 70077507 (-) True G178056
TU202292 lncRNA upstream 211063 70103142 ~ 70103632 (-) True G178074
TU202293 lncRNA upstream 212595 70104674 ~ 70104899 (-) True G178075
TU202294 lncRNA upstream 213275 70105354 ~ 70106158 (-) True G178076
XM_036954544.1 mRNA downstream 110 69834632 ~ 69870691 (-) False LOC110501833
XM_036954547.1 mRNA downstream 110 69834632 ~ 69870691 (-) True LOC110501833
XM_036954576.1 mRNA downstream 43322 69775927 ~ 69827479 (-) True LOC110494926
XM_021570267.2 mRNA downstream 43323 69775927 ~ 69827478 (-) False LOC110494926
XM_036954536.1 mRNA downstream 103435 69648833 ~ 69767366 (-) False LOC110494902
trnav-aac mRNA upstream 39450 69931529 ~ 69931601 (-) True trnav-aac
trnav-aac-2 mRNA upstream 43734 69935813 ~ 69935885 (-) True trnav-aac-2
trnav-aac-3 mRNA upstream 47995 69940074 ~ 69940146 (-) True trnav-aac-3
trnav-aac-4 mRNA upstream 52203 69944282 ~ 69944354 (-) True trnav-aac-4
trnav-aac-5 mRNA upstream 56422 69948501 ~ 69948573 (-) True trnav-aac-5
TU201996 other downstream 166402 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 279079 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3177951 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3480035 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3532415 66335412 ~ 66338386 (-) True G173675
TU202994 other upstream 668443 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 877079 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 1013293 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 1034611 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 1034611 70926690 ~ 70944761 (-) False ttc23

Expression Profile