RNA id: trnav-aac-5


Basic Information

Item Value
RNA id trnav-aac-5
length 73
RNA type mRNA
GC content 0.55
exon number 1
gene id trnav-aac-5
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69948501 ~ 69948573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttccgtagtgtagtggttatcacgttcgcctaacacgcgaaaggtccccggttcgagaccgggcggaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202220 lncRNA downstream 3074 69927984 ~ 69945427 (-) True G178005
TU202166 lncRNA downstream 79704 69867581 ~ 69868797 (-) True G177969
TU202121 lncRNA downstream 85117 69831826 ~ 69863384 (-) True G177925
TU202101 lncRNA downstream 189516 69758619 ~ 69758985 (-) True G177909
TU202091 lncRNA downstream 200527 69747773 ~ 69747974 (-) True G177901
TU202274 lncRNA upstream 128604 70077177 ~ 70077507 (-) True G178056
TU202292 lncRNA upstream 154569 70103142 ~ 70103632 (-) True G178074
TU202293 lncRNA upstream 156101 70104674 ~ 70104899 (-) True G178075
TU202294 lncRNA upstream 156781 70105354 ~ 70106158 (-) True G178076
TU202295 lncRNA upstream 157953 70106526 ~ 70106743 (-) True G178077
trnav-aac-4 mRNA downstream 4147 69944282 ~ 69944354 (-) True trnav-aac-4
trnav-aac-3 mRNA downstream 8355 69940074 ~ 69940146 (-) True trnav-aac-3
trnav-aac-2 mRNA downstream 12616 69935813 ~ 69935885 (-) True trnav-aac-2
trnav-aac mRNA downstream 16900 69931529 ~ 69931601 (-) True trnav-aac
XM_021570256.2 mRNA downstream 56422 69870801 ~ 69892079 (-) True LOC110494911
trnav-aac-6 mRNA upstream 4136 69952709 ~ 69952781 (-) True trnav-aac-6
XM_021570292.2 mRNA upstream 11520 69960093 ~ 69980350 (-) False zgc:152891
XR_005037698.1 mRNA upstream 11520 69960093 ~ 69980350 (-) True zgc:152891
XM_021570346.2 mRNA upstream 46517 69995090 ~ 70044483 (-) False LOC110494967
XM_021570354.2 mRNA upstream 46517 69995090 ~ 70044483 (-) False LOC110494967
TU201996 other downstream 244102 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 356779 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3255651 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3557735 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3610115 66335412 ~ 66338386 (-) True G173675
TU202994 other upstream 611949 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 820585 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 956799 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 978117 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 978117 70926690 ~ 70944761 (-) False ttc23