RNA id: XM_021570520.2


Basic Information

Item Value
RNA id XM_021570520.2
length 3744
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC110495228
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70402638 ~ 70546729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggagggattgcCCCCATAACGCTCAACATGAACGCTCCGCGGCAAAAGGATGTGTGAGCAAGCAGCGCGCTACTGCAGGGACGGTGTCCACAAACTGCTCCAAAAAGAACAACCGAAACTCCGGGCTCAGGACAGCAAAGAACAACCAAAACCCGTGGCCGAGGAAAGCGAGTCAGCGACGGCTGCACAGTCTGGAAACAGCGGCGCCCAGCCCGGTGGAATTGACGGGCTCGTCCGCTGGATAGTCACCAAGATGAGCGACAACAAAAGCATCTCTACCCGGGAATACGCGAAGGAGGAGGCAGCGGTTGCCCAAGAGCAGTTCTTCGCACCAGAGCCACGGAAAGGCATCTCTGTAATATTGGATATTTTCCGGAGAGCTGATAAGGATGATGATGGGAAGCTATCTCTGGACGAGTTCCAGGCATTCTTCTCCGACGGGACGCTGAACGAGGAAGAACTGGAGAATCTGTTTCACACAATTGACTCTGATAACACCAGTAATGTTGACACTAAGGAACTCTGTGACTACTTTGCCAAACACATGGGTGACTATGAGGGTGTACTGGCCTCCCTGGAGACTCTCAACCTGTCCATCCTCAGAGCCATGGACTTCACCAAAAAGGTGTATGAACGAGGGACCAATGTGGAGCAATTTGTTACCCGCTTCCTGTTGAAGGAATCAGCCAATCAGATCCATTCTCTGCTGAACTCGGTGGAGAGTGCTGTGGACGCTATTGACGAGCAGCACTGTAGTCAGTCAGGGTACCCTTCTAAGGTCAGTCAACAGGTTCCAGAGAAATGTTATGAGAACCCAGTGCCTGACTACCCTCCTAACAACAGAGTCAGTGCTGCCAAGGATGCTGCCCCAAGGAACATCAACACTGCTACAGGGGTGGTGGAGGTAAGGAAAGAGACGCTGGAGGCACAGATCAACCGACTAGCTGAGCTAATTGGACGCCTTGAGAACAAGACAGTTTGGTTTGACCTGCATCAGAGGCTAACAGACACTGATGGCACAGCCAGCGCATCTCTGTACCTGATTCGTCAGGAAATGACGGTATCCCAGAAGCAGCTGGGAGAATTCTGTGAGGCCCTGAAGCAGTAcctgaagaatgtctctgctgaaAGAGACTGCTTCCATGTGACTGCAGTGCGGCTGCCAGATGGGCTCTCCTTCGTGGTGTATGAGTtctgggatggagaggaggagtggaaaaAGCACCTCCAGGCTGCATCCTTCAAGGCCTTTCAACATGTTAAAGTTGACACTCTGTGCCAGCCTGAGGCTGTGTCCACTGTTGCTGTGCCAGcggCCTGGTGCAGCCTGAgcagagactgatgggggtggggACGCATCGCCTAAGTCCACAACACCCCCATCCTTAGCTCCCACATACCCCCTTTACCTCACTCTCACCCCCacaatccctctttctctcttttgtaAGTACATGTTTACACAGTGTCTGTTTGATATTGAGACTAAATGGAAGGCATCAATTGCAGTGAATATTAAACAGTGCATTAAAGCGAGATTACCGCCATCCAATGCATTTGTTCATTGTATCGTTCACCCTCAAGTCATTGTAGAAATGAGGTGAACAGTTAACCTGCTTTTGAGGCTCTAGTGCATGTCATCAATTTTGACTAAAAGACATgaacctgctgctgctgctaatgACAGAGTAATAGAGCCCTCAACATTCATCTCTATCAAGCTGTGAAGGTTCGTTTTTTTCCGTTGTGTTAAAGAGTACTTGTATGAATCAGCAATGGATATATTAGCTGTTAAAGTCTAGTAAAATTATATGAAAACATGTTCTATTATAATTATATTTGTATTGACGTCTTTAGTGGTAAAGTGCAAAATTCTTCAGAAGAAGCGGTTACAACAAAAGCAGCGAAACTTGTGGTTTTGCTGCAGACAGTTTCCCTTTTGAACAACTAATCTCAAGCCTTAAACATCAGCATGGGGTTGAGGTTATAGGATTTCCAATAATGGAGTTGCTGCAGATCCAACTTCACAGGATCTTTTTTCTCTCAGGACCTTTAGTTCTGAAGCTTCTGGGCATGTTTCTTGACCTCTACTTCACACACTCATTTTTGTGGTCTCCTTACCTTCACATTTCTCACTGATGATAATTTGTCAAGTCCATGCAGCATCTGCATACCAACCATTTGATCgcaatcagtttcatggggatgtGCATTTAGATCTTGAGTTATAGTGTTGTTTTGAACGATGTACAGTGAGCAAATTTTAGAGCAGATGGTGTTACCTATACCATAGCCTACAGAGACTGTGCATAAAGTAGAGAATAAACACATGAGCAGGACATGATCCACACATGCACAGAATCTTTAGGACCTTTAGTCGAGGGAATAAAGATCTGGGAAAAGTCAGATCCGCAGCCATGGCCTTCCCATAAACGCAGAGTAATTTGATTTTAAGCCTCTAACGCACAGCCATAAATTACAATCACAATGTTCATTGCAATTGAGCAAAAAGGAGATGTTTCACATATCAAGCAAATGATAGTAACAGAAAATATATCAGAAAGAATGTTCACCCACCAACCCAGTTGAAGAACCTCTTGTGCACATCTAGGAGCATGACCAGTTTGTCCAACTCCAACAACCTGAAATCAACATGATCCAACAGACCCAGTCGAAAAGCACAATGTAAATCAATGAGATATAGCGATTACATATATTTAAAGTATGAGTGTATTACAAATTCTCAATAAAAGTGTTTTATCTATAAACAATAATGTATGAATCACTCATCTTGATCTACCTTTAGAGGGTGGAATCTTTCACCCACTTCTCCATTTAATTTCTTAGTTTGTCCTGTAAGCACATGCTGGTGGCAAGCTTGTCCTTAACCAATTGGGGGATATCAAACCCTCACTCCCCAGGATAAGATTATCATCTTAGATAATTACATGTAAGTAATAACTAAGACTGTCCTTGTTCACTGTAAAAATACAACTTTATTTACTTGGCTTTGATCATAACTAGGACCACCACTGAAATGAAAATCGCACATGTTCAGTTCCATCTCTGGTGCTAAGCCACATTGCGCTTTTCTTTGAGAGAACCCTGGACTTCTCCATGTTAATACACCCGTGATATTAATAAATAGCACGCCTTGGGCTTCATATTAGCCTCAGCATCAGTATTACAGAGCAAGAGCATGGCTCCCTTGTTGACATAGACTTATGTGGGGAAATTCTACTGGAAAGGTTTTCTATCCGTAGCTTCCGTTGGGTTCTGTATGAACAGGTCAGAGCCAGTCAGAAAATGCCAATTCTATTTCTGTAACATTCCTGGCTGTTCCCTAAACTGTGCAACCAAATATTTTCCCCATCTCTTGAGTGCATGTTAAAATGAATGTCCAGTAACTTATTTAATGTAGAATTTAGCCATGCTACTTTCACTGGGTTTTGTGGATTTCTTATTTGTCTTTTATAGTATTCCTATAAAAAAGGACAgacaaaacaaatatatatatatatatatatgaatagaaAATGGCATACAGAATGAATATTCACTTTTATGGCAGTGTTTGGAGAAATGCTAATTCTTATACTTATGTATGTTTCAGTAAAATGGCTTTCTCTCTGAGTGTAGAGACTTATTGCAGGGATGCAAGTACCATATTTAGTCTTAAAACTGTTGAAATTCTAGATAATGTAGAATGATAAAACTCAATAAAATGGAAATAAACCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202753 lncRNA downstream 13053 70389273 ~ 70389585 (-) True G178485
TU202752 lncRNA downstream 13736 70386034 ~ 70388902 (-) True G178484
TU202751 lncRNA downstream 16835 70385137 ~ 70385803 (-) True G178483
TU202750 lncRNA downstream 17524 70384774 ~ 70385114 (-) True G178482
TU202743 lncRNA downstream 31262 70371115 ~ 70371376 (-) True G178476
TU203448 lncRNA upstream 138187 70684916 ~ 70685225 (-) True G179139
TU203443 lncRNA upstream 142524 70689253 ~ 70690634 (-) True G179134
TU203450 lncRNA upstream 144861 70691590 ~ 70691865 (-) True G179141
TU203508 lncRNA upstream 231707 70778436 ~ 70778692 (-) True G179178
TU203568 lncRNA upstream 295591 70842320 ~ 70842577 (-) True G179233
XM_021570386.2 mRNA downstream 192326 70182496 ~ 70210312 (-) False LOC110495034
XM_021570394.2 mRNA downstream 192326 70182496 ~ 70210312 (-) True LOC110495034
XR_005034535.1 mRNA downstream 225995 70174916 ~ 70176643 (-) False LOC118937291
XM_021570364.2 mRNA downstream 287538 70112555 ~ 70115100 (-) True zgc:158868
XM_036954652.1 mRNA downstream 287834 70112555 ~ 70114804 (-) False zgc:158868
LOC110501848 mRNA upstream 5534 70552263 ~ 70642587 (-) False LOC110501848
XM_021570536.2 mRNA upstream 166460 70713189 ~ 70731355 (-) False chka
XM_021570532.2 mRNA upstream 166460 70713189 ~ 70733880 (-) False chka
XM_036954750.1 mRNA upstream 166460 70713189 ~ 70733880 (-) False chka
XR_005037713.1 mRNA upstream 169255 70715984 ~ 70733880 (-) True chka
TU201996 other downstream 698239 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 810916 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3709788 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 4011872 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 4064252 66335412 ~ 66338386 (-) True G173675
TU202994 other upstream 13793 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 222429 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 358643 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 379961 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 379961 70926690 ~ 70944761 (-) False ttc23

Expression Profile